Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4977 and Psyr_4978 are separated by 153 nucleotides Psyr_4978 and Psyr_4979 are separated by 168 nucleotides Psyr_4979 and Psyr_4980 are separated by 130 nucleotides
Psyr_4977: Psyr_4977 - ADP-ribosylglycohydrolase, at 5,903,248 to 5,904,258
_4977
Psyr_4978: Psyr_4978 - hypothetical protein, at 5,904,412 to 5,904,711
_4978
Psyr_4979: Psyr_4979 - hypothetical protein, at 5,904,880 to 5,905,437
_4979
Psyr_4980: Psyr_4980 - conserved hypothetical protein, at 5,905,568 to 5,905,888
_4980
Position (kb) 5904
5905 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5903.456 kb on - strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.461 kb on - strand, within Psyr_4977 at 5903.525 kb on + strand, within Psyr_4977 at 5903.525 kb on + strand, within Psyr_4977 at 5903.525 kb on + strand, within Psyr_4977 at 5903.526 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977 at 5903.674 kb on + strand, within Psyr_4977 at 5903.675 kb on - strand, within Psyr_4977 at 5903.689 kb on + strand, within Psyr_4977 at 5903.689 kb on + strand, within Psyr_4977 at 5903.690 kb on - strand, within Psyr_4977 at 5903.690 kb on - strand, within Psyr_4977 at 5903.706 kb on + strand, within Psyr_4977 at 5903.706 kb on + strand, within Psyr_4977 at 5903.707 kb on - strand, within Psyr_4977 at 5903.770 kb on + strand, within Psyr_4977 at 5903.770 kb on + strand, within Psyr_4977 at 5903.792 kb on - strand, within Psyr_4977 at 5903.792 kb on - strand, within Psyr_4977 at 5903.792 kb on - strand, within Psyr_4977 at 5903.792 kb on - strand, within Psyr_4977 at 5903.792 kb on - strand, within Psyr_4977 at 5903.814 kb on + strand, within Psyr_4977 at 5903.814 kb on + strand, within Psyr_4977 at 5903.931 kb on + strand, within Psyr_4977 at 5903.931 kb on + strand, within Psyr_4977 at 5903.945 kb on - strand, within Psyr_4977 at 5903.945 kb on - strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5904.051 kb on + strand, within Psyr_4977 at 5904.051 kb on + strand, within Psyr_4977 at 5904.051 kb on + strand, within Psyr_4977 at 5904.052 kb on - strand, within Psyr_4977 at 5904.052 kb on - strand, within Psyr_4977 at 5904.118 kb on - strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.134 kb on - strand, within Psyr_4977 at 5904.134 kb on - strand, within Psyr_4977 at 5904.134 kb on - strand, within Psyr_4977 at 5904.134 kb on - strand, within Psyr_4977 at 5904.134 kb on - strand, within Psyr_4977 at 5904.192 kb on + strand at 5904.226 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.267 kb on + strand at 5904.267 kb on + strand at 5904.268 kb on - strand at 5904.268 kb on - strand at 5904.268 kb on - strand at 5904.311 kb on + strand at 5904.378 kb on + strand at 5904.393 kb on + strand at 5904.393 kb on + strand at 5904.393 kb on + strand at 5904.393 kb on + strand at 5904.393 kb on + strand at 5904.394 kb on - strand at 5904.394 kb on - strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.431 kb on - strand at 5904.453 kb on + strand, within Psyr_4978 at 5904.587 kb on + strand, within Psyr_4978 at 5904.587 kb on + strand, within Psyr_4978 at 5904.587 kb on + strand, within Psyr_4978 at 5904.587 kb on + strand, within Psyr_4978 at 5904.587 kb on + strand, within Psyr_4978 at 5904.588 kb on - strand, within Psyr_4978 at 5904.590 kb on + strand, within Psyr_4978 at 5904.591 kb on - strand, within Psyr_4978 at 5904.723 kb on - strand at 5904.813 kb on - strand at 5904.828 kb on + strand at 5904.875 kb on - strand at 5904.892 kb on + strand at 5904.900 kb on + strand at 5904.900 kb on + strand at 5904.906 kb on - strand at 5904.945 kb on + strand, within Psyr_4979 at 5904.995 kb on - strand, within Psyr_4979 at 5905.017 kb on + strand, within Psyr_4979 at 5905.017 kb on + strand, within Psyr_4979 at 5905.017 kb on + strand, within Psyr_4979 at 5905.038 kb on + strand, within Psyr_4979 at 5905.103 kb on - strand, within Psyr_4979 at 5905.207 kb on + strand, within Psyr_4979 at 5905.208 kb on - strand, within Psyr_4979 at 5905.208 kb on - strand, within Psyr_4979 at 5905.208 kb on - strand, within Psyr_4979 at 5905.239 kb on + strand, within Psyr_4979 at 5905.240 kb on - strand, within Psyr_4979 at 5905.267 kb on + strand, within Psyr_4979 at 5905.290 kb on + strand, within Psyr_4979 at 5905.291 kb on - strand, within Psyr_4979 at 5905.299 kb on - strand, within Psyr_4979 at 5905.306 kb on + strand, within Psyr_4979 at 5905.307 kb on - strand, within Psyr_4979 at 5905.309 kb on + strand, within Psyr_4979 at 5905.413 kb on + strand at 5905.437 kb on + strand at 5905.442 kb on - strand at 5905.473 kb on - strand at 5905.550 kb on + strand at 5905.624 kb on + strand, within Psyr_4980 at 5905.648 kb on - strand, within Psyr_4980 at 5905.648 kb on - strand, within Psyr_4980 at 5905.659 kb on - strand, within Psyr_4980 at 5905.668 kb on + strand, within Psyr_4980 at 5905.669 kb on - strand, within Psyr_4980 at 5905.669 kb on - strand, within Psyr_4980
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 5,903,456 - Psyr_4977 0.21 +1.4 5,903,460 + Psyr_4977 0.21 -0.6 5,903,460 + Psyr_4977 0.21 -0.1 5,903,460 + Psyr_4977 0.21 -1.5 5,903,460 + Psyr_4977 0.21 +2.0 5,903,460 + Psyr_4977 0.21 +0.0 5,903,461 - Psyr_4977 0.21 -0.2 5,903,525 + Psyr_4977 0.27 +0.2 5,903,525 + Psyr_4977 0.27 -0.6 5,903,525 + Psyr_4977 0.27 +1.1 5,903,526 - Psyr_4977 0.27 +1.4 5,903,654 - Psyr_4977 0.40 -0.9 5,903,654 - Psyr_4977 0.40 -0.2 5,903,654 - Psyr_4977 0.40 +0.3 5,903,654 - Psyr_4977 0.40 -0.4 5,903,674 + Psyr_4977 0.42 +1.0 5,903,675 - Psyr_4977 0.42 +0.1 5,903,689 + Psyr_4977 0.44 -0.3 5,903,689 + Psyr_4977 0.44 -0.2 5,903,690 - Psyr_4977 0.44 +1.7 5,903,690 - Psyr_4977 0.44 -1.6 5,903,706 + Psyr_4977 0.45 +0.5 5,903,706 + Psyr_4977 0.45 +0.1 5,903,707 - Psyr_4977 0.45 -0.7 5,903,770 + Psyr_4977 0.52 -1.6 5,903,770 + Psyr_4977 0.52 +1.6 5,903,792 - Psyr_4977 0.54 +0.3 5,903,792 - Psyr_4977 0.54 -0.5 5,903,792 - Psyr_4977 0.54 -0.7 5,903,792 - Psyr_4977 0.54 -1.4 5,903,792 - Psyr_4977 0.54 +0.6 5,903,814 + Psyr_4977 0.56 +0.6 5,903,814 + Psyr_4977 0.56 -0.0 5,903,931 + Psyr_4977 0.68 +1.0 5,903,931 + Psyr_4977 0.68 -0.5 5,903,945 - Psyr_4977 0.69 +1.4 5,903,945 - Psyr_4977 0.69 -1.6 5,903,990 + Psyr_4977 0.73 +0.9 5,903,990 + Psyr_4977 0.73 -0.1 5,903,990 + Psyr_4977 0.73 +1.9 5,903,990 + Psyr_4977 0.73 +0.1 5,903,990 + Psyr_4977 0.73 +0.4 5,903,990 + Psyr_4977 0.73 +3.4 5,903,990 + Psyr_4977 0.73 +0.1 5,903,991 - Psyr_4977 0.73 -0.1 5,903,991 - Psyr_4977 0.73 -0.3 5,903,991 - Psyr_4977 0.73 +0.9 5,903,991 - Psyr_4977 0.73 +0.2 5,903,991 - Psyr_4977 0.73 -0.2 5,903,991 - Psyr_4977 0.73 +0.9 5,903,991 - Psyr_4977 0.73 +0.4 5,903,991 - Psyr_4977 0.73 -0.3 5,904,051 + Psyr_4977 0.79 -0.6 5,904,051 + Psyr_4977 0.79 -1.2 5,904,051 + Psyr_4977 0.79 -0.2 5,904,052 - Psyr_4977 0.80 -1.5 5,904,052 - Psyr_4977 0.80 +0.4 5,904,118 - Psyr_4977 0.86 +0.5 5,904,133 + Psyr_4977 0.88 -0.8 5,904,133 + Psyr_4977 0.88 +1.4 5,904,133 + Psyr_4977 0.88 -0.2 5,904,133 + Psyr_4977 0.88 +1.0 5,904,133 + Psyr_4977 0.88 +0.2 5,904,133 + Psyr_4977 0.88 +0.1 5,904,133 + Psyr_4977 0.88 +0.7 5,904,134 - Psyr_4977 0.88 +0.8 5,904,134 - Psyr_4977 0.88 -2.4 5,904,134 - Psyr_4977 0.88 +2.1 5,904,134 - Psyr_4977 0.88 -0.7 5,904,134 - Psyr_4977 0.88 +1.8 5,904,192 + +0.1 5,904,226 + +0.3 5,904,258 + +0.4 5,904,258 + -0.2 5,904,258 + +1.6 5,904,258 + +1.6 5,904,258 + -1.9 5,904,258 + -0.3 5,904,258 + +0.4 5,904,258 + +1.8 5,904,258 + +1.3 5,904,258 + +1.3 5,904,258 + -0.2 5,904,258 + -0.2 5,904,258 + -0.8 5,904,258 + +1.0 5,904,258 + -1.4 5,904,258 + +1.4 5,904,258 + +1.4 5,904,258 + +0.6 5,904,258 + +0.0 5,904,259 - +0.2 5,904,259 - -0.8 5,904,259 - -1.7 5,904,259 - +0.4 5,904,259 - +0.0 5,904,259 - +0.8 5,904,259 - +0.2 5,904,259 - +2.0 5,904,259 - -2.6 5,904,259 - +0.0 5,904,259 - -0.4 5,904,259 - -1.9 5,904,259 - -0.1 5,904,260 + -0.3 5,904,260 + +0.8 5,904,260 + -0.1 5,904,260 + -1.8 5,904,260 + -1.3 5,904,260 + -0.5 5,904,260 + -0.8 5,904,261 - -0.6 5,904,261 - +1.4 5,904,261 - -0.8 5,904,261 - +0.2 5,904,261 - -0.2 5,904,261 - -3.2 5,904,261 - -0.0 5,904,261 - +0.7 5,904,261 - +0.0 5,904,261 - +1.8 5,904,267 + -1.9 5,904,267 + -0.7 5,904,268 - +1.2 5,904,268 - +0.9 5,904,268 - -0.6 5,904,311 + -0.2 5,904,378 + -0.3 5,904,393 + +0.6 5,904,393 + -1.1 5,904,393 + -0.5 5,904,393 + -0.8 5,904,393 + +1.2 5,904,394 - -0.3 5,904,394 - +0.4 5,904,430 + -0.3 5,904,430 + +0.5 5,904,430 + -0.2 5,904,430 + -0.9 5,904,430 + -1.4 5,904,430 + +2.4 5,904,430 + +1.1 5,904,431 - -0.2 5,904,453 + Psyr_4978 0.14 +0.4 5,904,587 + Psyr_4978 0.58 -0.8 5,904,587 + Psyr_4978 0.58 +0.9 5,904,587 + Psyr_4978 0.58 -0.5 5,904,587 + Psyr_4978 0.58 +0.0 5,904,587 + Psyr_4978 0.58 +0.6 5,904,588 - Psyr_4978 0.59 -0.3 5,904,590 + Psyr_4978 0.59 +3.0 5,904,591 - Psyr_4978 0.60 +0.7 5,904,723 - +0.9 5,904,813 - +2.5 5,904,828 + +1.3 5,904,875 - -0.6 5,904,892 + +0.8 5,904,900 + +2.1 5,904,900 + +1.3 5,904,906 - +0.7 5,904,945 + Psyr_4979 0.12 +0.0 5,904,995 - Psyr_4979 0.21 +0.4 5,905,017 + Psyr_4979 0.25 +2.3 5,905,017 + Psyr_4979 0.25 -0.5 5,905,017 + Psyr_4979 0.25 -0.5 5,905,038 + Psyr_4979 0.28 -0.9 5,905,103 - Psyr_4979 0.40 +0.5 5,905,207 + Psyr_4979 0.59 +2.1 5,905,208 - Psyr_4979 0.59 -1.0 5,905,208 - Psyr_4979 0.59 -0.2 5,905,208 - Psyr_4979 0.59 +0.2 5,905,239 + Psyr_4979 0.64 -2.0 5,905,240 - Psyr_4979 0.65 -0.6 5,905,267 + Psyr_4979 0.69 -0.0 5,905,290 + Psyr_4979 0.73 -0.0 5,905,291 - Psyr_4979 0.74 -0.4 5,905,299 - Psyr_4979 0.75 +0.4 5,905,306 + Psyr_4979 0.76 +0.3 5,905,307 - Psyr_4979 0.77 +1.4 5,905,309 + Psyr_4979 0.77 -0.6 5,905,413 + -0.5 5,905,437 + -2.0 5,905,442 - -1.6 5,905,473 - -0.7 5,905,550 + -0.0 5,905,624 + Psyr_4980 0.17 +1.1 5,905,648 - Psyr_4980 0.25 -0.3 5,905,648 - Psyr_4980 0.25 -0.8 5,905,659 - Psyr_4980 0.28 -0.6 5,905,668 + Psyr_4980 0.31 -1.2 5,905,669 - Psyr_4980 0.31 -0.3 5,905,669 - Psyr_4980 0.31 +0.3
Or see this region's nucleotide sequence