Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4946 and Psyr_4947 are separated by 209 nucleotides Psyr_4947 and Psyr_4948 are separated by 133 nucleotides
Psyr_4946: Psyr_4946 - Oxidoreductase alpha (molybdopterin) subunit, at 5,860,973 to 5,863,309
_4946
Psyr_4947: Psyr_4947 - conserved hypothetical protein, at 5,863,519 to 5,863,959
_4947
Psyr_4948: Psyr_4948 - ATP-dependent DNA helicase, RecQ-like protein, at 5,864,093 to 5,866,042
_4948
Position (kb) 5863
5864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5862.731 kb on + strand, within Psyr_4946 at 5862.732 kb on - strand, within Psyr_4946 at 5862.732 kb on - strand, within Psyr_4946 at 5862.816 kb on - strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.974 kb on + strand, within Psyr_4946 at 5862.975 kb on - strand, within Psyr_4946 at 5862.975 kb on - strand, within Psyr_4946 at 5862.990 kb on - strand, within Psyr_4946 at 5862.990 kb on - strand, within Psyr_4946 at 5862.990 kb on - strand at 5863.188 kb on - strand at 5863.370 kb on - strand at 5863.395 kb on - strand at 5863.465 kb on + strand at 5863.465 kb on + strand at 5863.465 kb on + strand at 5863.465 kb on + strand at 5863.465 kb on + strand at 5863.466 kb on - strand at 5863.466 kb on - strand at 5863.466 kb on - strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.517 kb on - strand at 5863.517 kb on - strand at 5863.525 kb on + strand at 5863.525 kb on + strand at 5863.525 kb on + strand at 5863.526 kb on - strand at 5863.526 kb on - strand at 5863.526 kb on - strand at 5863.526 kb on - strand at 5863.535 kb on + strand at 5863.536 kb on - strand at 5863.598 kb on + strand, within Psyr_4947 at 5863.729 kb on - strand, within Psyr_4947 at 5863.827 kb on - strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.960 kb on + strand at 5863.984 kb on - strand at 5863.984 kb on - strand at 5863.984 kb on - strand at 5864.084 kb on + strand at 5864.085 kb on - strand at 5864.085 kb on - strand at 5864.091 kb on - strand at 5864.217 kb on - strand at 5864.259 kb on + strand at 5864.259 kb on + strand at 5864.259 kb on + strand at 5864.259 kb on + strand at 5864.259 kb on + strand at 5864.260 kb on - strand at 5864.260 kb on - strand at 5864.260 kb on - strand at 5864.412 kb on + strand, within Psyr_4948 at 5864.413 kb on - strand, within Psyr_4948 at 5864.413 kb on - strand, within Psyr_4948 at 5864.508 kb on + strand, within Psyr_4948 at 5864.508 kb on + strand, within Psyr_4948 at 5864.508 kb on + strand, within Psyr_4948 at 5864.565 kb on + strand, within Psyr_4948 at 5864.565 kb on + strand, within Psyr_4948 at 5864.619 kb on + strand, within Psyr_4948 at 5864.620 kb on - strand, within Psyr_4948 at 5864.620 kb on - strand, within Psyr_4948 at 5864.620 kb on - strand, within Psyr_4948 at 5864.658 kb on + strand, within Psyr_4948 at 5864.659 kb on - strand, within Psyr_4948 at 5864.659 kb on - strand, within Psyr_4948 at 5864.667 kb on + strand, within Psyr_4948 at 5864.667 kb on + strand, within Psyr_4948 at 5864.667 kb on + strand, within Psyr_4948 at 5864.667 kb on + strand, within Psyr_4948 at 5864.667 kb on + strand, within Psyr_4948 at 5864.668 kb on - strand, within Psyr_4948 at 5864.668 kb on - strand, within Psyr_4948 at 5864.802 kb on + strand, within Psyr_4948 at 5864.802 kb on + strand, within Psyr_4948 at 5864.815 kb on - strand, within Psyr_4948
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 5,862,731 + Psyr_4946 0.75 -1.4 5,862,732 - Psyr_4946 0.75 +2.3 5,862,732 - Psyr_4946 0.75 -1.9 5,862,816 - Psyr_4946 0.79 +0.7 5,862,974 + Psyr_4946 0.86 +1.3 5,862,974 + Psyr_4946 0.86 -0.2 5,862,974 + Psyr_4946 0.86 -1.4 5,862,974 + Psyr_4946 0.86 -3.3 5,862,974 + Psyr_4946 0.86 +0.3 5,862,974 + Psyr_4946 0.86 -0.8 5,862,974 + Psyr_4946 0.86 +0.4 5,862,974 + Psyr_4946 0.86 +1.6 5,862,975 - Psyr_4946 0.86 +0.5 5,862,975 - Psyr_4946 0.86 -0.8 5,862,990 - Psyr_4946 0.86 -1.7 5,862,990 - Psyr_4946 0.86 +2.2 5,862,990 - +1.4 5,863,188 - -1.2 5,863,370 - +0.9 5,863,395 - -1.8 5,863,465 + +1.1 5,863,465 + -0.7 5,863,465 + -0.4 5,863,465 + +1.7 5,863,465 + -0.7 5,863,466 - -0.4 5,863,466 - +3.7 5,863,466 - +0.0 5,863,516 + -0.6 5,863,516 + +1.4 5,863,516 + -1.6 5,863,516 + -0.0 5,863,516 + -0.6 5,863,516 + +1.1 5,863,516 + +0.8 5,863,517 - -0.3 5,863,517 - -0.9 5,863,525 + -0.4 5,863,525 + -1.0 5,863,525 + -0.6 5,863,526 - -0.5 5,863,526 - +0.9 5,863,526 - -1.9 5,863,526 - -0.4 5,863,535 + +1.8 5,863,536 - -0.2 5,863,598 + Psyr_4947 0.18 -0.3 5,863,729 - Psyr_4947 0.48 -0.8 5,863,827 - Psyr_4947 0.70 +0.3 5,863,858 + Psyr_4947 0.77 -0.4 5,863,858 + Psyr_4947 0.77 -1.6 5,863,858 + Psyr_4947 0.77 -2.6 5,863,858 + Psyr_4947 0.77 -1.6 5,863,858 + Psyr_4947 0.77 -0.7 5,863,858 + Psyr_4947 0.77 +0.3 5,863,858 + Psyr_4947 0.77 -0.4 5,863,858 + Psyr_4947 0.77 -1.2 5,863,858 + Psyr_4947 0.77 -0.9 5,863,858 + Psyr_4947 0.77 -0.9 5,863,858 + Psyr_4947 0.77 +0.0 5,863,859 - Psyr_4947 0.77 +0.2 5,863,859 - Psyr_4947 0.77 +0.7 5,863,859 - Psyr_4947 0.77 +0.2 5,863,859 - Psyr_4947 0.77 -1.3 5,863,859 - Psyr_4947 0.77 -1.0 5,863,859 - Psyr_4947 0.77 -2.8 5,863,859 - Psyr_4947 0.77 -1.1 5,863,859 - Psyr_4947 0.77 +1.9 5,863,859 - Psyr_4947 0.77 +0.6 5,863,859 - Psyr_4947 0.77 +0.2 5,863,859 - Psyr_4947 0.77 -0.9 5,863,960 + -1.1 5,863,984 - +0.6 5,863,984 - -0.2 5,863,984 - -0.4 5,864,084 + +0.0 5,864,085 - -0.1 5,864,085 - -0.9 5,864,091 - +1.4 5,864,217 - -0.2 5,864,259 + -1.5 5,864,259 + -1.3 5,864,259 + -1.1 5,864,259 + +1.1 5,864,259 + +0.1 5,864,260 - -0.9 5,864,260 - +0.5 5,864,260 - +1.5 5,864,412 + Psyr_4948 0.16 +0.2 5,864,413 - Psyr_4948 0.16 +0.4 5,864,413 - Psyr_4948 0.16 +0.6 5,864,508 + Psyr_4948 0.21 -0.9 5,864,508 + Psyr_4948 0.21 -0.6 5,864,508 + Psyr_4948 0.21 +1.2 5,864,565 + Psyr_4948 0.24 -1.1 5,864,565 + Psyr_4948 0.24 -1.9 5,864,619 + Psyr_4948 0.27 +1.0 5,864,620 - Psyr_4948 0.27 +0.2 5,864,620 - Psyr_4948 0.27 -1.0 5,864,620 - Psyr_4948 0.27 -2.1 5,864,658 + Psyr_4948 0.29 -0.7 5,864,659 - Psyr_4948 0.29 +0.1 5,864,659 - Psyr_4948 0.29 -0.5 5,864,667 + Psyr_4948 0.29 +0.0 5,864,667 + Psyr_4948 0.29 -0.2 5,864,667 + Psyr_4948 0.29 -1.3 5,864,667 + Psyr_4948 0.29 -0.1 5,864,667 + Psyr_4948 0.29 +4.9 5,864,668 - Psyr_4948 0.29 -0.4 5,864,668 - Psyr_4948 0.29 -0.6 5,864,802 + Psyr_4948 0.36 +0.1 5,864,802 + Psyr_4948 0.36 +1.0 5,864,815 - Psyr_4948 0.37 +1.4
Or see this region's nucleotide sequence