Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4895 and Psyr_4896 overlap by 14 nucleotides Psyr_4896 and Psyr_4897 overlap by 1 nucleotides Psyr_4897 and Psyr_4898 are separated by 93 nucleotides
Psyr_4895: Psyr_4895 - conserved hypothetical protein, at 5,807,453 to 5,807,731
_4895
Psyr_4896: Psyr_4896 - imidazole glycerol phosphate synthase subunit hisH, at 5,807,718 to 5,808,356
_4896
Psyr_4897: Psyr_4897 - imidazoleglycerol-phosphate dehydratase, at 5,808,356 to 5,808,949
_4897
Psyr_4898: Psyr_4898 - aromatic amino acid aminotransferase apoenzyme, at 5,809,043 to 5,810,242
_4898
Position (kb) 5808
5809 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5807.398 kb on + strand at 5807.398 kb on + strand at 5807.398 kb on + strand at 5807.398 kb on + strand at 5807.398 kb on + strand at 5807.399 kb on - strand at 5807.399 kb on - strand at 5807.399 kb on - strand at 5807.399 kb on - strand at 5807.399 kb on - strand at 5807.404 kb on + strand at 5807.404 kb on + strand at 5807.404 kb on + strand at 5807.451 kb on - strand at 5807.451 kb on - strand at 5807.451 kb on - strand at 5807.451 kb on - strand at 5807.454 kb on + strand at 5807.454 kb on + strand at 5807.455 kb on - strand at 5807.455 kb on - strand at 5807.541 kb on + strand, within Psyr_4895 at 5807.541 kb on + strand, within Psyr_4895 at 5807.541 kb on + strand, within Psyr_4895 at 5807.542 kb on - strand, within Psyr_4895 at 5807.544 kb on + strand, within Psyr_4895 at 5807.545 kb on - strand, within Psyr_4895 at 5807.545 kb on - strand, within Psyr_4895 at 5807.696 kb on - strand, within Psyr_4895 at 5807.888 kb on + strand, within Psyr_4896 at 5807.890 kb on + strand, within Psyr_4896 at 5807.890 kb on + strand, within Psyr_4896 at 5807.890 kb on + strand, within Psyr_4896 at 5807.890 kb on + strand, within Psyr_4896 at 5807.890 kb on + strand, within Psyr_4896 at 5807.890 kb on + strand, within Psyr_4896 at 5807.890 kb on + strand, within Psyr_4896 at 5807.891 kb on - strand, within Psyr_4896 at 5807.891 kb on - strand, within Psyr_4896 at 5807.891 kb on - strand, within Psyr_4896 at 5807.908 kb on + strand, within Psyr_4896 at 5807.908 kb on + strand, within Psyr_4896 at 5807.908 kb on + strand, within Psyr_4896 at 5807.909 kb on - strand, within Psyr_4896 at 5807.909 kb on - strand, within Psyr_4896 at 5807.909 kb on - strand, within Psyr_4896 at 5808.036 kb on + strand, within Psyr_4896 at 5808.037 kb on - strand, within Psyr_4896 at 5808.037 kb on - strand, within Psyr_4896 at 5808.119 kb on + strand, within Psyr_4896 at 5808.263 kb on + strand, within Psyr_4896 at 5808.394 kb on + strand at 5808.566 kb on + strand, within Psyr_4897 at 5808.567 kb on - strand, within Psyr_4897 at 5808.582 kb on + strand, within Psyr_4897 at 5808.583 kb on - strand, within Psyr_4897 at 5808.660 kb on + strand, within Psyr_4897 at 5808.661 kb on - strand, within Psyr_4897 at 5808.661 kb on - strand, within Psyr_4897 at 5808.916 kb on + strand at 5808.930 kb on + strand at 5808.931 kb on - strand at 5808.931 kb on - strand at 5808.931 kb on - strand at 5808.937 kb on + strand at 5808.937 kb on + strand at 5808.938 kb on - strand at 5808.938 kb on - strand at 5808.992 kb on + strand at 5808.992 kb on + strand at 5808.992 kb on + strand at 5808.993 kb on - strand at 5808.993 kb on - strand at 5808.994 kb on + strand at 5808.994 kb on + strand at 5808.995 kb on - strand at 5808.995 kb on - strand at 5808.995 kb on - strand at 5808.995 kb on - strand at 5809.040 kb on + strand at 5809.045 kb on - strand at 5809.045 kb on - strand at 5809.072 kb on + strand at 5809.076 kb on + strand at 5809.076 kb on + strand at 5809.076 kb on + strand at 5809.076 kb on + strand at 5809.076 kb on + strand at 5809.076 kb on + strand at 5809.076 kb on + strand at 5809.076 kb on + strand at 5809.076 kb on + strand at 5809.076 kb on + strand at 5809.076 kb on + strand at 5809.076 kb on + strand at 5809.076 kb on + strand at 5809.076 kb on + strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.077 kb on - strand at 5809.137 kb on + strand at 5809.137 kb on + strand at 5809.137 kb on + strand at 5809.137 kb on + strand at 5809.137 kb on + strand at 5809.137 kb on + strand at 5809.137 kb on + strand at 5809.138 kb on - strand at 5809.138 kb on - strand at 5809.138 kb on - strand at 5809.138 kb on - strand at 5809.138 kb on - strand at 5809.138 kb on - strand at 5809.138 kb on - strand at 5809.138 kb on - strand at 5809.138 kb on - strand at 5809.138 kb on - strand at 5809.192 kb on - strand, within Psyr_4898 at 5809.220 kb on - strand, within Psyr_4898 at 5809.288 kb on + strand, within Psyr_4898 at 5809.289 kb on - strand, within Psyr_4898 at 5809.289 kb on - strand, within Psyr_4898 at 5809.392 kb on + strand, within Psyr_4898 at 5809.392 kb on + strand, within Psyr_4898 at 5809.392 kb on + strand, within Psyr_4898 at 5809.393 kb on - strand, within Psyr_4898 at 5809.393 kb on - strand, within Psyr_4898 at 5809.393 kb on - strand, within Psyr_4898 at 5809.393 kb on - strand, within Psyr_4898 at 5809.488 kb on + strand, within Psyr_4898 at 5809.489 kb on - strand, within Psyr_4898 at 5809.517 kb on - strand, within Psyr_4898 at 5809.535 kb on - strand, within Psyr_4898 at 5809.535 kb on - strand, within Psyr_4898 at 5809.563 kb on + strand, within Psyr_4898 at 5809.563 kb on + strand, within Psyr_4898 at 5809.564 kb on - strand, within Psyr_4898 at 5809.564 kb on - strand, within Psyr_4898 at 5809.564 kb on - strand, within Psyr_4898 at 5809.564 kb on - strand, within Psyr_4898 at 5809.564 kb on - strand, within Psyr_4898 at 5809.600 kb on - strand, within Psyr_4898 at 5809.795 kb on - strand, within Psyr_4898 at 5809.893 kb on + strand, within Psyr_4898 at 5809.893 kb on + strand, within Psyr_4898 at 5809.893 kb on + strand, within Psyr_4898 at 5809.894 kb on - strand, within Psyr_4898 at 5809.894 kb on - strand, within Psyr_4898 at 5809.913 kb on + strand, within Psyr_4898 at 5809.913 kb on + strand, within Psyr_4898 at 5809.913 kb on + strand, within Psyr_4898 at 5809.913 kb on + strand, within Psyr_4898 at 5809.914 kb on - strand, within Psyr_4898 at 5809.914 kb on - strand, within Psyr_4898 at 5809.914 kb on - strand, within Psyr_4898 at 5809.914 kb on - strand, within Psyr_4898 at 5809.914 kb on - strand, within Psyr_4898
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 5,807,398 + +0.2 5,807,398 + -0.6 5,807,398 + +0.6 5,807,398 + +1.0 5,807,398 + -1.6 5,807,399 - -1.5 5,807,399 - +0.7 5,807,399 - +1.1 5,807,399 - +0.2 5,807,399 - -0.3 5,807,404 + -0.8 5,807,404 + -0.4 5,807,404 + -0.1 5,807,451 - -1.7 5,807,451 - +0.2 5,807,451 - -2.8 5,807,451 - +1.8 5,807,454 + -2.2 5,807,454 + -1.2 5,807,455 - -0.1 5,807,455 - -0.5 5,807,541 + Psyr_4895 0.32 +0.2 5,807,541 + Psyr_4895 0.32 -0.1 5,807,541 + Psyr_4895 0.32 -0.2 5,807,542 - Psyr_4895 0.32 -0.2 5,807,544 + Psyr_4895 0.33 +1.4 5,807,545 - Psyr_4895 0.33 +0.4 5,807,545 - Psyr_4895 0.33 +1.0 5,807,696 - Psyr_4895 0.87 +1.0 5,807,888 + Psyr_4896 0.27 +0.2 5,807,890 + Psyr_4896 0.27 -2.0 5,807,890 + Psyr_4896 0.27 +2.5 5,807,890 + Psyr_4896 0.27 -2.0 5,807,890 + Psyr_4896 0.27 -2.1 5,807,890 + Psyr_4896 0.27 -1.0 5,807,890 + Psyr_4896 0.27 -0.1 5,807,890 + Psyr_4896 0.27 +2.0 5,807,891 - Psyr_4896 0.27 +1.4 5,807,891 - Psyr_4896 0.27 +1.4 5,807,891 - Psyr_4896 0.27 +1.8 5,807,908 + Psyr_4896 0.30 +0.7 5,807,908 + Psyr_4896 0.30 +0.1 5,807,908 + Psyr_4896 0.30 +1.2 5,807,909 - Psyr_4896 0.30 +2.8 5,807,909 - Psyr_4896 0.30 -0.6 5,807,909 - Psyr_4896 0.30 -0.2 5,808,036 + Psyr_4896 0.50 +1.4 5,808,037 - Psyr_4896 0.50 +0.2 5,808,037 - Psyr_4896 0.50 +0.9 5,808,119 + Psyr_4896 0.63 -0.2 5,808,263 + Psyr_4896 0.85 +0.1 5,808,394 + -0.6 5,808,566 + Psyr_4897 0.35 -2.1 5,808,567 - Psyr_4897 0.36 -0.2 5,808,582 + Psyr_4897 0.38 -0.1 5,808,583 - Psyr_4897 0.38 -0.6 5,808,660 + Psyr_4897 0.51 -0.1 5,808,661 - Psyr_4897 0.51 -0.4 5,808,661 - Psyr_4897 0.51 -1.5 5,808,916 + +1.0 5,808,930 + -0.0 5,808,931 - -2.3 5,808,931 - -1.3 5,808,931 - -0.6 5,808,937 + +0.4 5,808,937 + +1.0 5,808,938 - -2.3 5,808,938 - -2.8 5,808,992 + +1.2 5,808,992 + -2.1 5,808,992 + -0.3 5,808,993 - +0.8 5,808,993 - +1.0 5,808,994 + +0.6 5,808,994 + -0.5 5,808,995 - +0.3 5,808,995 - -1.4 5,808,995 - -0.5 5,808,995 - -1.3 5,809,040 + -0.6 5,809,045 - +0.2 5,809,045 - +2.2 5,809,072 + -0.8 5,809,076 + -0.1 5,809,076 + -1.5 5,809,076 + +0.3 5,809,076 + -0.5 5,809,076 + +0.1 5,809,076 + -0.2 5,809,076 + -0.6 5,809,076 + -0.1 5,809,076 + -0.2 5,809,076 + +1.1 5,809,076 + +0.5 5,809,076 + -0.8 5,809,076 + -0.8 5,809,076 + -1.3 5,809,077 - +3.0 5,809,077 - -1.7 5,809,077 - -0.2 5,809,077 - +0.7 5,809,077 - +0.6 5,809,077 - +0.5 5,809,077 - +0.2 5,809,077 - -0.7 5,809,077 - -0.3 5,809,077 - -2.1 5,809,077 - -0.2 5,809,077 - -0.8 5,809,077 - +0.3 5,809,077 - +0.2 5,809,077 - -0.5 5,809,077 - -1.1 5,809,077 - +0.8 5,809,077 - -1.9 5,809,137 + -1.1 5,809,137 + +0.8 5,809,137 + +0.3 5,809,137 + -0.4 5,809,137 + +0.2 5,809,137 + -0.3 5,809,137 + +0.8 5,809,138 - +4.0 5,809,138 - -0.3 5,809,138 - +0.4 5,809,138 - -0.4 5,809,138 - +1.1 5,809,138 - +0.2 5,809,138 - -3.1 5,809,138 - -0.4 5,809,138 - -0.2 5,809,138 - -1.6 5,809,192 - Psyr_4898 0.12 +0.2 5,809,220 - Psyr_4898 0.15 +0.5 5,809,288 + Psyr_4898 0.20 +0.4 5,809,289 - Psyr_4898 0.20 +0.1 5,809,289 - Psyr_4898 0.20 -0.0 5,809,392 + Psyr_4898 0.29 -1.7 5,809,392 + Psyr_4898 0.29 +0.2 5,809,392 + Psyr_4898 0.29 -0.2 5,809,393 - Psyr_4898 0.29 -1.4 5,809,393 - Psyr_4898 0.29 +0.3 5,809,393 - Psyr_4898 0.29 -0.8 5,809,393 - Psyr_4898 0.29 -0.1 5,809,488 + Psyr_4898 0.37 -1.7 5,809,489 - Psyr_4898 0.37 +3.4 5,809,517 - Psyr_4898 0.40 +0.0 5,809,535 - Psyr_4898 0.41 +2.4 5,809,535 - Psyr_4898 0.41 -0.3 5,809,563 + Psyr_4898 0.43 +1.1 5,809,563 + Psyr_4898 0.43 -0.4 5,809,564 - Psyr_4898 0.43 +1.4 5,809,564 - Psyr_4898 0.43 +1.1 5,809,564 - Psyr_4898 0.43 -0.6 5,809,564 - Psyr_4898 0.43 -0.4 5,809,564 - Psyr_4898 0.43 -0.4 5,809,600 - Psyr_4898 0.46 +1.4 5,809,795 - Psyr_4898 0.63 -1.8 5,809,893 + Psyr_4898 0.71 +1.1 5,809,893 + Psyr_4898 0.71 +0.5 5,809,893 + Psyr_4898 0.71 +0.1 5,809,894 - Psyr_4898 0.71 +0.0 5,809,894 - Psyr_4898 0.71 -0.6 5,809,913 + Psyr_4898 0.72 +0.1 5,809,913 + Psyr_4898 0.72 -0.2 5,809,913 + Psyr_4898 0.72 +0.4 5,809,913 + Psyr_4898 0.72 -0.3 5,809,914 - Psyr_4898 0.73 +0.4 5,809,914 - Psyr_4898 0.73 +0.1 5,809,914 - Psyr_4898 0.73 -0.6 5,809,914 - Psyr_4898 0.73 -0.7 5,809,914 - Psyr_4898 0.73 +1.4
Or see this region's nucleotide sequence