Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4872 and Psyr_4873 are separated by 352 nucleotides Psyr_4873 and Psyr_4874 are separated by 26 nucleotides Psyr_4874 and Psyr_4875 overlap by 4 nucleotides Psyr_4875 and Psyr_4876 are separated by 28 nucleotides
Psyr_4872: Psyr_4872 - conserved hypothetical protein, at 5,783,922 to 5,785,244
_4872
Psyr_4873: Psyr_4873 - Molybdenum-pterin binding protein, at 5,785,597 to 5,785,812
_4873
Psyr_4874: Psyr_4874 - ABC transporter, at 5,785,839 to 5,786,651
_4874
Psyr_4875: Psyr_4875 - Binding-protein-dependent transport systems inner membrane component, at 5,786,648 to 5,787,445
_4875
Psyr_4876: Psyr_4876 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 5,787,474 to 5,788,439
_4876
Position (kb) 5785
5786
5787 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5784.888 kb on - strand, within Psyr_4872 at 5785.077 kb on + strand, within Psyr_4872 at 5785.077 kb on + strand, within Psyr_4872 at 5785.078 kb on - strand, within Psyr_4872 at 5785.111 kb on + strand, within Psyr_4872 at 5785.118 kb on + strand at 5785.192 kb on + strand at 5785.211 kb on + strand at 5785.211 kb on + strand at 5785.212 kb on - strand at 5785.230 kb on + strand at 5785.231 kb on - strand at 5785.231 kb on - strand at 5785.231 kb on - strand at 5785.244 kb on + strand at 5785.245 kb on - strand at 5785.308 kb on + strand at 5785.308 kb on + strand at 5785.334 kb on + strand at 5785.334 kb on + strand at 5785.334 kb on + strand at 5785.334 kb on + strand at 5785.334 kb on + strand at 5785.335 kb on - strand at 5785.335 kb on - strand at 5785.335 kb on - strand at 5785.349 kb on - strand at 5785.349 kb on - strand at 5785.349 kb on - strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.438 kb on + strand at 5785.439 kb on - strand at 5785.439 kb on - strand at 5785.439 kb on - strand at 5785.439 kb on - strand at 5785.439 kb on - strand at 5785.439 kb on - strand at 5785.439 kb on - strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.440 kb on + strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.441 kb on - strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.442 kb on + strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.443 kb on - strand at 5785.444 kb on + strand at 5785.444 kb on + strand at 5785.444 kb on + strand at 5785.444 kb on + strand at 5785.444 kb on + strand at 5785.445 kb on - strand at 5785.445 kb on - strand at 5785.445 kb on - strand at 5785.445 kb on - strand at 5785.445 kb on - strand at 5785.445 kb on - strand at 5785.445 kb on - strand at 5785.508 kb on - strand at 5785.532 kb on + strand at 5785.532 kb on + strand at 5785.532 kb on + strand at 5785.532 kb on + strand at 5785.533 kb on - strand at 5785.723 kb on + strand, within Psyr_4873 at 5785.723 kb on + strand, within Psyr_4873 at 5785.723 kb on + strand, within Psyr_4873 at 5785.723 kb on + strand, within Psyr_4873 at 5785.724 kb on - strand, within Psyr_4873 at 5785.724 kb on - strand, within Psyr_4873 at 5785.724 kb on - strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.741 kb on + strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.742 kb on - strand, within Psyr_4873 at 5785.807 kb on - strand at 5785.840 kb on + strand at 5785.841 kb on - strand at 5785.854 kb on + strand at 5785.854 kb on + strand at 5785.854 kb on + strand at 5785.854 kb on + strand at 5785.854 kb on + strand at 5785.855 kb on - strand at 5785.855 kb on - strand at 5785.855 kb on - strand at 5785.855 kb on - strand at 5785.855 kb on - strand at 5785.855 kb on - strand at 5785.855 kb on - strand at 5785.855 kb on - strand at 5786.093 kb on - strand, within Psyr_4874 at 5786.296 kb on - strand, within Psyr_4874 at 5786.296 kb on - strand, within Psyr_4874 at 5786.393 kb on + strand, within Psyr_4874 at 5786.744 kb on + strand, within Psyr_4875 at 5786.751 kb on + strand, within Psyr_4875 at 5786.751 kb on + strand, within Psyr_4875 at 5786.752 kb on - strand, within Psyr_4875 at 5786.752 kb on - strand, within Psyr_4875 at 5786.902 kb on + strand, within Psyr_4875 at 5786.902 kb on + strand, within Psyr_4875 at 5786.902 kb on + strand, within Psyr_4875 at 5786.902 kb on + strand, within Psyr_4875 at 5786.902 kb on + strand, within Psyr_4875 at 5786.902 kb on + strand, within Psyr_4875 at 5786.902 kb on + strand, within Psyr_4875 at 5786.903 kb on - strand, within Psyr_4875 at 5786.903 kb on - strand, within Psyr_4875 at 5786.903 kb on - strand, within Psyr_4875 at 5786.903 kb on - strand, within Psyr_4875 at 5786.903 kb on - strand, within Psyr_4875 at 5786.903 kb on - strand, within Psyr_4875 at 5786.903 kb on - strand, within Psyr_4875 at 5786.961 kb on + strand, within Psyr_4875 at 5786.961 kb on + strand, within Psyr_4875 at 5786.962 kb on - strand, within Psyr_4875 at 5786.962 kb on - strand, within Psyr_4875 at 5786.979 kb on - strand, within Psyr_4875 at 5786.979 kb on - strand, within Psyr_4875 at 5787.012 kb on + strand, within Psyr_4875 at 5787.012 kb on + strand, within Psyr_4875 at 5787.012 kb on + strand, within Psyr_4875 at 5787.012 kb on + strand, within Psyr_4875 at 5787.013 kb on - strand, within Psyr_4875 at 5787.013 kb on - strand, within Psyr_4875 at 5787.024 kb on + strand, within Psyr_4875 at 5787.024 kb on + strand, within Psyr_4875 at 5787.060 kb on - strand, within Psyr_4875 at 5787.060 kb on - strand, within Psyr_4875 at 5787.293 kb on + strand, within Psyr_4875 at 5787.293 kb on + strand, within Psyr_4875 at 5787.294 kb on - strand, within Psyr_4875 at 5787.294 kb on - strand, within Psyr_4875 at 5787.556 kb on + strand at 5787.557 kb on - strand at 5787.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 5,784,888 - Psyr_4872 0.73 +0.7 5,785,077 + Psyr_4872 0.87 -0.4 5,785,077 + Psyr_4872 0.87 +1.4 5,785,078 - Psyr_4872 0.87 +0.3 5,785,111 + Psyr_4872 0.90 -0.7 5,785,118 + +0.7 5,785,192 + -0.0 5,785,211 + +1.2 5,785,211 + +0.0 5,785,212 - +1.2 5,785,230 + -0.3 5,785,231 - +0.0 5,785,231 - -0.3 5,785,231 - -0.5 5,785,244 + +0.0 5,785,245 - +0.4 5,785,308 + -0.4 5,785,308 + +0.2 5,785,334 + +0.4 5,785,334 + -2.9 5,785,334 + -0.6 5,785,334 + -0.4 5,785,334 + -0.7 5,785,335 - -1.2 5,785,335 - +0.9 5,785,335 - -2.5 5,785,349 - +2.1 5,785,349 - +2.1 5,785,349 - +0.2 5,785,438 + +0.0 5,785,438 + +2.0 5,785,438 + -2.0 5,785,438 + +0.9 5,785,438 + -0.3 5,785,438 + +1.4 5,785,438 + -1.5 5,785,438 + +0.4 5,785,439 - -0.5 5,785,439 - +0.8 5,785,439 - +1.6 5,785,439 - +2.7 5,785,439 - -0.1 5,785,439 - -1.6 5,785,439 - -0.7 5,785,440 + +0.7 5,785,440 + -1.2 5,785,440 + -0.9 5,785,440 + +0.6 5,785,440 + -1.9 5,785,440 + -1.9 5,785,440 + -0.5 5,785,440 + +1.0 5,785,440 + -0.6 5,785,440 + -0.4 5,785,440 + +0.4 5,785,441 - +2.2 5,785,441 - -0.9 5,785,441 - -1.1 5,785,441 - +1.6 5,785,441 - -2.0 5,785,441 - -1.1 5,785,441 - +0.3 5,785,441 - -0.1 5,785,441 - -0.6 5,785,441 - -1.7 5,785,441 - -0.7 5,785,441 - -0.9 5,785,441 - +2.1 5,785,441 - +0.4 5,785,441 - +0.8 5,785,441 - +1.3 5,785,442 + +1.5 5,785,442 + +1.4 5,785,442 + -0.9 5,785,442 + +0.0 5,785,442 + -1.8 5,785,442 + +1.8 5,785,442 + -0.2 5,785,442 + +0.4 5,785,442 + -1.6 5,785,442 + -0.9 5,785,442 + +1.2 5,785,442 + -0.3 5,785,442 + +0.5 5,785,442 + +0.0 5,785,442 + -2.1 5,785,443 - -0.3 5,785,443 - +0.5 5,785,443 - -2.5 5,785,443 - +0.4 5,785,443 - +3.7 5,785,443 - +2.0 5,785,443 - +0.7 5,785,443 - -0.2 5,785,443 - -0.2 5,785,443 - +1.4 5,785,443 - -0.5 5,785,443 - +0.3 5,785,443 - +1.4 5,785,444 + -1.8 5,785,444 + +0.5 5,785,444 + -0.2 5,785,444 + +0.4 5,785,444 + -0.0 5,785,445 - +0.9 5,785,445 - -0.0 5,785,445 - -1.5 5,785,445 - +0.4 5,785,445 - +0.5 5,785,445 - -0.4 5,785,445 - +0.5 5,785,508 - -0.6 5,785,532 + -0.7 5,785,532 + +0.3 5,785,532 + +0.2 5,785,532 + +1.2 5,785,533 - -0.2 5,785,723 + Psyr_4873 0.58 +3.6 5,785,723 + Psyr_4873 0.58 -1.9 5,785,723 + Psyr_4873 0.58 -0.7 5,785,723 + Psyr_4873 0.58 +1.4 5,785,724 - Psyr_4873 0.59 +0.1 5,785,724 - Psyr_4873 0.59 -0.3 5,785,724 - Psyr_4873 0.59 -3.1 5,785,741 + Psyr_4873 0.67 +0.2 5,785,741 + Psyr_4873 0.67 -0.2 5,785,741 + Psyr_4873 0.67 -0.2 5,785,741 + Psyr_4873 0.67 +0.4 5,785,741 + Psyr_4873 0.67 +0.4 5,785,741 + Psyr_4873 0.67 -1.7 5,785,741 + Psyr_4873 0.67 +0.1 5,785,741 + Psyr_4873 0.67 +0.9 5,785,741 + Psyr_4873 0.67 -0.5 5,785,741 + Psyr_4873 0.67 -0.5 5,785,741 + Psyr_4873 0.67 +1.2 5,785,741 + Psyr_4873 0.67 +0.2 5,785,742 - Psyr_4873 0.67 +0.0 5,785,742 - Psyr_4873 0.67 +0.6 5,785,742 - Psyr_4873 0.67 -1.1 5,785,742 - Psyr_4873 0.67 +0.9 5,785,742 - Psyr_4873 0.67 -1.3 5,785,742 - Psyr_4873 0.67 -0.7 5,785,742 - Psyr_4873 0.67 -0.8 5,785,742 - Psyr_4873 0.67 -1.3 5,785,742 - Psyr_4873 0.67 +1.3 5,785,742 - Psyr_4873 0.67 +0.4 5,785,742 - Psyr_4873 0.67 -1.1 5,785,742 - Psyr_4873 0.67 -1.9 5,785,807 - -0.5 5,785,840 + +2.0 5,785,841 - -0.5 5,785,854 + +0.7 5,785,854 + -0.4 5,785,854 + -0.4 5,785,854 + -0.5 5,785,854 + +0.4 5,785,855 - -0.3 5,785,855 - -0.4 5,785,855 - +1.2 5,785,855 - -0.6 5,785,855 - +0.2 5,785,855 - -0.6 5,785,855 - +0.0 5,785,855 - -0.7 5,786,093 - Psyr_4874 0.31 -0.3 5,786,296 - Psyr_4874 0.56 -1.6 5,786,296 - Psyr_4874 0.56 -0.8 5,786,393 + Psyr_4874 0.68 -2.5 5,786,744 + Psyr_4875 0.12 +2.0 5,786,751 + Psyr_4875 0.13 +2.4 5,786,751 + Psyr_4875 0.13 -0.5 5,786,752 - Psyr_4875 0.13 -0.7 5,786,752 - Psyr_4875 0.13 +0.0 5,786,902 + Psyr_4875 0.32 +0.7 5,786,902 + Psyr_4875 0.32 +0.3 5,786,902 + Psyr_4875 0.32 -0.6 5,786,902 + Psyr_4875 0.32 +1.0 5,786,902 + Psyr_4875 0.32 -0.3 5,786,902 + Psyr_4875 0.32 +0.8 5,786,902 + Psyr_4875 0.32 +0.4 5,786,903 - Psyr_4875 0.32 -1.4 5,786,903 - Psyr_4875 0.32 -1.5 5,786,903 - Psyr_4875 0.32 +0.4 5,786,903 - Psyr_4875 0.32 +0.4 5,786,903 - Psyr_4875 0.32 +0.2 5,786,903 - Psyr_4875 0.32 +0.0 5,786,903 - Psyr_4875 0.32 -0.9 5,786,961 + Psyr_4875 0.39 +1.4 5,786,961 + Psyr_4875 0.39 +1.2 5,786,962 - Psyr_4875 0.39 +0.8 5,786,962 - Psyr_4875 0.39 +2.0 5,786,979 - Psyr_4875 0.41 -0.4 5,786,979 - Psyr_4875 0.41 +0.5 5,787,012 + Psyr_4875 0.46 +1.4 5,787,012 + Psyr_4875 0.46 +0.5 5,787,012 + Psyr_4875 0.46 +0.2 5,787,012 + Psyr_4875 0.46 -0.7 5,787,013 - Psyr_4875 0.46 -1.1 5,787,013 - Psyr_4875 0.46 -0.5 5,787,024 + Psyr_4875 0.47 +1.0 5,787,024 + Psyr_4875 0.47 +1.0 5,787,060 - Psyr_4875 0.52 -0.7 5,787,060 - Psyr_4875 0.52 +0.5 5,787,293 + Psyr_4875 0.81 -1.6 5,787,293 + Psyr_4875 0.81 +0.4 5,787,294 - Psyr_4875 0.81 -0.4 5,787,294 - Psyr_4875 0.81 +0.5 5,787,556 + -0.7 5,787,557 - +0.4 5,787,557 - +0.3
Or see this region's nucleotide sequence