Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4843 and Psyr_4844 are separated by 142 nucleotides Psyr_4844 and Psyr_4845 are separated by 13 nucleotides Psyr_4845 and Psyr_4846 are separated by 531 nucleotides
Psyr_4843: Psyr_4843 - NUDIX hydrolase, at 5,750,022 to 5,750,501
_4843
Psyr_4844: Psyr_4844 - HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2, at 5,750,644 to 5,751,300
_4844
Psyr_4845: Psyr_4845 - conserved hypothetical protein, at 5,751,314 to 5,751,742
_4845
Psyr_4846: Psyr_4846 - L-threonine ammonia-lyase, at 5,752,274 to 5,753,788
_4846
Position (kb) 5751
5752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5750.462 kb on + strand at 5750.462 kb on + strand at 5750.462 kb on + strand at 5750.462 kb on + strand at 5750.474 kb on + strand at 5750.474 kb on + strand at 5750.569 kb on + strand at 5750.569 kb on + strand at 5750.570 kb on - strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.625 kb on + strand at 5750.626 kb on - strand at 5750.626 kb on - strand at 5750.626 kb on - strand at 5750.626 kb on - strand at 5750.637 kb on + strand at 5750.638 kb on - strand at 5750.643 kb on + strand at 5750.657 kb on + strand at 5750.658 kb on - strand at 5750.658 kb on - strand at 5750.713 kb on + strand, within Psyr_4844 at 5750.713 kb on + strand, within Psyr_4844 at 5750.750 kb on - strand, within Psyr_4844 at 5750.773 kb on + strand, within Psyr_4844 at 5750.774 kb on - strand, within Psyr_4844 at 5750.774 kb on - strand, within Psyr_4844 at 5750.782 kb on + strand, within Psyr_4844 at 5750.783 kb on - strand, within Psyr_4844 at 5750.783 kb on - strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.003 kb on + strand, within Psyr_4844 at 5751.004 kb on - strand, within Psyr_4844 at 5751.004 kb on - strand, within Psyr_4844 at 5751.004 kb on - strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.166 kb on + strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.167 kb on - strand, within Psyr_4844 at 5751.243 kb on + strand at 5751.285 kb on + strand at 5751.285 kb on + strand at 5751.286 kb on - strand at 5751.311 kb on + strand at 5751.312 kb on - strand at 5751.312 kb on - strand at 5751.312 kb on - strand at 5751.474 kb on + strand at 5751.475 kb on - strand, within Psyr_4845 at 5751.475 kb on - strand, within Psyr_4845 at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.722 kb on - strand at 5751.781 kb on - strand at 5751.781 kb on - strand at 5751.795 kb on + strand at 5751.795 kb on + strand at 5751.795 kb on + strand at 5751.796 kb on - strand at 5751.796 kb on - strand at 5751.796 kb on - strand at 5751.796 kb on - strand at 5751.838 kb on + strand at 5751.838 kb on + strand at 5751.839 kb on - strand at 5751.962 kb on + strand at 5751.962 kb on + strand at 5751.964 kb on + strand at 5752.041 kb on + strand at 5752.041 kb on + strand at 5752.041 kb on + strand at 5752.041 kb on + strand at 5752.041 kb on + strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.085 kb on - strand at 5752.085 kb on - strand at 5752.085 kb on - strand at 5752.263 kb on + strand at 5752.379 kb on + strand at 5752.380 kb on - strand at 5752.380 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 5,750,462 + -0.9 5,750,462 + -0.1 5,750,462 + +0.4 5,750,462 + +0.1 5,750,474 + -0.1 5,750,474 + +0.2 5,750,569 + -1.1 5,750,569 + +0.1 5,750,570 - +2.0 5,750,577 + -1.5 5,750,577 + -1.0 5,750,577 + -0.0 5,750,577 + +0.5 5,750,577 + +0.6 5,750,577 + +0.4 5,750,577 + +0.6 5,750,577 + -1.4 5,750,577 + -0.6 5,750,578 - +1.1 5,750,578 - +1.0 5,750,578 - +0.8 5,750,578 - -0.6 5,750,578 - +0.5 5,750,625 + -0.6 5,750,626 - +1.4 5,750,626 - -2.7 5,750,626 - +0.2 5,750,626 - +0.0 5,750,637 + +0.3 5,750,638 - -1.4 5,750,643 + -0.7 5,750,657 + +1.4 5,750,658 - +1.4 5,750,658 - -0.5 5,750,713 + Psyr_4844 0.11 -1.8 5,750,713 + Psyr_4844 0.11 +0.3 5,750,750 - Psyr_4844 0.16 +1.4 5,750,773 + Psyr_4844 0.20 +1.0 5,750,774 - Psyr_4844 0.20 -3.1 5,750,774 - Psyr_4844 0.20 -1.3 5,750,782 + Psyr_4844 0.21 -0.3 5,750,783 - Psyr_4844 0.21 -1.2 5,750,783 - Psyr_4844 0.21 -1.8 5,751,003 + Psyr_4844 0.55 -2.0 5,751,003 + Psyr_4844 0.55 +2.4 5,751,003 + Psyr_4844 0.55 +1.0 5,751,003 + Psyr_4844 0.55 +0.4 5,751,003 + Psyr_4844 0.55 -1.4 5,751,003 + Psyr_4844 0.55 +1.0 5,751,004 - Psyr_4844 0.55 -1.3 5,751,004 - Psyr_4844 0.55 -1.3 5,751,004 - Psyr_4844 0.55 -2.3 5,751,166 + Psyr_4844 0.79 +0.4 5,751,166 + Psyr_4844 0.79 -0.1 5,751,166 + Psyr_4844 0.79 -1.6 5,751,166 + Psyr_4844 0.79 -0.8 5,751,166 + Psyr_4844 0.79 -3.5 5,751,166 + Psyr_4844 0.79 -0.8 5,751,166 + Psyr_4844 0.79 -0.6 5,751,166 + Psyr_4844 0.79 +0.8 5,751,166 + Psyr_4844 0.79 +5.0 5,751,166 + Psyr_4844 0.79 +0.6 5,751,167 - Psyr_4844 0.80 -0.0 5,751,167 - Psyr_4844 0.80 -3.1 5,751,167 - Psyr_4844 0.80 +2.4 5,751,167 - Psyr_4844 0.80 -1.4 5,751,167 - Psyr_4844 0.80 -0.4 5,751,167 - Psyr_4844 0.80 +0.6 5,751,167 - Psyr_4844 0.80 +0.8 5,751,167 - Psyr_4844 0.80 -0.8 5,751,167 - Psyr_4844 0.80 -0.6 5,751,167 - Psyr_4844 0.80 +0.1 5,751,167 - Psyr_4844 0.80 -0.2 5,751,167 - Psyr_4844 0.80 +2.0 5,751,243 + -0.5 5,751,285 + -0.8 5,751,285 + +1.4 5,751,286 - -0.4 5,751,311 + -0.9 5,751,312 - -1.4 5,751,312 - -2.3 5,751,312 - -0.8 5,751,474 + +1.1 5,751,475 - Psyr_4845 0.38 -1.0 5,751,475 - Psyr_4845 0.38 -0.6 5,751,718 + -0.1 5,751,718 + -3.0 5,751,718 + +0.9 5,751,718 + +0.7 5,751,718 + -0.4 5,751,718 + -1.6 5,751,718 + -0.0 5,751,718 + -0.3 5,751,718 + +0.7 5,751,719 - -0.7 5,751,719 - +0.2 5,751,719 - -0.8 5,751,719 - +0.3 5,751,719 - -0.6 5,751,719 - -0.5 5,751,719 - -1.7 5,751,719 - +0.4 5,751,722 - +1.6 5,751,781 - -0.3 5,751,781 - +0.1 5,751,795 + -0.8 5,751,795 + +0.3 5,751,795 + +0.0 5,751,796 - -0.1 5,751,796 - -0.7 5,751,796 - +0.8 5,751,796 - +0.8 5,751,838 + -0.9 5,751,838 + -1.6 5,751,839 - +0.5 5,751,962 + +0.3 5,751,962 + -0.2 5,751,964 + -1.1 5,752,041 + +0.0 5,752,041 + +1.4 5,752,041 + +0.0 5,752,041 + +1.1 5,752,041 + -0.7 5,752,042 - -1.7 5,752,042 - -0.6 5,752,042 - -0.3 5,752,042 - -0.7 5,752,042 - +0.3 5,752,042 - -0.4 5,752,042 - -0.6 5,752,085 - -3.1 5,752,085 - +1.4 5,752,085 - -1.8 5,752,263 + +0.5 5,752,379 + +0.9 5,752,380 - +0.7 5,752,380 - -0.7
Or see this region's nucleotide sequence