Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4841 and Psyr_4842 are separated by 528 nucleotides Psyr_4842 and Psyr_4843 are separated by 21 nucleotides Psyr_4843 and Psyr_4844 are separated by 142 nucleotides
Psyr_4841: Psyr_4841 - Prolipoprotein diacylglyceryl transferase, at 5,746,380 to 5,747,192
_4841
Psyr_4842: Psyr_4842 - Phosphoenolpyruvate-protein phosphotransferase, at 5,747,721 to 5,750,000
_4842
Psyr_4843: Psyr_4843 - NUDIX hydrolase, at 5,750,022 to 5,750,501
_4843
Psyr_4844: Psyr_4844 - HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2, at 5,750,644 to 5,751,300
_4844
Position (kb) 5747
5748
5749
5750
5751 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5747.334 kb on - strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.387 kb on + strand at 5747.387 kb on + strand at 5747.388 kb on - strand at 5747.388 kb on - strand at 5747.388 kb on - strand at 5747.388 kb on - strand at 5747.388 kb on - strand at 5747.419 kb on + strand at 5747.419 kb on + strand at 5747.420 kb on - strand at 5747.420 kb on - strand at 5747.420 kb on - strand at 5747.420 kb on - strand at 5747.420 kb on - strand at 5747.420 kb on - strand at 5747.446 kb on + strand at 5747.447 kb on - strand at 5747.447 kb on - strand at 5747.474 kb on - strand at 5747.520 kb on + strand at 5747.520 kb on + strand at 5747.521 kb on - strand at 5747.535 kb on + strand at 5747.535 kb on + strand at 5747.536 kb on - strand at 5747.536 kb on - strand at 5747.536 kb on - strand at 5747.616 kb on - strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.665 kb on + strand at 5747.665 kb on + strand at 5747.665 kb on + strand at 5747.665 kb on + strand at 5747.666 kb on - strand at 5747.666 kb on - strand at 5747.677 kb on + strand at 5747.678 kb on - strand at 5747.712 kb on + strand at 5747.713 kb on - strand at 5747.713 kb on - strand at 5747.713 kb on - strand at 5747.713 kb on - strand at 5747.715 kb on + strand at 5747.716 kb on - strand at 5747.716 kb on - strand at 5747.722 kb on + strand at 5748.056 kb on - strand, within Psyr_4842 at 5748.056 kb on - strand, within Psyr_4842 at 5748.107 kb on - strand, within Psyr_4842 at 5748.107 kb on - strand, within Psyr_4842 at 5748.172 kb on + strand, within Psyr_4842 at 5748.198 kb on + strand, within Psyr_4842 at 5748.448 kb on + strand, within Psyr_4842 at 5748.448 kb on + strand, within Psyr_4842 at 5748.449 kb on - strand, within Psyr_4842 at 5748.449 kb on - strand, within Psyr_4842 at 5749.057 kb on + strand, within Psyr_4842 at 5749.058 kb on - strand, within Psyr_4842 at 5749.058 kb on - strand, within Psyr_4842 at 5749.111 kb on + strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.112 kb on - strand, within Psyr_4842 at 5749.246 kb on + strand, within Psyr_4842 at 5749.246 kb on + strand, within Psyr_4842 at 5749.247 kb on - strand, within Psyr_4842 at 5749.247 kb on - strand, within Psyr_4842 at 5749.630 kb on - strand, within Psyr_4842 at 5749.630 kb on - strand, within Psyr_4842 at 5749.708 kb on + strand, within Psyr_4842 at 5749.879 kb on + strand at 5749.880 kb on - strand at 5749.928 kb on + strand at 5749.965 kb on - strand at 5749.965 kb on - strand at 5749.991 kb on + strand at 5749.992 kb on - strand at 5750.035 kb on - strand at 5750.117 kb on - strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.301 kb on + strand, within Psyr_4843 at 5750.302 kb on - strand, within Psyr_4843 at 5750.302 kb on - strand, within Psyr_4843 at 5750.302 kb on - strand, within Psyr_4843 at 5750.462 kb on + strand at 5750.462 kb on + strand at 5750.462 kb on + strand at 5750.462 kb on + strand at 5750.474 kb on + strand at 5750.474 kb on + strand at 5750.569 kb on + strand at 5750.569 kb on + strand at 5750.570 kb on - strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.577 kb on + strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.578 kb on - strand at 5750.625 kb on + strand at 5750.626 kb on - strand at 5750.626 kb on - strand at 5750.626 kb on - strand at 5750.626 kb on - strand at 5750.637 kb on + strand at 5750.638 kb on - strand at 5750.643 kb on + strand at 5750.657 kb on + strand at 5750.658 kb on - strand at 5750.658 kb on - strand at 5750.713 kb on + strand, within Psyr_4844 at 5750.713 kb on + strand, within Psyr_4844 at 5750.750 kb on - strand, within Psyr_4844 at 5750.773 kb on + strand, within Psyr_4844 at 5750.774 kb on - strand, within Psyr_4844 at 5750.774 kb on - strand, within Psyr_4844 at 5750.782 kb on + strand, within Psyr_4844 at 5750.783 kb on - strand, within Psyr_4844 at 5750.783 kb on - strand, within Psyr_4844
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 5,747,334 - -0.1 5,747,360 + +0.6 5,747,360 + +0.3 5,747,360 + -0.8 5,747,360 + -0.6 5,747,360 + -0.4 5,747,360 + -0.2 5,747,360 + -0.8 5,747,360 + +1.0 5,747,362 + -0.6 5,747,362 + -0.9 5,747,362 + -0.9 5,747,362 + -0.6 5,747,362 + +0.7 5,747,362 + +1.2 5,747,362 + -0.4 5,747,362 + +0.1 5,747,362 + -0.9 5,747,362 + -0.4 5,747,362 + +1.8 5,747,362 + +0.4 5,747,362 + +0.4 5,747,363 - +0.8 5,747,363 - +0.0 5,747,363 - +0.5 5,747,363 - -0.1 5,747,363 - -0.2 5,747,363 - +0.6 5,747,363 - +0.3 5,747,363 - +0.8 5,747,363 - -1.9 5,747,363 - -0.4 5,747,363 - +0.5 5,747,363 - -1.9 5,747,363 - -0.4 5,747,364 + -0.7 5,747,364 + +0.0 5,747,364 + -0.2 5,747,364 + +0.8 5,747,364 + -1.4 5,747,364 + -0.2 5,747,364 + -1.5 5,747,364 + +1.4 5,747,364 + -0.6 5,747,364 + -0.2 5,747,364 + -0.8 5,747,364 + -2.1 5,747,364 + -2.6 5,747,364 + -2.2 5,747,364 + -1.0 5,747,364 + -0.6 5,747,365 - -1.0 5,747,365 - -0.6 5,747,365 - -0.5 5,747,365 - +0.1 5,747,365 - +0.9 5,747,365 - -0.3 5,747,365 - +0.2 5,747,365 - -0.1 5,747,365 - -0.6 5,747,365 - -2.3 5,747,365 - +1.5 5,747,387 + +0.2 5,747,387 + +0.9 5,747,388 - +2.4 5,747,388 - +0.9 5,747,388 - -2.5 5,747,388 - +1.1 5,747,388 - -0.5 5,747,419 + -0.8 5,747,419 + -0.2 5,747,420 - -1.9 5,747,420 - +1.7 5,747,420 - -1.9 5,747,420 - -0.8 5,747,420 - -0.9 5,747,420 - +0.4 5,747,446 + -0.7 5,747,447 - -1.5 5,747,447 - -1.1 5,747,474 - +0.8 5,747,520 + +0.9 5,747,520 + -0.0 5,747,521 - -0.9 5,747,535 + +0.8 5,747,535 + +1.3 5,747,536 - +0.5 5,747,536 - -0.3 5,747,536 - -0.5 5,747,616 - -1.9 5,747,662 + +0.9 5,747,662 + -0.1 5,747,662 + -0.9 5,747,662 + +0.3 5,747,662 + -1.2 5,747,662 + -1.2 5,747,662 + +1.0 5,747,665 + +0.9 5,747,665 + +1.0 5,747,665 + -0.4 5,747,665 + +0.3 5,747,666 - -1.6 5,747,666 - +0.4 5,747,677 + -1.4 5,747,678 - -0.7 5,747,712 + -0.5 5,747,713 - +0.7 5,747,713 - -3.3 5,747,713 - -0.4 5,747,713 - -0.1 5,747,715 + +0.7 5,747,716 - -1.2 5,747,716 - -0.5 5,747,722 + -0.9 5,748,056 - Psyr_4842 0.15 -1.1 5,748,056 - Psyr_4842 0.15 -2.5 5,748,107 - Psyr_4842 0.17 -0.3 5,748,107 - Psyr_4842 0.17 -0.9 5,748,172 + Psyr_4842 0.20 +0.1 5,748,198 + Psyr_4842 0.21 -0.0 5,748,448 + Psyr_4842 0.32 -0.5 5,748,448 + Psyr_4842 0.32 -0.2 5,748,449 - Psyr_4842 0.32 -0.6 5,748,449 - Psyr_4842 0.32 -1.6 5,749,057 + Psyr_4842 0.59 -0.5 5,749,058 - Psyr_4842 0.59 +1.5 5,749,058 - Psyr_4842 0.59 -0.8 5,749,111 + Psyr_4842 0.61 +0.5 5,749,112 - Psyr_4842 0.61 -1.4 5,749,112 - Psyr_4842 0.61 -1.4 5,749,112 - Psyr_4842 0.61 -0.2 5,749,112 - Psyr_4842 0.61 -2.4 5,749,112 - Psyr_4842 0.61 -3.1 5,749,112 - Psyr_4842 0.61 -2.5 5,749,246 + Psyr_4842 0.67 -1.6 5,749,246 + Psyr_4842 0.67 -1.1 5,749,247 - Psyr_4842 0.67 -2.8 5,749,247 - Psyr_4842 0.67 -1.5 5,749,630 - Psyr_4842 0.84 -0.0 5,749,630 - Psyr_4842 0.84 -0.5 5,749,708 + Psyr_4842 0.87 -1.1 5,749,879 + -0.0 5,749,880 - -1.3 5,749,928 + -2.1 5,749,965 - -0.4 5,749,965 - +0.1 5,749,991 + -2.2 5,749,992 - -0.1 5,750,035 - +3.4 5,750,117 - Psyr_4843 0.20 -0.4 5,750,301 + Psyr_4843 0.58 +0.4 5,750,301 + Psyr_4843 0.58 -0.8 5,750,301 + Psyr_4843 0.58 -0.2 5,750,301 + Psyr_4843 0.58 +0.4 5,750,301 + Psyr_4843 0.58 +0.0 5,750,301 + Psyr_4843 0.58 -0.8 5,750,301 + Psyr_4843 0.58 +0.3 5,750,301 + Psyr_4843 0.58 -1.6 5,750,301 + Psyr_4843 0.58 -0.2 5,750,301 + Psyr_4843 0.58 -0.3 5,750,301 + Psyr_4843 0.58 -0.2 5,750,301 + Psyr_4843 0.58 -0.6 5,750,302 - Psyr_4843 0.58 +1.0 5,750,302 - Psyr_4843 0.58 -0.8 5,750,302 - Psyr_4843 0.58 -0.3 5,750,462 + -0.9 5,750,462 + -0.1 5,750,462 + +0.4 5,750,462 + +0.1 5,750,474 + -0.1 5,750,474 + +0.2 5,750,569 + -1.1 5,750,569 + +0.1 5,750,570 - +2.0 5,750,577 + -1.5 5,750,577 + -1.0 5,750,577 + -0.0 5,750,577 + +0.5 5,750,577 + +0.6 5,750,577 + +0.4 5,750,577 + +0.6 5,750,577 + -1.4 5,750,577 + -0.6 5,750,578 - +1.1 5,750,578 - +1.0 5,750,578 - +0.8 5,750,578 - -0.6 5,750,578 - +0.5 5,750,625 + -0.6 5,750,626 - +1.4 5,750,626 - -2.7 5,750,626 - +0.2 5,750,626 - +0.0 5,750,637 + +0.3 5,750,638 - -1.4 5,750,643 + -0.7 5,750,657 + +1.4 5,750,658 - +1.4 5,750,658 - -0.5 5,750,713 + Psyr_4844 0.11 -1.8 5,750,713 + Psyr_4844 0.11 +0.3 5,750,750 - Psyr_4844 0.16 +1.4 5,750,773 + Psyr_4844 0.20 +1.0 5,750,774 - Psyr_4844 0.20 -3.1 5,750,774 - Psyr_4844 0.20 -1.3 5,750,782 + Psyr_4844 0.21 -0.3 5,750,783 - Psyr_4844 0.21 -1.2 5,750,783 - Psyr_4844 0.21 -1.8
Or see this region's nucleotide sequence