Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4829 and Psyr_4830 are separated by 73 nucleotides Psyr_4830 and Psyr_4831 overlap by 4 nucleotides Psyr_4831 and Psyr_4832 are separated by 12 nucleotides
Psyr_4829: Psyr_4829 - Substrate-binding region of ABC-type glycine betaine transport system, at 5,731,830 to 5,732,798
_4829
Psyr_4830: Psyr_4830 - Binding-protein-dependent transport systems inner membrane component, at 5,732,872 to 5,733,723
_4830
Psyr_4831: Psyr_4831 - ABC transporter, at 5,733,720 to 5,734,550
_4831
Psyr_4832: Psyr_4832 - histidine ammonia-lyase, at 5,734,563 to 5,736,104
_4832
Position (kb) 5732
5733
5734 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5731.949 kb on + strand, within Psyr_4829 at 5731.950 kb on - strand, within Psyr_4829 at 5731.981 kb on + strand, within Psyr_4829 at 5731.981 kb on + strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5732.188 kb on + strand, within Psyr_4829 at 5732.190 kb on + strand, within Psyr_4829 at 5732.191 kb on - strand, within Psyr_4829 at 5732.191 kb on - strand, within Psyr_4829 at 5732.328 kb on + strand, within Psyr_4829 at 5732.328 kb on + strand, within Psyr_4829 at 5732.328 kb on + strand, within Psyr_4829 at 5732.329 kb on - strand, within Psyr_4829 at 5732.329 kb on - strand, within Psyr_4829 at 5732.329 kb on - strand, within Psyr_4829 at 5732.329 kb on - strand, within Psyr_4829 at 5732.329 kb on - strand, within Psyr_4829 at 5732.403 kb on + strand, within Psyr_4829 at 5732.403 kb on + strand, within Psyr_4829 at 5732.403 kb on + strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.460 kb on + strand, within Psyr_4829 at 5732.460 kb on + strand, within Psyr_4829 at 5732.460 kb on + strand, within Psyr_4829 at 5732.460 kb on + strand, within Psyr_4829 at 5732.460 kb on + strand, within Psyr_4829 at 5732.487 kb on + strand, within Psyr_4829 at 5732.487 kb on + strand, within Psyr_4829 at 5732.487 kb on + strand, within Psyr_4829 at 5732.487 kb on + strand, within Psyr_4829 at 5732.487 kb on + strand, within Psyr_4829 at 5732.488 kb on - strand, within Psyr_4829 at 5732.488 kb on - strand, within Psyr_4829 at 5732.488 kb on - strand, within Psyr_4829 at 5732.488 kb on - strand, within Psyr_4829 at 5732.488 kb on - strand, within Psyr_4829 at 5732.489 kb on - strand, within Psyr_4829 at 5732.490 kb on + strand, within Psyr_4829 at 5732.490 kb on + strand, within Psyr_4829 at 5732.490 kb on + strand, within Psyr_4829 at 5732.491 kb on - strand, within Psyr_4829 at 5732.491 kb on - strand, within Psyr_4829 at 5732.491 kb on - strand, within Psyr_4829 at 5732.491 kb on - strand, within Psyr_4829 at 5732.491 kb on - strand, within Psyr_4829 at 5732.796 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.872 kb on - strand at 5732.872 kb on - strand at 5732.945 kb on - strand at 5732.982 kb on - strand, within Psyr_4830 at 5733.296 kb on - strand, within Psyr_4830 at 5733.296 kb on - strand, within Psyr_4830 at 5733.361 kb on + strand, within Psyr_4830 at 5733.361 kb on + strand, within Psyr_4830 at 5733.853 kb on + strand, within Psyr_4831 at 5733.854 kb on - strand, within Psyr_4831 at 5734.015 kb on - strand, within Psyr_4831 at 5734.187 kb on - strand, within Psyr_4831 at 5734.213 kb on - strand, within Psyr_4831 at 5734.249 kb on + strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.472 kb on + strand at 5734.509 kb on + strand at 5734.510 kb on - strand at 5734.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 5,731,949 + Psyr_4829 0.12 -1.9 5,731,950 - Psyr_4829 0.12 +0.3 5,731,981 + Psyr_4829 0.16 -1.1 5,731,981 + Psyr_4829 0.16 -0.3 5,731,982 - Psyr_4829 0.16 -1.1 5,731,982 - Psyr_4829 0.16 +0.6 5,731,982 - Psyr_4829 0.16 -0.7 5,731,982 - Psyr_4829 0.16 -0.4 5,731,982 - Psyr_4829 0.16 +1.4 5,731,982 - Psyr_4829 0.16 -0.9 5,732,188 + Psyr_4829 0.37 -0.0 5,732,190 + Psyr_4829 0.37 +0.0 5,732,191 - Psyr_4829 0.37 +0.2 5,732,191 - Psyr_4829 0.37 -0.6 5,732,328 + Psyr_4829 0.51 -1.7 5,732,328 + Psyr_4829 0.51 -0.5 5,732,328 + Psyr_4829 0.51 +0.1 5,732,329 - Psyr_4829 0.51 -1.2 5,732,329 - Psyr_4829 0.51 -0.4 5,732,329 - Psyr_4829 0.51 +0.5 5,732,329 - Psyr_4829 0.51 -0.9 5,732,329 - Psyr_4829 0.51 -1.8 5,732,403 + Psyr_4829 0.59 -1.2 5,732,403 + Psyr_4829 0.59 -1.5 5,732,403 + Psyr_4829 0.59 +1.1 5,732,404 - Psyr_4829 0.59 -0.1 5,732,404 - Psyr_4829 0.59 -0.7 5,732,404 - Psyr_4829 0.59 -1.4 5,732,404 - Psyr_4829 0.59 +0.3 5,732,404 - Psyr_4829 0.59 -0.5 5,732,404 - Psyr_4829 0.59 +0.0 5,732,460 + Psyr_4829 0.65 -1.5 5,732,460 + Psyr_4829 0.65 -1.7 5,732,460 + Psyr_4829 0.65 -0.5 5,732,460 + Psyr_4829 0.65 +1.2 5,732,460 + Psyr_4829 0.65 -0.5 5,732,487 + Psyr_4829 0.68 +0.3 5,732,487 + Psyr_4829 0.68 -1.2 5,732,487 + Psyr_4829 0.68 -1.1 5,732,487 + Psyr_4829 0.68 -0.2 5,732,487 + Psyr_4829 0.68 -3.4 5,732,488 - Psyr_4829 0.68 +0.1 5,732,488 - Psyr_4829 0.68 +0.4 5,732,488 - Psyr_4829 0.68 +0.2 5,732,488 - Psyr_4829 0.68 -0.6 5,732,488 - Psyr_4829 0.68 -0.1 5,732,489 - Psyr_4829 0.68 +1.1 5,732,490 + Psyr_4829 0.68 -0.6 5,732,490 + Psyr_4829 0.68 +0.4 5,732,490 + Psyr_4829 0.68 -0.6 5,732,491 - Psyr_4829 0.68 +1.4 5,732,491 - Psyr_4829 0.68 +0.0 5,732,491 - Psyr_4829 0.68 -1.9 5,732,491 - Psyr_4829 0.68 -1.9 5,732,491 - Psyr_4829 0.68 -1.1 5,732,796 + -0.1 5,732,871 + +0.4 5,732,871 + +1.7 5,732,871 + +0.0 5,732,871 + +0.1 5,732,871 + -0.8 5,732,872 - +2.2 5,732,872 - -0.8 5,732,945 - -1.2 5,732,982 - Psyr_4830 0.13 +1.4 5,733,296 - Psyr_4830 0.50 -0.7 5,733,296 - Psyr_4830 0.50 -0.9 5,733,361 + Psyr_4830 0.57 -0.6 5,733,361 + Psyr_4830 0.57 -1.2 5,733,853 + Psyr_4831 0.16 -1.5 5,733,854 - Psyr_4831 0.16 -1.8 5,734,015 - Psyr_4831 0.35 -0.9 5,734,187 - Psyr_4831 0.56 +0.6 5,734,213 - Psyr_4831 0.59 -1.6 5,734,249 + Psyr_4831 0.64 -1.1 5,734,250 - Psyr_4831 0.64 -1.4 5,734,250 - Psyr_4831 0.64 +0.8 5,734,250 - Psyr_4831 0.64 -0.5 5,734,250 - Psyr_4831 0.64 -0.0 5,734,250 - Psyr_4831 0.64 -1.8 5,734,472 + -1.6 5,734,509 + -0.3 5,734,510 - -1.6 5,734,549 - +0.7
Or see this region's nucleotide sequence