Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4799 and Psyr_4800 overlap by 4 nucleotides Psyr_4800 and Psyr_4801 are separated by 253 nucleotides Psyr_4801 and Psyr_4802 are separated by 67 nucleotides
Psyr_4799: Psyr_4799 - Heavy metal sensor kinase, at 5,688,372 to 5,689,763
_4799
Psyr_4800: Psyr_4800 - Heavy metal response regulator, at 5,689,760 to 5,690,434
_4800
Psyr_4801: Psyr_4801 - Outer membrane efflux protein, at 5,690,688 to 5,691,914
_4801
Psyr_4802: Psyr_4802 - Secretion protein HlyD, at 5,691,982 to 5,693,256
_4802
Position (kb) 5690
5691
5692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5689.779 kb on - strand at 5690.145 kb on + strand, within Psyr_4800 at 5690.146 kb on - strand, within Psyr_4800 at 5690.146 kb on - strand, within Psyr_4800 at 5690.301 kb on + strand, within Psyr_4800 at 5690.301 kb on + strand, within Psyr_4800 at 5690.322 kb on + strand, within Psyr_4800 at 5690.322 kb on + strand, within Psyr_4800 at 5690.322 kb on + strand, within Psyr_4800 at 5690.322 kb on + strand, within Psyr_4800 at 5690.322 kb on + strand, within Psyr_4800 at 5690.322 kb on + strand, within Psyr_4800 at 5690.323 kb on - strand, within Psyr_4800 at 5690.323 kb on - strand, within Psyr_4800 at 5690.323 kb on - strand, within Psyr_4800 at 5690.323 kb on - strand, within Psyr_4800 at 5690.324 kb on + strand, within Psyr_4800 at 5690.325 kb on - strand, within Psyr_4800 at 5690.325 kb on - strand, within Psyr_4800 at 5690.325 kb on - strand, within Psyr_4800 at 5690.325 kb on - strand, within Psyr_4800 at 5690.391 kb on + strand at 5690.391 kb on + strand at 5690.391 kb on + strand at 5690.392 kb on - strand at 5690.392 kb on - strand at 5690.392 kb on - strand at 5690.392 kb on - strand at 5690.417 kb on + strand at 5690.418 kb on - strand at 5690.420 kb on + strand at 5690.420 kb on + strand at 5690.420 kb on + strand at 5690.421 kb on - strand at 5690.421 kb on - strand at 5690.421 kb on - strand at 5690.421 kb on - strand at 5690.483 kb on + strand at 5690.483 kb on + strand at 5690.484 kb on - strand at 5690.523 kb on + strand at 5690.546 kb on + strand at 5690.547 kb on - strand at 5690.560 kb on + strand at 5690.561 kb on - strand at 5690.561 kb on - strand at 5690.603 kb on + strand at 5690.604 kb on - strand at 5690.604 kb on - strand at 5690.604 kb on - strand at 5690.604 kb on - strand at 5690.604 kb on - strand at 5690.648 kb on + strand at 5690.648 kb on + strand at 5690.648 kb on + strand at 5690.648 kb on + strand at 5690.648 kb on + strand at 5690.649 kb on - strand at 5690.649 kb on - strand at 5691.066 kb on + strand, within Psyr_4801 at 5691.067 kb on - strand, within Psyr_4801 at 5691.318 kb on + strand, within Psyr_4801 at 5691.318 kb on + strand, within Psyr_4801 at 5691.318 kb on + strand, within Psyr_4801 at 5691.319 kb on - strand, within Psyr_4801 at 5691.319 kb on - strand, within Psyr_4801 at 5691.825 kb on + strand at 5691.826 kb on - strand at 5691.826 kb on - strand at 5691.877 kb on + strand at 5691.877 kb on + strand at 5691.878 kb on - strand at 5691.878 kb on - strand at 5692.576 kb on + strand, within Psyr_4802 at 5692.576 kb on + strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 5,689,779 - +0.4 5,690,145 + Psyr_4800 0.57 -0.1 5,690,146 - Psyr_4800 0.57 +0.4 5,690,146 - Psyr_4800 0.57 +0.7 5,690,301 + Psyr_4800 0.80 +0.3 5,690,301 + Psyr_4800 0.80 +0.9 5,690,322 + Psyr_4800 0.83 -2.1 5,690,322 + Psyr_4800 0.83 -0.4 5,690,322 + Psyr_4800 0.83 -0.4 5,690,322 + Psyr_4800 0.83 -0.2 5,690,322 + Psyr_4800 0.83 -0.9 5,690,322 + Psyr_4800 0.83 +0.3 5,690,323 - Psyr_4800 0.83 +0.6 5,690,323 - Psyr_4800 0.83 +0.1 5,690,323 - Psyr_4800 0.83 +0.7 5,690,323 - Psyr_4800 0.83 +0.7 5,690,324 + Psyr_4800 0.84 -0.2 5,690,325 - Psyr_4800 0.84 -2.9 5,690,325 - Psyr_4800 0.84 +0.5 5,690,325 - Psyr_4800 0.84 +0.2 5,690,325 - Psyr_4800 0.84 +1.7 5,690,391 + +0.4 5,690,391 + +0.3 5,690,391 + -1.3 5,690,392 - +3.4 5,690,392 - +0.7 5,690,392 - -2.2 5,690,392 - -1.0 5,690,417 + -0.4 5,690,418 - -0.5 5,690,420 + +0.6 5,690,420 + -1.1 5,690,420 + +1.0 5,690,421 - -0.2 5,690,421 - -0.2 5,690,421 - +0.7 5,690,421 - +0.7 5,690,483 + -0.5 5,690,483 + +0.6 5,690,484 - -1.0 5,690,523 + +1.4 5,690,546 + -0.6 5,690,547 - -0.4 5,690,560 + +2.4 5,690,561 - -0.3 5,690,561 - -0.9 5,690,603 + -0.5 5,690,604 - +0.1 5,690,604 - -0.7 5,690,604 - +0.1 5,690,604 - -0.1 5,690,604 - +0.5 5,690,648 + +1.1 5,690,648 + +0.8 5,690,648 + +0.6 5,690,648 + -0.3 5,690,648 + +0.0 5,690,649 - +2.4 5,690,649 - -0.2 5,691,066 + Psyr_4801 0.31 +2.2 5,691,067 - Psyr_4801 0.31 -1.7 5,691,318 + Psyr_4801 0.51 -0.8 5,691,318 + Psyr_4801 0.51 +0.4 5,691,318 + Psyr_4801 0.51 -1.2 5,691,319 - Psyr_4801 0.51 +1.8 5,691,319 - Psyr_4801 0.51 +0.5 5,691,825 + -2.3 5,691,826 - -0.4 5,691,826 - -0.2 5,691,877 + -0.7 5,691,877 + +0.2 5,691,878 - +0.5 5,691,878 - +0.7 5,692,576 + Psyr_4802 0.47 -0.0 5,692,576 + Psyr_4802 0.47 -0.6 5,692,577 - Psyr_4802 0.47 -0.3 5,692,577 - Psyr_4802 0.47 -0.5 5,692,577 - Psyr_4802 0.47 -1.3 5,692,577 - Psyr_4802 0.47 +0.0
Or see this region's nucleotide sequence