Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4729 and Psyr_4730 are separated by 121 nucleotides Psyr_4730 and Psyr_4731 overlap by 4 nucleotides Psyr_4731 and Psyr_4732 are separated by 243 nucleotides
Psyr_4729: Psyr_4729 - PepSY-associated TM helix, at 5,606,522 to 5,607,655
_4729
Psyr_4730: Psyr_4730 - FecR protein, at 5,607,777 to 5,608,760
_4730
Psyr_4731: Psyr_4731 - Sigma-70 region 2:Sigma-70 region 4, at 5,608,757 to 5,609,275
_4731
Psyr_4732: Psyr_4732 - choline dehydrogenase, at 5,609,519 to 5,611,225
_4732
Position (kb) 5607
5608
5609 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5606.794 kb on + strand, within Psyr_4729 at 5606.794 kb on + strand, within Psyr_4729 at 5606.795 kb on - strand, within Psyr_4729 at 5606.795 kb on - strand, within Psyr_4729 at 5606.795 kb on - strand, within Psyr_4729 at 5606.949 kb on + strand, within Psyr_4729 at 5606.950 kb on - strand, within Psyr_4729 at 5607.062 kb on + strand, within Psyr_4729 at 5607.063 kb on - strand, within Psyr_4729 at 5607.097 kb on + strand, within Psyr_4729 at 5607.109 kb on + strand, within Psyr_4729 at 5607.109 kb on + strand, within Psyr_4729 at 5607.109 kb on + strand, within Psyr_4729 at 5607.110 kb on - strand, within Psyr_4729 at 5607.110 kb on - strand, within Psyr_4729 at 5607.156 kb on + strand, within Psyr_4729 at 5607.156 kb on + strand, within Psyr_4729 at 5607.157 kb on - strand, within Psyr_4729 at 5607.237 kb on + strand, within Psyr_4729 at 5607.237 kb on + strand, within Psyr_4729 at 5607.237 kb on + strand, within Psyr_4729 at 5607.237 kb on + strand, within Psyr_4729 at 5607.237 kb on + strand, within Psyr_4729 at 5607.237 kb on + strand, within Psyr_4729 at 5607.238 kb on - strand, within Psyr_4729 at 5607.238 kb on - strand, within Psyr_4729 at 5607.238 kb on - strand, within Psyr_4729 at 5607.238 kb on - strand, within Psyr_4729 at 5607.238 kb on - strand, within Psyr_4729 at 5607.245 kb on + strand, within Psyr_4729 at 5607.245 kb on + strand, within Psyr_4729 at 5607.245 kb on + strand, within Psyr_4729 at 5607.245 kb on + strand, within Psyr_4729 at 5607.245 kb on + strand, within Psyr_4729 at 5607.246 kb on - strand, within Psyr_4729 at 5607.246 kb on - strand, within Psyr_4729 at 5607.246 kb on - strand, within Psyr_4729 at 5607.246 kb on - strand, within Psyr_4729 at 5607.418 kb on - strand, within Psyr_4729 at 5607.508 kb on - strand, within Psyr_4729 at 5607.508 kb on - strand, within Psyr_4729 at 5607.616 kb on + strand at 5607.616 kb on + strand at 5607.617 kb on - strand at 5607.617 kb on - strand at 5607.617 kb on - strand at 5607.660 kb on + strand at 5607.710 kb on + strand at 5607.710 kb on + strand at 5607.710 kb on + strand at 5607.710 kb on + strand at 5607.710 kb on + strand at 5607.710 kb on + strand at 5607.710 kb on + strand at 5607.710 kb on + strand at 5607.710 kb on + strand at 5607.710 kb on + strand at 5607.710 kb on + strand at 5607.710 kb on + strand at 5607.711 kb on - strand at 5607.711 kb on - strand at 5607.711 kb on - strand at 5607.711 kb on - strand at 5607.711 kb on - strand at 5607.711 kb on - strand at 5607.711 kb on - strand at 5607.716 kb on + strand at 5607.716 kb on + strand at 5607.716 kb on + strand at 5607.717 kb on - strand at 5607.771 kb on + strand at 5607.771 kb on + strand at 5607.772 kb on - strand at 5607.852 kb on + strand at 5607.852 kb on + strand at 5607.853 kb on - strand at 5607.853 kb on - strand at 5607.853 kb on - strand at 5607.853 kb on - strand at 5607.853 kb on - strand at 5607.853 kb on - strand at 5608.297 kb on - strand, within Psyr_4730 at 5608.297 kb on - strand, within Psyr_4730 at 5608.297 kb on - strand, within Psyr_4730 at 5608.785 kb on + strand at 5608.786 kb on - strand at 5608.786 kb on - strand at 5608.812 kb on + strand, within Psyr_4731 at 5608.812 kb on + strand, within Psyr_4731 at 5608.887 kb on + strand, within Psyr_4731 at 5608.887 kb on + strand, within Psyr_4731 at 5608.889 kb on + strand, within Psyr_4731 at 5608.889 kb on + strand, within Psyr_4731 at 5608.890 kb on - strand, within Psyr_4731 at 5608.890 kb on - strand, within Psyr_4731 at 5608.890 kb on - strand, within Psyr_4731 at 5609.022 kb on + strand, within Psyr_4731 at 5609.022 kb on + strand, within Psyr_4731 at 5609.230 kb on - strand at 5609.252 kb on - strand at 5609.427 kb on + strand at 5609.427 kb on + strand at 5609.436 kb on + strand at 5609.584 kb on - strand at 5609.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 5,606,794 + Psyr_4729 0.24 +0.5 5,606,794 + Psyr_4729 0.24 -0.7 5,606,795 - Psyr_4729 0.24 +1.7 5,606,795 - Psyr_4729 0.24 -0.1 5,606,795 - Psyr_4729 0.24 -1.0 5,606,949 + Psyr_4729 0.38 +0.2 5,606,950 - Psyr_4729 0.38 -1.0 5,607,062 + Psyr_4729 0.48 +0.3 5,607,063 - Psyr_4729 0.48 -0.4 5,607,097 + Psyr_4729 0.51 -0.8 5,607,109 + Psyr_4729 0.52 -3.0 5,607,109 + Psyr_4729 0.52 +0.1 5,607,109 + Psyr_4729 0.52 +2.6 5,607,110 - Psyr_4729 0.52 +1.2 5,607,110 - Psyr_4729 0.52 +1.1 5,607,156 + Psyr_4729 0.56 -0.4 5,607,156 + Psyr_4729 0.56 +0.9 5,607,157 - Psyr_4729 0.56 +0.6 5,607,237 + Psyr_4729 0.63 +0.6 5,607,237 + Psyr_4729 0.63 -1.5 5,607,237 + Psyr_4729 0.63 -1.2 5,607,237 + Psyr_4729 0.63 -0.8 5,607,237 + Psyr_4729 0.63 -0.1 5,607,237 + Psyr_4729 0.63 +0.6 5,607,238 - Psyr_4729 0.63 -0.1 5,607,238 - Psyr_4729 0.63 -1.2 5,607,238 - Psyr_4729 0.63 +1.7 5,607,238 - Psyr_4729 0.63 -0.7 5,607,238 - Psyr_4729 0.63 +0.1 5,607,245 + Psyr_4729 0.64 +0.5 5,607,245 + Psyr_4729 0.64 -0.3 5,607,245 + Psyr_4729 0.64 -1.6 5,607,245 + Psyr_4729 0.64 +0.0 5,607,245 + Psyr_4729 0.64 -0.2 5,607,246 - Psyr_4729 0.64 +0.6 5,607,246 - Psyr_4729 0.64 +0.1 5,607,246 - Psyr_4729 0.64 -1.0 5,607,246 - Psyr_4729 0.64 -1.2 5,607,418 - Psyr_4729 0.79 -1.8 5,607,508 - Psyr_4729 0.87 +0.3 5,607,508 - Psyr_4729 0.87 +0.4 5,607,616 + +0.5 5,607,616 + +0.5 5,607,617 - +0.4 5,607,617 - -0.1 5,607,617 - +0.3 5,607,660 + -0.7 5,607,710 + -0.8 5,607,710 + +0.7 5,607,710 + -0.5 5,607,710 + +0.3 5,607,710 + -1.7 5,607,710 + -0.7 5,607,710 + -0.0 5,607,710 + -0.7 5,607,710 + -0.2 5,607,710 + +0.8 5,607,710 + +0.6 5,607,710 + -0.0 5,607,711 - +0.3 5,607,711 - +1.0 5,607,711 - -1.1 5,607,711 - +0.1 5,607,711 - +0.3 5,607,711 - -0.2 5,607,711 - -1.7 5,607,716 + +1.8 5,607,716 + +0.3 5,607,716 + -0.0 5,607,717 - +0.8 5,607,771 + +0.8 5,607,771 + +0.5 5,607,772 - -0.4 5,607,852 + +1.3 5,607,852 + -0.2 5,607,853 - -0.2 5,607,853 - -1.2 5,607,853 - +0.2 5,607,853 - +0.3 5,607,853 - +1.3 5,607,853 - -0.9 5,608,297 - Psyr_4730 0.53 -1.3 5,608,297 - Psyr_4730 0.53 -1.4 5,608,297 - Psyr_4730 0.53 +0.2 5,608,785 + +1.1 5,608,786 - -0.9 5,608,786 - +1.0 5,608,812 + Psyr_4731 0.11 +0.9 5,608,812 + Psyr_4731 0.11 -1.3 5,608,887 + Psyr_4731 0.25 +0.9 5,608,887 + Psyr_4731 0.25 +0.9 5,608,889 + Psyr_4731 0.25 -0.0 5,608,889 + Psyr_4731 0.25 -0.6 5,608,890 - Psyr_4731 0.26 +0.2 5,608,890 - Psyr_4731 0.26 -1.1 5,608,890 - Psyr_4731 0.26 +0.2 5,609,022 + Psyr_4731 0.51 -0.4 5,609,022 + Psyr_4731 0.51 +3.4 5,609,230 - -0.3 5,609,252 - -1.3 5,609,427 + -0.3 5,609,427 + -0.7 5,609,436 + +0.5 5,609,584 - -0.3 5,609,584 - -0.6
Or see this region's nucleotide sequence