Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4713 and Psyr_4714 are separated by 15 nucleotides Psyr_4714 and Psyr_4715 overlap by 4 nucleotides
Psyr_4713: Psyr_4713 - Sarcosine oxidase, beta subunit, heterotetrameric, at 5,584,702 to 5,585,952
_4713
Psyr_4714: Psyr_4714 - Sarcosine oxidase, delta subunit, heterotetrameric, at 5,585,968 to 5,586,264
_4714
Psyr_4715: Psyr_4715 - Sarcosine oxidase, alpha subunit, heterotetrameric, at 5,586,261 to 5,589,281
_4715
Position (kb) 5585
5586
5587 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5584.978 kb on + strand, within Psyr_4713 at 5584.978 kb on + strand, within Psyr_4713 at 5584.979 kb on - strand, within Psyr_4713 at 5585.026 kb on + strand, within Psyr_4713 at 5585.026 kb on + strand, within Psyr_4713 at 5585.026 kb on + strand, within Psyr_4713 at 5585.026 kb on + strand, within Psyr_4713 at 5585.027 kb on - strand, within Psyr_4713 at 5585.027 kb on - strand, within Psyr_4713 at 5585.027 kb on - strand, within Psyr_4713 at 5585.027 kb on - strand, within Psyr_4713 at 5585.056 kb on + strand, within Psyr_4713 at 5585.056 kb on + strand, within Psyr_4713 at 5585.057 kb on - strand, within Psyr_4713 at 5585.057 kb on - strand, within Psyr_4713 at 5585.057 kb on - strand, within Psyr_4713 at 5585.548 kb on + strand, within Psyr_4713 at 5585.548 kb on + strand, within Psyr_4713 at 5585.549 kb on - strand, within Psyr_4713 at 5585.549 kb on - strand, within Psyr_4713 at 5585.976 kb on + strand at 5585.976 kb on + strand at 5585.976 kb on + strand at 5585.976 kb on + strand at 5585.976 kb on + strand at 5585.976 kb on + strand at 5585.976 kb on + strand at 5585.977 kb on - strand at 5585.977 kb on - strand at 5585.977 kb on - strand at 5586.094 kb on + strand, within Psyr_4714 at 5586.094 kb on + strand, within Psyr_4714 at 5586.094 kb on + strand, within Psyr_4714 at 5586.094 kb on + strand, within Psyr_4714 at 5586.094 kb on + strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.143 kb on + strand, within Psyr_4714 at 5586.143 kb on + strand, within Psyr_4714 at 5586.167 kb on - strand, within Psyr_4714 at 5586.167 kb on - strand, within Psyr_4714 at 5586.196 kb on + strand, within Psyr_4714 at 5586.196 kb on + strand, within Psyr_4714 at 5586.197 kb on - strand, within Psyr_4714 at 5586.260 kb on + strand at 5586.260 kb on + strand at 5586.260 kb on + strand at 5586.260 kb on + strand at 5586.260 kb on + strand at 5586.260 kb on + strand at 5586.260 kb on + strand at 5586.261 kb on - strand at 5586.261 kb on - strand at 5586.261 kb on - strand at 5586.323 kb on + strand at 5586.324 kb on - strand at 5586.399 kb on - strand at 5586.420 kb on + strand at 5586.420 kb on + strand at 5586.421 kb on - strand at 5586.421 kb on - strand at 5586.538 kb on - strand at 5586.642 kb on + strand, within Psyr_4715 at 5586.642 kb on + strand, within Psyr_4715 at 5586.643 kb on - strand, within Psyr_4715 at 5586.645 kb on + strand, within Psyr_4715 at 5586.646 kb on - strand, within Psyr_4715 at 5586.660 kb on + strand, within Psyr_4715 at 5586.661 kb on - strand, within Psyr_4715 at 5586.684 kb on + strand, within Psyr_4715 at 5586.685 kb on - strand, within Psyr_4715 at 5586.693 kb on + strand, within Psyr_4715 at 5586.693 kb on + strand, within Psyr_4715 at 5586.694 kb on - strand, within Psyr_4715 at 5586.694 kb on - strand, within Psyr_4715 at 5586.694 kb on - strand, within Psyr_4715 at 5586.694 kb on - strand, within Psyr_4715 at 5586.750 kb on + strand, within Psyr_4715 at 5586.751 kb on - strand, within Psyr_4715 at 5587.016 kb on + strand, within Psyr_4715 at 5587.016 kb on + strand, within Psyr_4715 at 5587.017 kb on - strand, within Psyr_4715 at 5587.118 kb on - strand, within Psyr_4715 at 5587.155 kb on + strand, within Psyr_4715 at 5587.155 kb on + strand, within Psyr_4715 at 5587.156 kb on - strand, within Psyr_4715 at 5587.206 kb on + strand, within Psyr_4715 at 5587.207 kb on - strand, within Psyr_4715 at 5587.207 kb on - strand, within Psyr_4715 at 5587.207 kb on - strand, within Psyr_4715 at 5587.207 kb on - strand, within Psyr_4715 at 5587.207 kb on - strand, within Psyr_4715
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 5,584,978 + Psyr_4713 0.22 +0.3 5,584,978 + Psyr_4713 0.22 -0.6 5,584,979 - Psyr_4713 0.22 -2.2 5,585,026 + Psyr_4713 0.26 -1.2 5,585,026 + Psyr_4713 0.26 +0.7 5,585,026 + Psyr_4713 0.26 +0.1 5,585,026 + Psyr_4713 0.26 -1.5 5,585,027 - Psyr_4713 0.26 -1.4 5,585,027 - Psyr_4713 0.26 +1.3 5,585,027 - Psyr_4713 0.26 -0.4 5,585,027 - Psyr_4713 0.26 -2.4 5,585,056 + Psyr_4713 0.28 -1.1 5,585,056 + Psyr_4713 0.28 +1.3 5,585,057 - Psyr_4713 0.28 +0.8 5,585,057 - Psyr_4713 0.28 -1.5 5,585,057 - Psyr_4713 0.28 -1.3 5,585,548 + Psyr_4713 0.68 +0.8 5,585,548 + Psyr_4713 0.68 -0.7 5,585,549 - Psyr_4713 0.68 -0.1 5,585,549 - Psyr_4713 0.68 -0.5 5,585,976 + -1.8 5,585,976 + +1.0 5,585,976 + +0.7 5,585,976 + +0.0 5,585,976 + -0.4 5,585,976 + -1.6 5,585,976 + +1.3 5,585,977 - +2.3 5,585,977 - +1.1 5,585,977 - -0.3 5,586,094 + Psyr_4714 0.42 +1.3 5,586,094 + Psyr_4714 0.42 +1.0 5,586,094 + Psyr_4714 0.42 +0.9 5,586,094 + Psyr_4714 0.42 -1.8 5,586,094 + Psyr_4714 0.42 +4.1 5,586,095 - Psyr_4714 0.43 -0.4 5,586,095 - Psyr_4714 0.43 -0.7 5,586,095 - Psyr_4714 0.43 +1.0 5,586,095 - Psyr_4714 0.43 -0.9 5,586,095 - Psyr_4714 0.43 +1.0 5,586,095 - Psyr_4714 0.43 +0.5 5,586,095 - Psyr_4714 0.43 +1.3 5,586,095 - Psyr_4714 0.43 -0.2 5,586,095 - Psyr_4714 0.43 -0.1 5,586,095 - Psyr_4714 0.43 +0.3 5,586,143 + Psyr_4714 0.59 +2.5 5,586,143 + Psyr_4714 0.59 +0.4 5,586,167 - Psyr_4714 0.67 +0.8 5,586,167 - Psyr_4714 0.67 -2.2 5,586,196 + Psyr_4714 0.77 +1.8 5,586,196 + Psyr_4714 0.77 +0.8 5,586,197 - Psyr_4714 0.77 +0.3 5,586,260 + -1.1 5,586,260 + +0.3 5,586,260 + -3.2 5,586,260 + +1.3 5,586,260 + +1.0 5,586,260 + -1.4 5,586,260 + -0.1 5,586,261 - +0.7 5,586,261 - +5.2 5,586,261 - -1.8 5,586,323 + -0.7 5,586,324 - -1.4 5,586,399 - +1.8 5,586,420 + -1.2 5,586,420 + -1.7 5,586,421 - +0.2 5,586,421 - +1.3 5,586,538 - -0.4 5,586,642 + Psyr_4715 0.13 -3.3 5,586,642 + Psyr_4715 0.13 +0.1 5,586,643 - Psyr_4715 0.13 +2.6 5,586,645 + Psyr_4715 0.13 -0.8 5,586,646 - Psyr_4715 0.13 +0.4 5,586,660 + Psyr_4715 0.13 -0.7 5,586,661 - Psyr_4715 0.13 -0.6 5,586,684 + Psyr_4715 0.14 -0.5 5,586,685 - Psyr_4715 0.14 +0.8 5,586,693 + Psyr_4715 0.14 -1.7 5,586,693 + Psyr_4715 0.14 +1.0 5,586,694 - Psyr_4715 0.14 +0.9 5,586,694 - Psyr_4715 0.14 -0.2 5,586,694 - Psyr_4715 0.14 +1.6 5,586,694 - Psyr_4715 0.14 +0.8 5,586,750 + Psyr_4715 0.16 -0.7 5,586,751 - Psyr_4715 0.16 -0.5 5,587,016 + Psyr_4715 0.25 +0.8 5,587,016 + Psyr_4715 0.25 -0.1 5,587,017 - Psyr_4715 0.25 -1.0 5,587,118 - Psyr_4715 0.28 -1.9 5,587,155 + Psyr_4715 0.30 -2.7 5,587,155 + Psyr_4715 0.30 -0.7 5,587,156 - Psyr_4715 0.30 +2.2 5,587,206 + Psyr_4715 0.31 +0.3 5,587,207 - Psyr_4715 0.31 +0.0 5,587,207 - Psyr_4715 0.31 +3.2 5,587,207 - Psyr_4715 0.31 +0.0 5,587,207 - Psyr_4715 0.31 +1.7 5,587,207 - Psyr_4715 0.31 -1.7
Or see this region's nucleotide sequence