Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4495 and Psyr_4496 are separated by 230 nucleotides Psyr_4496 and Psyr_4497 are separated by 83 nucleotides Psyr_4497 and Psyr_4498 overlap by 1 nucleotides
Psyr_4495: Psyr_4495 - Beta-lactamase, at 5,358,171 to 5,359,076
_4495
Psyr_4496: Psyr_4496 - outer membrane transport energization protein TonB, at 5,359,307 to 5,360,020
_4496
Psyr_4497: Psyr_4497 - outer membrane transport energization protein ExbB, at 5,360,104 to 5,360,832
_4497
Psyr_4498: Psyr_4498 - outer membrane transport energization protein ExbD, at 5,360,832 to 5,361,257
_4498
Position (kb) 5359
5360
5361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5358.350 kb on - strand, within Psyr_4495 at 5358.350 kb on - strand, within Psyr_4495 at 5358.350 kb on - strand, within Psyr_4495 at 5358.396 kb on + strand, within Psyr_4495 at 5358.397 kb on - strand, within Psyr_4495 at 5358.397 kb on - strand, within Psyr_4495 at 5358.535 kb on + strand, within Psyr_4495 at 5358.535 kb on + strand, within Psyr_4495 at 5358.623 kb on + strand, within Psyr_4495 at 5358.640 kb on + strand, within Psyr_4495 at 5358.662 kb on + strand, within Psyr_4495 at 5358.662 kb on + strand, within Psyr_4495 at 5358.662 kb on + strand, within Psyr_4495 at 5358.662 kb on + strand, within Psyr_4495 at 5358.672 kb on + strand, within Psyr_4495 at 5358.672 kb on + strand, within Psyr_4495 at 5358.672 kb on + strand, within Psyr_4495 at 5358.672 kb on + strand, within Psyr_4495 at 5358.673 kb on - strand, within Psyr_4495 at 5358.673 kb on - strand, within Psyr_4495 at 5358.673 kb on - strand, within Psyr_4495 at 5358.690 kb on + strand, within Psyr_4495 at 5358.886 kb on - strand, within Psyr_4495 at 5358.936 kb on + strand, within Psyr_4495 at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.031 kb on + strand at 5359.032 kb on - strand at 5359.032 kb on - strand at 5359.032 kb on - strand at 5359.032 kb on - strand at 5359.032 kb on - strand at 5359.032 kb on - strand at 5359.032 kb on - strand at 5359.087 kb on + strand at 5359.087 kb on + strand at 5359.087 kb on + strand at 5359.110 kb on - strand at 5359.156 kb on - strand at 5359.156 kb on - strand at 5359.162 kb on + strand at 5359.163 kb on - strand at 5359.180 kb on + strand at 5359.181 kb on - strand at 5359.181 kb on - strand at 5359.181 kb on - strand at 5359.181 kb on - strand at 5359.181 kb on - strand at 5359.181 kb on - strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.200 kb on + strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.201 kb on - strand at 5359.202 kb on + strand at 5359.202 kb on + strand at 5359.202 kb on + strand at 5359.203 kb on - strand at 5359.415 kb on - strand, within Psyr_4496 at 5359.415 kb on - strand, within Psyr_4496 at 5359.415 kb on - strand, within Psyr_4496 at 5359.415 kb on - strand, within Psyr_4496 at 5359.480 kb on + strand, within Psyr_4496 at 5359.480 kb on + strand, within Psyr_4496 at 5359.480 kb on + strand, within Psyr_4496 at 5359.480 kb on + strand, within Psyr_4496 at 5359.480 kb on + strand, within Psyr_4496 at 5359.480 kb on + strand, within Psyr_4496 at 5359.481 kb on - strand, within Psyr_4496 at 5359.481 kb on - strand, within Psyr_4496 at 5359.481 kb on - strand, within Psyr_4496 at 5359.484 kb on + strand, within Psyr_4496 at 5359.484 kb on + strand, within Psyr_4496 at 5359.484 kb on + strand, within Psyr_4496 at 5359.484 kb on + strand, within Psyr_4496 at 5359.485 kb on - strand, within Psyr_4496 at 5359.485 kb on - strand, within Psyr_4496 at 5359.705 kb on - strand, within Psyr_4496 at 5359.763 kb on + strand, within Psyr_4496 at 5359.764 kb on - strand, within Psyr_4496 at 5359.881 kb on + strand, within Psyr_4496 at 5359.881 kb on + strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.982 kb on + strand at 5359.982 kb on + strand at 5359.982 kb on + strand at 5359.983 kb on - strand at 5360.018 kb on + strand at 5360.018 kb on + strand at 5360.019 kb on - strand at 5360.019 kb on - strand at 5360.019 kb on - strand at 5360.019 kb on - strand at 5360.035 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.207 kb on - strand, within Psyr_4497 at 5360.207 kb on - strand, within Psyr_4497 at 5360.325 kb on + strand, within Psyr_4497 at 5360.325 kb on + strand, within Psyr_4497 at 5360.325 kb on + strand, within Psyr_4497 at 5360.325 kb on + strand, within Psyr_4497 at 5360.326 kb on - strand, within Psyr_4497 at 5360.333 kb on - strand, within Psyr_4497 at 5360.471 kb on + strand, within Psyr_4497 at 5360.471 kb on + strand, within Psyr_4497 at 5360.471 kb on + strand, within Psyr_4497 at 5360.472 kb on - strand, within Psyr_4497 at 5360.472 kb on - strand, within Psyr_4497 at 5360.472 kb on - strand, within Psyr_4497 at 5360.551 kb on + strand, within Psyr_4497 at 5360.551 kb on + strand, within Psyr_4497 at 5360.551 kb on + strand, within Psyr_4497 at 5360.551 kb on + strand, within Psyr_4497 at 5360.551 kb on + strand, within Psyr_4497 at 5360.552 kb on - strand, within Psyr_4497 at 5360.552 kb on - strand, within Psyr_4497 at 5360.552 kb on - strand, within Psyr_4497 at 5360.677 kb on + strand, within Psyr_4497 at 5360.678 kb on - strand, within Psyr_4497 at 5360.697 kb on + strand, within Psyr_4497 at 5360.894 kb on + strand, within Psyr_4498
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 5,358,350 - Psyr_4495 0.20 +0.6 5,358,350 - Psyr_4495 0.20 +0.4 5,358,350 - Psyr_4495 0.20 -0.5 5,358,396 + Psyr_4495 0.25 +0.8 5,358,397 - Psyr_4495 0.25 +2.0 5,358,397 - Psyr_4495 0.25 -0.6 5,358,535 + Psyr_4495 0.40 +0.4 5,358,535 + Psyr_4495 0.40 -0.5 5,358,623 + Psyr_4495 0.50 +0.5 5,358,640 + Psyr_4495 0.52 +1.1 5,358,662 + Psyr_4495 0.54 -1.7 5,358,662 + Psyr_4495 0.54 +0.4 5,358,662 + Psyr_4495 0.54 +0.3 5,358,662 + Psyr_4495 0.54 -1.4 5,358,672 + Psyr_4495 0.55 -0.5 5,358,672 + Psyr_4495 0.55 -0.4 5,358,672 + Psyr_4495 0.55 +0.8 5,358,672 + Psyr_4495 0.55 +0.7 5,358,673 - Psyr_4495 0.55 +0.7 5,358,673 - Psyr_4495 0.55 -1.0 5,358,673 - Psyr_4495 0.55 -0.5 5,358,690 + Psyr_4495 0.57 +0.0 5,358,886 - Psyr_4495 0.79 -0.2 5,358,936 + Psyr_4495 0.84 +2.0 5,359,031 + -0.5 5,359,031 + +0.8 5,359,031 + -0.6 5,359,031 + +0.9 5,359,031 + -0.2 5,359,031 + -1.0 5,359,031 + -0.9 5,359,031 + +0.1 5,359,031 + +0.1 5,359,031 + +0.1 5,359,031 + +0.6 5,359,032 - -1.3 5,359,032 - +0.4 5,359,032 - -0.3 5,359,032 - +3.3 5,359,032 - +0.3 5,359,032 - +0.3 5,359,032 - +1.1 5,359,087 + +1.1 5,359,087 + -1.6 5,359,087 + -0.8 5,359,110 - -0.1 5,359,156 - -1.0 5,359,156 - -0.9 5,359,162 + +1.7 5,359,163 - -1.0 5,359,180 + +1.1 5,359,181 - +0.9 5,359,181 - -0.3 5,359,181 - +0.6 5,359,181 - +0.5 5,359,181 - +1.1 5,359,181 - -0.5 5,359,200 + -0.0 5,359,200 + +0.4 5,359,200 + -0.3 5,359,200 + +0.5 5,359,200 + +0.5 5,359,200 + +1.2 5,359,200 + -2.2 5,359,200 + +0.7 5,359,200 + +1.9 5,359,200 + -1.0 5,359,200 + -0.3 5,359,200 + +0.5 5,359,200 + -0.6 5,359,200 + -0.2 5,359,200 + -1.3 5,359,200 + +1.0 5,359,201 - +0.5 5,359,201 - -0.2 5,359,201 - +0.7 5,359,201 - +0.4 5,359,201 - +0.1 5,359,201 - +1.5 5,359,201 - -0.5 5,359,201 - -0.2 5,359,201 - +1.9 5,359,201 - -0.6 5,359,201 - +1.2 5,359,201 - -3.6 5,359,202 + +0.5 5,359,202 + -0.7 5,359,202 + +0.6 5,359,203 - -1.7 5,359,415 - Psyr_4496 0.15 +0.2 5,359,415 - Psyr_4496 0.15 -0.4 5,359,415 - Psyr_4496 0.15 +0.1 5,359,415 - Psyr_4496 0.15 -1.3 5,359,480 + Psyr_4496 0.24 +1.0 5,359,480 + Psyr_4496 0.24 +0.2 5,359,480 + Psyr_4496 0.24 +0.3 5,359,480 + Psyr_4496 0.24 -0.0 5,359,480 + Psyr_4496 0.24 +2.9 5,359,480 + Psyr_4496 0.24 -0.2 5,359,481 - Psyr_4496 0.24 +0.6 5,359,481 - Psyr_4496 0.24 +0.3 5,359,481 - Psyr_4496 0.24 -1.6 5,359,484 + Psyr_4496 0.25 +1.3 5,359,484 + Psyr_4496 0.25 +2.3 5,359,484 + Psyr_4496 0.25 -0.0 5,359,484 + Psyr_4496 0.25 +0.5 5,359,485 - Psyr_4496 0.25 -1.4 5,359,485 - Psyr_4496 0.25 -0.6 5,359,705 - Psyr_4496 0.56 +0.3 5,359,763 + Psyr_4496 0.64 +0.3 5,359,764 - Psyr_4496 0.64 -0.9 5,359,881 + Psyr_4496 0.80 +0.3 5,359,881 + Psyr_4496 0.80 -1.5 5,359,882 - Psyr_4496 0.81 +0.6 5,359,882 - Psyr_4496 0.81 -1.3 5,359,882 - Psyr_4496 0.81 -0.5 5,359,882 - Psyr_4496 0.81 +0.4 5,359,982 + -0.8 5,359,982 + +1.5 5,359,982 + +1.3 5,359,983 - -1.5 5,360,018 + +0.6 5,360,018 + -1.5 5,360,019 - -1.0 5,360,019 - +2.1 5,360,019 - -2.0 5,360,019 - +2.0 5,360,035 + -0.3 5,360,099 + -0.3 5,360,099 + -2.6 5,360,099 + +0.5 5,360,099 + +0.3 5,360,099 + +0.7 5,360,099 + +0.8 5,360,099 + +0.6 5,360,099 + +2.6 5,360,099 + -0.3 5,360,099 + -0.7 5,360,099 + -2.9 5,360,099 + -1.2 5,360,100 - -0.6 5,360,100 - +0.9 5,360,100 - +0.7 5,360,100 - -0.0 5,360,100 - +0.1 5,360,100 - +1.5 5,360,100 - -0.1 5,360,103 + +1.5 5,360,103 + +3.3 5,360,103 + -1.6 5,360,103 + -1.3 5,360,103 + -0.6 5,360,103 + +1.0 5,360,103 + +0.2 5,360,103 + -0.3 5,360,103 + -1.5 5,360,103 + +1.0 5,360,103 + -1.8 5,360,103 + -2.2 5,360,104 - -0.9 5,360,104 - -0.6 5,360,104 - +1.0 5,360,104 - -0.9 5,360,104 - -0.0 5,360,104 - -0.2 5,360,104 - -0.3 5,360,104 - -0.5 5,360,104 - +1.6 5,360,104 - -0.5 5,360,104 - -1.0 5,360,207 - Psyr_4497 0.14 +0.4 5,360,207 - Psyr_4497 0.14 +1.5 5,360,325 + Psyr_4497 0.30 +0.7 5,360,325 + Psyr_4497 0.30 -1.5 5,360,325 + Psyr_4497 0.30 -1.5 5,360,325 + Psyr_4497 0.30 +0.2 5,360,326 - Psyr_4497 0.30 +0.5 5,360,333 - Psyr_4497 0.31 -1.3 5,360,471 + Psyr_4497 0.50 +1.5 5,360,471 + Psyr_4497 0.50 +0.6 5,360,471 + Psyr_4497 0.50 -1.5 5,360,472 - Psyr_4497 0.50 +1.3 5,360,472 - Psyr_4497 0.50 +1.3 5,360,472 - Psyr_4497 0.50 -1.1 5,360,551 + Psyr_4497 0.61 -0.7 5,360,551 + Psyr_4497 0.61 +0.2 5,360,551 + Psyr_4497 0.61 -0.5 5,360,551 + Psyr_4497 0.61 +1.0 5,360,551 + Psyr_4497 0.61 +0.2 5,360,552 - Psyr_4497 0.61 +1.3 5,360,552 - Psyr_4497 0.61 +0.3 5,360,552 - Psyr_4497 0.61 +1.6 5,360,677 + Psyr_4497 0.79 +1.3 5,360,678 - Psyr_4497 0.79 -0.0 5,360,697 + Psyr_4497 0.81 -1.8 5,360,894 + Psyr_4498 0.15 -1.9
Or see this region's nucleotide sequence