Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4475

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4474 and Psyr_4475 overlap by 4 nucleotidesPsyr_4475 and Psyr_4476 overlap by 8 nucleotides Psyr_4474: Psyr_4474 - hypothetical protein, at 5,333,982 to 5,335,508 _4474 Psyr_4475: Psyr_4475 - NAD-dependent epimerase/dehydratase, at 5,335,505 to 5,336,434 _4475 Psyr_4476: Psyr_4476 - dTDP-4-dehydrorhamnose reductase, at 5,336,427 to 5,337,311 _4476 Position (kb) 5335 5336 5337Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5335.499 kb on + strandat 5335.499 kb on + strandat 5335.499 kb on + strandat 5336.681 kb on - strand, within Psyr_4476at 5336.681 kb on - strand, within Psyr_4476at 5336.681 kb on - strand, within Psyr_4476at 5336.878 kb on - strand, within Psyr_4476at 5336.878 kb on - strand, within Psyr_4476at 5337.128 kb on - strand, within Psyr_4476at 5337.128 kb on - strand, within Psyr_4476at 5337.128 kb on - strand, within Psyr_4476at 5337.131 kb on - strand, within Psyr_4476at 5337.131 kb on - strand, within Psyr_4476at 5337.131 kb on - strand, within Psyr_4476at 5337.131 kb on - strand, within Psyr_4476at 5337.131 kb on - strand, within Psyr_4476at 5337.131 kb on - strand, within Psyr_4476at 5337.131 kb on - strand, within Psyr_4476at 5337.131 kb on - strand, within Psyr_4476

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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5,335,499 + -0.5
5,335,499 + +1.3
5,335,499 + -0.3
5,336,681 - Psyr_4476 0.29 +3.5
5,336,681 - Psyr_4476 0.29 +1.3
5,336,681 - Psyr_4476 0.29 +0.6
5,336,878 - Psyr_4476 0.51 +0.1
5,336,878 - Psyr_4476 0.51 +0.3
5,337,128 - Psyr_4476 0.79 +0.5
5,337,128 - Psyr_4476 0.79 +0.8
5,337,128 - Psyr_4476 0.79 +0.2
5,337,131 - Psyr_4476 0.80 -1.0
5,337,131 - Psyr_4476 0.80 +0.3
5,337,131 - Psyr_4476 0.80 +1.8
5,337,131 - Psyr_4476 0.80 +0.4
5,337,131 - Psyr_4476 0.80 +0.8
5,337,131 - Psyr_4476 0.80 +1.4
5,337,131 - Psyr_4476 0.80 +0.7
5,337,131 - Psyr_4476 0.80 -2.6

Or see this region's nucleotide sequence