Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4332 and Psyr_4333 are separated by 25 nucleotides Psyr_4333 and Psyr_4334 are separated by 6 nucleotides Psyr_4334 and Psyr_4335 are separated by 381 nucleotides Psyr_4335 and Psyr_4336 are separated by 13 nucleotides
Psyr_4332: Psyr_4332 - conserved hypothetical protein, at 5,184,193 to 5,184,612
_4332
Psyr_4333: Psyr_4333 - Cation efflux protein, at 5,184,638 to 5,185,531
_4333
Psyr_4334: Psyr_4334 - conserved hypothetical protein, at 5,185,538 to 5,186,704
_4334
Psyr_4335: Psyr_4335 - transcriptional regulator, AsnC family, at 5,187,086 to 5,187,577
_4335
Psyr_4336: Psyr_4336 - ribosomal large subunit pseudouridine synthase E, at 5,187,591 to 5,188,223
_4336
Position (kb) 5185
5186
5187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5184.561 kb on + strand, within Psyr_4332 at 5184.561 kb on + strand, within Psyr_4332 at 5184.562 kb on - strand, within Psyr_4332 at 5184.828 kb on - strand, within Psyr_4333 at 5184.828 kb on - strand, within Psyr_4333 at 5184.860 kb on + strand, within Psyr_4333 at 5185.158 kb on - strand, within Psyr_4333 at 5185.158 kb on - strand, within Psyr_4333 at 5185.185 kb on - strand, within Psyr_4333 at 5185.185 kb on - strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.209 kb on - strand, within Psyr_4333 at 5185.209 kb on - strand, within Psyr_4333 at 5185.209 kb on - strand, within Psyr_4333 at 5185.210 kb on + strand, within Psyr_4333 at 5185.210 kb on + strand, within Psyr_4333 at 5185.210 kb on + strand, within Psyr_4333 at 5185.349 kb on - strand, within Psyr_4333 at 5185.551 kb on + strand at 5185.591 kb on - strand at 5185.677 kb on + strand, within Psyr_4334 at 5185.677 kb on + strand, within Psyr_4334 at 5185.677 kb on + strand, within Psyr_4334 at 5185.678 kb on - strand, within Psyr_4334 at 5185.678 kb on - strand, within Psyr_4334 at 5185.678 kb on - strand, within Psyr_4334 at 5185.681 kb on + strand, within Psyr_4334 at 5185.681 kb on + strand, within Psyr_4334 at 5185.682 kb on - strand, within Psyr_4334 at 5185.773 kb on + strand, within Psyr_4334 at 5185.774 kb on - strand, within Psyr_4334 at 5185.809 kb on + strand, within Psyr_4334 at 5185.809 kb on + strand, within Psyr_4334 at 5185.810 kb on - strand, within Psyr_4334 at 5185.810 kb on - strand, within Psyr_4334 at 5185.837 kb on - strand, within Psyr_4334 at 5185.837 kb on - strand, within Psyr_4334 at 5185.837 kb on - strand, within Psyr_4334 at 5185.839 kb on + strand, within Psyr_4334 at 5185.839 kb on + strand, within Psyr_4334 at 5185.839 kb on + strand, within Psyr_4334 at 5185.839 kb on + strand, within Psyr_4334 at 5185.839 kb on + strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.880 kb on + strand, within Psyr_4334 at 5185.880 kb on + strand, within Psyr_4334 at 5185.880 kb on + strand, within Psyr_4334 at 5185.880 kb on + strand, within Psyr_4334 at 5185.880 kb on + strand, within Psyr_4334 at 5185.881 kb on - strand, within Psyr_4334 at 5185.881 kb on - strand, within Psyr_4334 at 5185.881 kb on - strand, within Psyr_4334 at 5185.881 kb on - strand, within Psyr_4334 at 5185.881 kb on - strand, within Psyr_4334 at 5185.881 kb on - strand, within Psyr_4334 at 5185.881 kb on - strand, within Psyr_4334 at 5185.902 kb on - strand, within Psyr_4334 at 5185.944 kb on + strand, within Psyr_4334 at 5185.945 kb on - strand, within Psyr_4334 at 5185.983 kb on + strand, within Psyr_4334 at 5185.983 kb on + strand, within Psyr_4334 at 5185.986 kb on + strand, within Psyr_4334 at 5185.986 kb on + strand, within Psyr_4334 at 5185.986 kb on + strand, within Psyr_4334 at 5185.986 kb on + strand, within Psyr_4334 at 5185.986 kb on + strand, within Psyr_4334 at 5185.986 kb on + strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.989 kb on + strand, within Psyr_4334 at 5185.989 kb on + strand, within Psyr_4334 at 5185.989 kb on + strand, within Psyr_4334 at 5185.989 kb on + strand, within Psyr_4334 at 5185.989 kb on + strand, within Psyr_4334 at 5185.989 kb on + strand, within Psyr_4334 at 5185.990 kb on - strand, within Psyr_4334 at 5185.990 kb on - strand, within Psyr_4334 at 5185.990 kb on - strand, within Psyr_4334 at 5185.990 kb on - strand, within Psyr_4334 at 5185.990 kb on - strand, within Psyr_4334 at 5186.011 kb on + strand, within Psyr_4334 at 5186.012 kb on - strand, within Psyr_4334 at 5186.019 kb on + strand, within Psyr_4334 at 5186.039 kb on + strand, within Psyr_4334 at 5186.039 kb on + strand, within Psyr_4334 at 5186.040 kb on - strand, within Psyr_4334 at 5186.040 kb on - strand, within Psyr_4334 at 5186.176 kb on - strand, within Psyr_4334 at 5186.176 kb on - strand, within Psyr_4334 at 5186.176 kb on - strand, within Psyr_4334 at 5186.672 kb on + strand at 5186.672 kb on + strand at 5186.672 kb on + strand at 5186.672 kb on + strand at 5186.672 kb on + strand at 5186.672 kb on + strand at 5186.672 kb on + strand at 5186.672 kb on + strand at 5186.672 kb on + strand at 5186.673 kb on - strand at 5186.673 kb on - strand at 5186.673 kb on - strand at 5186.673 kb on - strand at 5186.673 kb on - strand at 5186.673 kb on - strand at 5186.673 kb on - strand at 5186.673 kb on - strand at 5186.673 kb on - strand at 5186.673 kb on - strand at 5186.716 kb on + strand at 5186.717 kb on - strand at 5186.717 kb on - strand at 5186.738 kb on - strand at 5186.738 kb on - strand at 5186.738 kb on - strand at 5186.738 kb on - strand at 5186.738 kb on - strand at 5186.747 kb on + strand at 5186.816 kb on + strand at 5186.816 kb on + strand at 5186.816 kb on + strand at 5186.816 kb on + strand at 5186.816 kb on + strand at 5186.817 kb on - strand at 5186.817 kb on - strand at 5186.817 kb on - strand at 5186.817 kb on - strand at 5186.817 kb on - strand at 5186.817 kb on - strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.879 kb on + strand at 5186.879 kb on + strand at 5186.880 kb on - strand at 5186.880 kb on - strand at 5186.880 kb on - strand at 5186.880 kb on - strand at 5186.976 kb on + strand at 5186.977 kb on - strand at 5187.034 kb on - strand at 5187.160 kb on - strand, within Psyr_4335 at 5187.243 kb on - strand, within Psyr_4335 at 5187.302 kb on + strand, within Psyr_4335 at 5187.303 kb on - strand, within Psyr_4335 at 5187.420 kb on - strand, within Psyr_4335
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 5,184,561 + Psyr_4332 0.88 -0.8 5,184,561 + Psyr_4332 0.88 -0.4 5,184,562 - Psyr_4332 0.88 -0.1 5,184,828 - Psyr_4333 0.21 -0.2 5,184,828 - Psyr_4333 0.21 -0.9 5,184,860 + Psyr_4333 0.25 +1.3 5,185,158 - Psyr_4333 0.58 +1.3 5,185,158 - Psyr_4333 0.58 -0.3 5,185,185 - Psyr_4333 0.61 +0.5 5,185,185 - Psyr_4333 0.61 +0.4 5,185,208 + Psyr_4333 0.64 -0.9 5,185,208 + Psyr_4333 0.64 +1.0 5,185,208 + Psyr_4333 0.64 -0.8 5,185,208 + Psyr_4333 0.64 +0.8 5,185,209 - Psyr_4333 0.64 -0.5 5,185,209 - Psyr_4333 0.64 +0.6 5,185,209 - Psyr_4333 0.64 +0.5 5,185,210 + Psyr_4333 0.64 -1.2 5,185,210 + Psyr_4333 0.64 +0.5 5,185,210 + Psyr_4333 0.64 -0.1 5,185,349 - Psyr_4333 0.80 +1.0 5,185,551 + +1.7 5,185,591 - -0.8 5,185,677 + Psyr_4334 0.12 +0.2 5,185,677 + Psyr_4334 0.12 -2.8 5,185,677 + Psyr_4334 0.12 +1.5 5,185,678 - Psyr_4334 0.12 -0.5 5,185,678 - Psyr_4334 0.12 -2.0 5,185,678 - Psyr_4334 0.12 +0.5 5,185,681 + Psyr_4334 0.12 +0.1 5,185,681 + Psyr_4334 0.12 -2.3 5,185,682 - Psyr_4334 0.12 +0.7 5,185,773 + Psyr_4334 0.20 +0.9 5,185,774 - Psyr_4334 0.20 +0.8 5,185,809 + Psyr_4334 0.23 +0.0 5,185,809 + Psyr_4334 0.23 +0.4 5,185,810 - Psyr_4334 0.23 +1.6 5,185,810 - Psyr_4334 0.23 +0.9 5,185,837 - Psyr_4334 0.26 +0.2 5,185,837 - Psyr_4334 0.26 +0.5 5,185,837 - Psyr_4334 0.26 -1.0 5,185,839 + Psyr_4334 0.26 +3.4 5,185,839 + Psyr_4334 0.26 -0.2 5,185,839 + Psyr_4334 0.26 -0.7 5,185,839 + Psyr_4334 0.26 +1.3 5,185,839 + Psyr_4334 0.26 +0.9 5,185,840 - Psyr_4334 0.26 -0.7 5,185,840 - Psyr_4334 0.26 -1.2 5,185,840 - Psyr_4334 0.26 -0.2 5,185,840 - Psyr_4334 0.26 -0.7 5,185,840 - Psyr_4334 0.26 +1.3 5,185,840 - Psyr_4334 0.26 +0.6 5,185,840 - Psyr_4334 0.26 -1.0 5,185,840 - Psyr_4334 0.26 -0.3 5,185,840 - Psyr_4334 0.26 -0.9 5,185,880 + Psyr_4334 0.29 +1.0 5,185,880 + Psyr_4334 0.29 +0.1 5,185,880 + Psyr_4334 0.29 +0.3 5,185,880 + Psyr_4334 0.29 +0.3 5,185,880 + Psyr_4334 0.29 -1.5 5,185,881 - Psyr_4334 0.29 -1.7 5,185,881 - Psyr_4334 0.29 +0.5 5,185,881 - Psyr_4334 0.29 -2.2 5,185,881 - Psyr_4334 0.29 -1.0 5,185,881 - Psyr_4334 0.29 +0.7 5,185,881 - Psyr_4334 0.29 +0.2 5,185,881 - Psyr_4334 0.29 +0.8 5,185,902 - Psyr_4334 0.31 -0.4 5,185,944 + Psyr_4334 0.35 +0.2 5,185,945 - Psyr_4334 0.35 +2.3 5,185,983 + Psyr_4334 0.38 +1.6 5,185,983 + Psyr_4334 0.38 +0.6 5,185,986 + Psyr_4334 0.38 -0.7 5,185,986 + Psyr_4334 0.38 +0.4 5,185,986 + Psyr_4334 0.38 -1.0 5,185,986 + Psyr_4334 0.38 +0.3 5,185,986 + Psyr_4334 0.38 +0.6 5,185,986 + Psyr_4334 0.38 -0.4 5,185,987 - Psyr_4334 0.38 +0.7 5,185,987 - Psyr_4334 0.38 +1.3 5,185,987 - Psyr_4334 0.38 -0.6 5,185,987 - Psyr_4334 0.38 +1.1 5,185,987 - Psyr_4334 0.38 +1.3 5,185,987 - Psyr_4334 0.38 -1.1 5,185,987 - Psyr_4334 0.38 -2.3 5,185,987 - Psyr_4334 0.38 +1.3 5,185,989 + Psyr_4334 0.39 +2.6 5,185,989 + Psyr_4334 0.39 -0.8 5,185,989 + Psyr_4334 0.39 -1.0 5,185,989 + Psyr_4334 0.39 +0.6 5,185,989 + Psyr_4334 0.39 -0.8 5,185,989 + Psyr_4334 0.39 +1.3 5,185,990 - Psyr_4334 0.39 -2.2 5,185,990 - Psyr_4334 0.39 -0.7 5,185,990 - Psyr_4334 0.39 +0.3 5,185,990 - Psyr_4334 0.39 -1.1 5,185,990 - Psyr_4334 0.39 -1.7 5,186,011 + Psyr_4334 0.41 -1.3 5,186,012 - Psyr_4334 0.41 +0.6 5,186,019 + Psyr_4334 0.41 +0.8 5,186,039 + Psyr_4334 0.43 -0.7 5,186,039 + Psyr_4334 0.43 -0.3 5,186,040 - Psyr_4334 0.43 +1.2 5,186,040 - Psyr_4334 0.43 +1.1 5,186,176 - Psyr_4334 0.55 +0.5 5,186,176 - Psyr_4334 0.55 +1.4 5,186,176 - Psyr_4334 0.55 -0.7 5,186,672 + -2.9 5,186,672 + -1.3 5,186,672 + +0.3 5,186,672 + +1.1 5,186,672 + -0.2 5,186,672 + +1.1 5,186,672 + +0.4 5,186,672 + +0.0 5,186,672 + +0.2 5,186,673 - +3.3 5,186,673 - +1.0 5,186,673 - +0.1 5,186,673 - -0.7 5,186,673 - -0.7 5,186,673 - +0.7 5,186,673 - -0.6 5,186,673 - +0.3 5,186,673 - +1.3 5,186,673 - -1.6 5,186,716 + -0.1 5,186,717 - -1.3 5,186,717 - -0.7 5,186,738 - -1.7 5,186,738 - +0.3 5,186,738 - -1.6 5,186,738 - +0.9 5,186,738 - +0.7 5,186,747 + +0.0 5,186,816 + -2.1 5,186,816 + -0.7 5,186,816 + +1.5 5,186,816 + -1.7 5,186,816 + -0.5 5,186,817 - -0.6 5,186,817 - +0.5 5,186,817 - -1.0 5,186,817 - -0.7 5,186,817 - +0.3 5,186,817 - +0.4 5,186,875 + -0.6 5,186,875 + +2.1 5,186,875 + -0.2 5,186,875 + -1.1 5,186,875 + +0.6 5,186,875 + +0.3 5,186,875 + +0.8 5,186,875 + +0.4 5,186,875 + -0.1 5,186,875 + +0.6 5,186,875 + +0.0 5,186,875 + -2.1 5,186,875 + +2.3 5,186,875 + +0.7 5,186,875 + +0.8 5,186,875 + -0.7 5,186,875 + +0.7 5,186,875 + -0.2 5,186,876 - +0.3 5,186,876 - -0.7 5,186,876 - +0.7 5,186,876 - +0.7 5,186,876 - +0.8 5,186,879 + +1.7 5,186,879 + -1.7 5,186,880 - +0.4 5,186,880 - +0.3 5,186,880 - -1.1 5,186,880 - +0.3 5,186,976 + +0.4 5,186,977 - -0.3 5,187,034 - -1.2 5,187,160 - Psyr_4335 0.15 -2.3 5,187,243 - Psyr_4335 0.32 +0.1 5,187,302 + Psyr_4335 0.44 +1.6 5,187,303 - Psyr_4335 0.44 -3.1 5,187,420 - Psyr_4335 0.68 -1.8
Or see this region's nucleotide sequence