Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4331 and Psyr_4332 are separated by 274 nucleotides Psyr_4332 and Psyr_4333 are separated by 25 nucleotides Psyr_4333 and Psyr_4334 are separated by 6 nucleotides
Psyr_4331: Psyr_4331 - galactose 1-dehydrogenase, at 5,182,992 to 5,183,918
_4331
Psyr_4332: Psyr_4332 - conserved hypothetical protein, at 5,184,193 to 5,184,612
_4332
Psyr_4333: Psyr_4333 - Cation efflux protein, at 5,184,638 to 5,185,531
_4333
Psyr_4334: Psyr_4334 - conserved hypothetical protein, at 5,185,538 to 5,186,704
_4334
Position (kb) 5184
5185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5183.720 kb on + strand, within Psyr_4331 at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.939 kb on + strand at 5183.939 kb on + strand at 5183.939 kb on + strand at 5183.939 kb on + strand at 5183.939 kb on + strand at 5183.959 kb on - strand at 5183.983 kb on + strand at 5184.098 kb on + strand at 5184.099 kb on - strand at 5184.133 kb on + strand at 5184.134 kb on - strand at 5184.140 kb on - strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.274 kb on + strand, within Psyr_4332 at 5184.274 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.355 kb on - strand, within Psyr_4332 at 5184.406 kb on + strand, within Psyr_4332 at 5184.406 kb on + strand, within Psyr_4332 at 5184.406 kb on + strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.561 kb on + strand, within Psyr_4332 at 5184.561 kb on + strand, within Psyr_4332 at 5184.562 kb on - strand, within Psyr_4332 at 5184.828 kb on - strand, within Psyr_4333 at 5184.828 kb on - strand, within Psyr_4333 at 5184.860 kb on + strand, within Psyr_4333 at 5185.158 kb on - strand, within Psyr_4333 at 5185.158 kb on - strand, within Psyr_4333 at 5185.185 kb on - strand, within Psyr_4333 at 5185.185 kb on - strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.209 kb on - strand, within Psyr_4333 at 5185.209 kb on - strand, within Psyr_4333 at 5185.209 kb on - strand, within Psyr_4333 at 5185.210 kb on + strand, within Psyr_4333 at 5185.210 kb on + strand, within Psyr_4333 at 5185.210 kb on + strand, within Psyr_4333 at 5185.349 kb on - strand, within Psyr_4333 at 5185.551 kb on + strand at 5185.591 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 5,183,720 + Psyr_4331 0.79 -0.3 5,183,918 + -0.4 5,183,918 + +0.7 5,183,918 + -2.7 5,183,918 + +2.6 5,183,918 + -2.0 5,183,918 + -1.8 5,183,918 + -1.4 5,183,918 + +0.7 5,183,918 + +1.0 5,183,918 + +1.7 5,183,918 + +0.9 5,183,918 + +0.3 5,183,918 + -1.1 5,183,918 + -1.3 5,183,918 + +0.5 5,183,918 + +0.3 5,183,918 + +1.0 5,183,918 + -0.3 5,183,918 + -2.3 5,183,918 + +2.6 5,183,918 + -2.7 5,183,919 - -2.8 5,183,919 - -0.8 5,183,919 - -1.9 5,183,919 - -2.0 5,183,919 - -0.3 5,183,919 - +1.3 5,183,919 - -0.3 5,183,919 - -0.9 5,183,919 - +0.4 5,183,919 - -0.8 5,183,919 - +0.3 5,183,919 - +1.6 5,183,919 - +1.4 5,183,919 - -1.3 5,183,919 - -0.3 5,183,919 - -0.6 5,183,919 - +0.3 5,183,919 - -1.9 5,183,919 - -0.8 5,183,919 - +0.7 5,183,919 - -0.5 5,183,919 - +2.3 5,183,919 - -0.7 5,183,939 + +1.0 5,183,939 + +0.6 5,183,939 + -0.6 5,183,939 + +0.5 5,183,939 + +2.0 5,183,959 - +0.1 5,183,983 + +0.5 5,184,098 + +1.7 5,184,099 - -0.4 5,184,133 + +0.0 5,184,134 - +1.1 5,184,140 - +0.4 5,184,161 + -2.6 5,184,161 + +0.1 5,184,161 + -1.4 5,184,161 + -0.1 5,184,161 + -1.7 5,184,161 + +2.3 5,184,161 + +1.4 5,184,161 + +0.5 5,184,162 - -0.8 5,184,162 - +0.5 5,184,162 - -0.6 5,184,162 - +0.4 5,184,162 - +0.1 5,184,162 - +0.9 5,184,162 - -0.4 5,184,162 - -1.1 5,184,162 - -1.3 5,184,162 - -2.0 5,184,162 - +1.3 5,184,162 - +3.6 5,184,162 - -2.6 5,184,162 - -1.1 5,184,162 - +2.3 5,184,162 - +0.6 5,184,162 - -2.3 5,184,162 - -1.7 5,184,162 - +0.1 5,184,162 - +0.7 5,184,163 + +1.0 5,184,163 + +0.6 5,184,163 + -0.6 5,184,163 + +2.4 5,184,163 + +0.5 5,184,163 + -1.4 5,184,163 + -1.1 5,184,163 + -1.3 5,184,163 + +0.0 5,184,163 + +0.9 5,184,163 + -0.4 5,184,163 + +0.4 5,184,163 + +2.4 5,184,163 + +0.0 5,184,163 + +0.2 5,184,164 - +1.3 5,184,164 - +0.1 5,184,164 - +0.1 5,184,164 - -3.3 5,184,164 - -0.0 5,184,164 - -0.7 5,184,164 - +0.1 5,184,164 - -0.3 5,184,164 - +3.0 5,184,164 - -0.3 5,184,164 - -1.8 5,184,164 - +0.8 5,184,274 + Psyr_4332 0.19 +0.0 5,184,274 + Psyr_4332 0.19 -1.9 5,184,352 + Psyr_4332 0.38 -0.7 5,184,352 + Psyr_4332 0.38 +0.9 5,184,352 + Psyr_4332 0.38 -1.8 5,184,352 + Psyr_4332 0.38 +0.7 5,184,352 + Psyr_4332 0.38 +0.0 5,184,352 + Psyr_4332 0.38 -1.3 5,184,352 + Psyr_4332 0.38 +0.3 5,184,352 + Psyr_4332 0.38 +0.0 5,184,352 + Psyr_4332 0.38 -1.3 5,184,352 + Psyr_4332 0.38 +0.2 5,184,352 + Psyr_4332 0.38 +0.3 5,184,352 + Psyr_4332 0.38 +0.8 5,184,352 + Psyr_4332 0.38 +0.6 5,184,352 + Psyr_4332 0.38 +0.8 5,184,352 + Psyr_4332 0.38 -0.2 5,184,353 - Psyr_4332 0.38 -0.8 5,184,353 - Psyr_4332 0.38 -1.0 5,184,353 - Psyr_4332 0.38 +0.9 5,184,353 - Psyr_4332 0.38 +0.8 5,184,353 - Psyr_4332 0.38 +0.9 5,184,353 - Psyr_4332 0.38 +0.8 5,184,353 - Psyr_4332 0.38 -0.6 5,184,353 - Psyr_4332 0.38 +0.4 5,184,353 - Psyr_4332 0.38 +0.2 5,184,353 - Psyr_4332 0.38 +0.2 5,184,353 - Psyr_4332 0.38 +1.1 5,184,353 - Psyr_4332 0.38 +1.8 5,184,353 - Psyr_4332 0.38 +0.3 5,184,355 - Psyr_4332 0.39 -1.6 5,184,406 + Psyr_4332 0.51 -0.7 5,184,406 + Psyr_4332 0.51 -0.7 5,184,406 + Psyr_4332 0.51 +1.4 5,184,407 - Psyr_4332 0.51 +3.6 5,184,407 - Psyr_4332 0.51 -0.6 5,184,407 - Psyr_4332 0.51 -0.7 5,184,561 + Psyr_4332 0.88 -0.8 5,184,561 + Psyr_4332 0.88 -0.4 5,184,562 - Psyr_4332 0.88 -0.1 5,184,828 - Psyr_4333 0.21 -0.2 5,184,828 - Psyr_4333 0.21 -0.9 5,184,860 + Psyr_4333 0.25 +1.3 5,185,158 - Psyr_4333 0.58 +1.3 5,185,158 - Psyr_4333 0.58 -0.3 5,185,185 - Psyr_4333 0.61 +0.5 5,185,185 - Psyr_4333 0.61 +0.4 5,185,208 + Psyr_4333 0.64 -0.9 5,185,208 + Psyr_4333 0.64 +1.0 5,185,208 + Psyr_4333 0.64 -0.8 5,185,208 + Psyr_4333 0.64 +0.8 5,185,209 - Psyr_4333 0.64 -0.5 5,185,209 - Psyr_4333 0.64 +0.6 5,185,209 - Psyr_4333 0.64 +0.5 5,185,210 + Psyr_4333 0.64 -1.2 5,185,210 + Psyr_4333 0.64 +0.5 5,185,210 + Psyr_4333 0.64 -0.1 5,185,349 - Psyr_4333 0.80 +1.0 5,185,551 + +1.7 5,185,591 - -0.8
Or see this region's nucleotide sequence