Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4301

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4299 and Psyr_4300 are separated by 4 nucleotidesPsyr_4300 and Psyr_4301 are separated by 18 nucleotidesPsyr_4301 and Psyr_4302 are separated by 280 nucleotides Psyr_4299: Psyr_4299 - transcriptional regulator, AsnC family, at 5,126,309 to 5,126,776 _4299 Psyr_4300: Psyr_4300 - DNA polymerase III, epsilon subunit, at 5,126,781 to 5,127,395 _4300 Psyr_4301: Psyr_4301 - Protein of unknown function DUF88, at 5,127,414 to 5,127,890 _4301 Psyr_4302: Psyr_4302 - conserved hypothetical protein, at 5,128,171 to 5,128,875 _4302 Position (kb) 5127 5128Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5126.436 kb on + strand, within Psyr_4299at 5126.437 kb on - strand, within Psyr_4299at 5126.437 kb on - strand, within Psyr_4299at 5126.463 kb on - strand, within Psyr_4299at 5126.553 kb on - strand, within Psyr_4299at 5126.553 kb on - strand, within Psyr_4299at 5126.553 kb on - strand, within Psyr_4299at 5126.553 kb on - strand, within Psyr_4299at 5126.617 kb on - strand, within Psyr_4299at 5126.744 kb on + strandat 5126.744 kb on + strandat 5126.744 kb on + strandat 5126.744 kb on + strandat 5126.745 kb on - strandat 5127.094 kb on + strand, within Psyr_4300at 5127.094 kb on + strand, within Psyr_4300at 5127.095 kb on - strand, within Psyr_4300at 5127.248 kb on + strand, within Psyr_4300at 5127.248 kb on + strand, within Psyr_4300at 5127.339 kb on - strandat 5127.383 kb on + strandat 5127.384 kb on - strandat 5127.384 kb on - strandat 5127.384 kb on - strandat 5127.384 kb on - strandat 5127.384 kb on - strandat 5127.384 kb on - strandat 5127.411 kb on - strandat 5127.411 kb on - strandat 5127.500 kb on - strand, within Psyr_4301at 5127.669 kb on - strand, within Psyr_4301at 5127.670 kb on + strand, within Psyr_4301at 5127.671 kb on - strand, within Psyr_4301at 5127.671 kb on - strand, within Psyr_4301at 5127.671 kb on - strand, within Psyr_4301at 5127.671 kb on - strand, within Psyr_4301at 5127.671 kb on - strand, within Psyr_4301at 5127.671 kb on - strand, within Psyr_4301at 5127.671 kb on - strand, within Psyr_4301at 5127.671 kb on - strand, within Psyr_4301at 5127.671 kb on - strand, within Psyr_4301at 5127.671 kb on - strand, within Psyr_4301at 5127.709 kb on - strand, within Psyr_4301at 5127.811 kb on + strand, within Psyr_4301at 5127.847 kb on + strandat 5127.847 kb on + strandat 5127.847 kb on + strandat 5127.847 kb on + strandat 5127.847 kb on + strandat 5127.847 kb on + strandat 5127.847 kb on + strandat 5127.848 kb on - strandat 5127.848 kb on - strandat 5127.848 kb on - strandat 5127.848 kb on - strandat 5127.848 kb on - strandat 5127.850 kb on + strandat 5127.850 kb on + strandat 5127.850 kb on + strandat 5127.850 kb on + strandat 5127.851 kb on - strandat 5127.851 kb on - strandat 5127.958 kb on + strandat 5127.958 kb on + strandat 5128.235 kb on + strandat 5128.235 kb on + strandat 5128.236 kb on - strandat 5128.236 kb on - strandat 5128.362 kb on + strand, within Psyr_4302at 5128.363 kb on - strand, within Psyr_4302at 5128.578 kb on + strand, within Psyr_4302at 5128.578 kb on + strand, within Psyr_4302at 5128.578 kb on + strand, within Psyr_4302at 5128.578 kb on + strand, within Psyr_4302at 5128.579 kb on - strand, within Psyr_4302at 5128.579 kb on - strand, within Psyr_4302at 5128.678 kb on + strand, within Psyr_4302at 5128.679 kb on - strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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5,126,436 + Psyr_4299 0.27 -0.1
5,126,437 - Psyr_4299 0.27 +0.5
5,126,437 - Psyr_4299 0.27 -0.8
5,126,463 - Psyr_4299 0.33 +1.0
5,126,553 - Psyr_4299 0.52 -1.4
5,126,553 - Psyr_4299 0.52 -1.2
5,126,553 - Psyr_4299 0.52 -1.8
5,126,553 - Psyr_4299 0.52 -0.8
5,126,617 - Psyr_4299 0.66 +0.9
5,126,744 + -0.8
5,126,744 + -0.8
5,126,744 + -0.4
5,126,744 + +1.6
5,126,745 - +0.8
5,127,094 + Psyr_4300 0.51 -2.4
5,127,094 + Psyr_4300 0.51 -0.8
5,127,095 - Psyr_4300 0.51 +0.4
5,127,248 + Psyr_4300 0.76 -1.3
5,127,248 + Psyr_4300 0.76 -1.1
5,127,339 - -0.6
5,127,383 + -1.4
5,127,384 - +2.8
5,127,384 - +1.1
5,127,384 - -0.9
5,127,384 - -0.6
5,127,384 - -0.4
5,127,384 - -0.1
5,127,411 - -0.1
5,127,411 - -0.6
5,127,500 - Psyr_4301 0.18 +1.3
5,127,669 - Psyr_4301 0.53 +1.6
5,127,670 + Psyr_4301 0.54 +0.8
5,127,671 - Psyr_4301 0.54 +1.5
5,127,671 - Psyr_4301 0.54 +1.8
5,127,671 - Psyr_4301 0.54 +0.2
5,127,671 - Psyr_4301 0.54 +0.5
5,127,671 - Psyr_4301 0.54 -1.5
5,127,671 - Psyr_4301 0.54 +0.4
5,127,671 - Psyr_4301 0.54 +1.1
5,127,671 - Psyr_4301 0.54 +0.6
5,127,671 - Psyr_4301 0.54 +0.1
5,127,671 - Psyr_4301 0.54 -0.4
5,127,709 - Psyr_4301 0.62 -1.1
5,127,811 + Psyr_4301 0.83 +3.4
5,127,847 + +3.8
5,127,847 + -2.4
5,127,847 + -0.1
5,127,847 + +0.2
5,127,847 + -1.7
5,127,847 + +0.5
5,127,847 + +0.6
5,127,848 - -2.8
5,127,848 - -1.4
5,127,848 - +0.5
5,127,848 - -0.6
5,127,848 - -1.3
5,127,850 + -0.5
5,127,850 + -1.4
5,127,850 + -0.0
5,127,850 + -0.8
5,127,851 - +2.1
5,127,851 - +0.3
5,127,958 + +0.1
5,127,958 + +0.6
5,128,235 + -0.7
5,128,235 + +1.8
5,128,236 - +0.5
5,128,236 - +0.2
5,128,362 + Psyr_4302 0.27 +2.2
5,128,363 - Psyr_4302 0.27 +0.6
5,128,578 + Psyr_4302 0.58 -0.1
5,128,578 + Psyr_4302 0.58 -1.8
5,128,578 + Psyr_4302 0.58 +0.2
5,128,578 + Psyr_4302 0.58 -1.9
5,128,579 - Psyr_4302 0.58 -0.6
5,128,579 - Psyr_4302 0.58 -0.1
5,128,678 + Psyr_4302 0.72 +0.1
5,128,679 - Psyr_4302 0.72 -0.4
5,128,736 + Psyr_4302 0.80 -0.8
5,128,736 + Psyr_4302 0.80 -0.1
5,128,736 + Psyr_4302 0.80 +0.5
5,128,736 + Psyr_4302 0.80 +0.2
5,128,736 + Psyr_4302 0.80 -0.4
5,128,736 + Psyr_4302 0.80 +0.3
5,128,736 + Psyr_4302 0.80 -0.5
5,128,736 + Psyr_4302 0.80 -0.6
5,128,737 - Psyr_4302 0.80 +0.2
5,128,737 - Psyr_4302 0.80 -0.1
5,128,737 - Psyr_4302 0.80 -1.1
5,128,737 - Psyr_4302 0.80 -1.1
5,128,737 - Psyr_4302 0.80 -0.4
5,128,737 - Psyr_4302 0.80 -0.1
5,128,737 - Psyr_4302 0.80 +0.9
5,128,737 - Psyr_4302 0.80 +0.4
5,128,737 - Psyr_4302 0.80 -0.4
5,128,737 - Psyr_4302 0.80 -0.8
5,128,737 - Psyr_4302 0.80 -0.4

Or see this region's nucleotide sequence