Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4283 and Psyr_4284 overlap by 4 nucleotides Psyr_4284 and Psyr_4285 overlap by 4 nucleotides Psyr_4285 and Psyr_4286 are separated by 265 nucleotides
Psyr_4283: Psyr_4283 - xanthine dehydrogenase, molybdenum binding subunit apoprotein, at 5,107,520 to 5,109,721
_4283
Psyr_4284: Psyr_4284 - Molybdopterin dehydrogenase, FAD-binding:CO dehydrogenase flavoprotein, C-terminal, at 5,109,718 to 5,110,707
_4284
Psyr_4285: Psyr_4285 - Ferredoxin:[2Fe-2S]-binding protein, at 5,110,704 to 5,111,234
_4285
Psyr_4286: Psyr_4286 - Xanthine/uracil/vitamin C permease, at 5,111,500 to 5,112,795
_4286
Position (kb) 5110
5111
5112 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5110.004 kb on + strand, within Psyr_4284 at 5110.004 kb on + strand, within Psyr_4284 at 5110.005 kb on - strand, within Psyr_4284 at 5110.031 kb on + strand, within Psyr_4284 at 5110.032 kb on - strand, within Psyr_4284 at 5110.032 kb on - strand, within Psyr_4284 at 5110.346 kb on + strand, within Psyr_4284 at 5110.346 kb on + strand, within Psyr_4284 at 5110.346 kb on + strand, within Psyr_4284 at 5110.347 kb on - strand, within Psyr_4284 at 5110.347 kb on - strand, within Psyr_4284 at 5110.347 kb on - strand, within Psyr_4284 at 5110.352 kb on + strand, within Psyr_4284 at 5110.352 kb on + strand, within Psyr_4284 at 5110.352 kb on + strand, within Psyr_4284 at 5110.352 kb on + strand, within Psyr_4284 at 5110.352 kb on + strand, within Psyr_4284 at 5110.353 kb on - strand, within Psyr_4284 at 5110.353 kb on - strand, within Psyr_4284 at 5110.353 kb on - strand, within Psyr_4284 at 5110.356 kb on - strand, within Psyr_4284 at 5110.356 kb on - strand, within Psyr_4284 at 5110.691 kb on + strand at 5110.691 kb on + strand at 5110.691 kb on + strand at 5110.691 kb on + strand at 5110.692 kb on - strand at 5110.692 kb on - strand at 5110.692 kb on - strand at 5110.696 kb on - strand at 5110.696 kb on - strand at 5110.775 kb on + strand, within Psyr_4285 at 5110.775 kb on + strand, within Psyr_4285 at 5110.776 kb on - strand, within Psyr_4285 at 5110.784 kb on - strand, within Psyr_4285 at 5111.049 kb on + strand, within Psyr_4285 at 5111.261 kb on - strand at 5111.272 kb on + strand at 5111.272 kb on + strand at 5111.333 kb on + strand at 5111.333 kb on + strand at 5111.333 kb on + strand at 5111.333 kb on + strand at 5111.333 kb on + strand at 5111.333 kb on + strand at 5111.333 kb on + strand at 5111.334 kb on - strand at 5111.334 kb on - strand at 5111.334 kb on - strand at 5111.334 kb on - strand at 5111.387 kb on + strand at 5111.387 kb on + strand at 5111.388 kb on - strand at 5111.388 kb on - strand at 5111.388 kb on - strand at 5111.590 kb on + strand at 5111.590 kb on + strand at 5111.590 kb on + strand at 5111.590 kb on + strand at 5111.590 kb on + strand at 5111.590 kb on + strand at 5111.590 kb on + strand at 5111.590 kb on + strand at 5111.591 kb on - strand at 5111.591 kb on - strand at 5111.591 kb on - strand at 5111.591 kb on - strand at 5111.591 kb on - strand at 5111.591 kb on - strand at 5111.591 kb on - strand at 5111.754 kb on + strand, within Psyr_4286 at 5111.754 kb on + strand, within Psyr_4286 at 5111.754 kb on + strand, within Psyr_4286 at 5111.755 kb on - strand, within Psyr_4286 at 5111.758 kb on + strand, within Psyr_4286 at 5111.758 kb on + strand, within Psyr_4286 at 5111.758 kb on + strand, within Psyr_4286 at 5111.759 kb on - strand, within Psyr_4286 at 5111.759 kb on - strand, within Psyr_4286 at 5111.759 kb on - strand, within Psyr_4286 at 5111.759 kb on - strand, within Psyr_4286 at 5111.759 kb on - strand, within Psyr_4286 at 5111.795 kb on + strand, within Psyr_4286 at 5111.875 kb on - strand, within Psyr_4286 at 5111.875 kb on - strand, within Psyr_4286 at 5111.875 kb on - strand, within Psyr_4286 at 5111.955 kb on + strand, within Psyr_4286 at 5112.058 kb on + strand, within Psyr_4286 at 5112.058 kb on + strand, within Psyr_4286 at 5112.059 kb on - strand, within Psyr_4286
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 5,110,004 + Psyr_4284 0.29 -0.1 5,110,004 + Psyr_4284 0.29 -0.8 5,110,005 - Psyr_4284 0.29 -1.2 5,110,031 + Psyr_4284 0.32 +0.5 5,110,032 - Psyr_4284 0.32 -0.7 5,110,032 - Psyr_4284 0.32 +0.6 5,110,346 + Psyr_4284 0.63 +0.2 5,110,346 + Psyr_4284 0.63 -0.4 5,110,346 + Psyr_4284 0.63 +0.4 5,110,347 - Psyr_4284 0.64 -3.0 5,110,347 - Psyr_4284 0.64 -0.0 5,110,347 - Psyr_4284 0.64 +0.7 5,110,352 + Psyr_4284 0.64 +0.7 5,110,352 + Psyr_4284 0.64 +0.6 5,110,352 + Psyr_4284 0.64 +1.2 5,110,352 + Psyr_4284 0.64 +0.3 5,110,352 + Psyr_4284 0.64 -0.5 5,110,353 - Psyr_4284 0.64 -0.9 5,110,353 - Psyr_4284 0.64 -0.3 5,110,353 - Psyr_4284 0.64 -1.3 5,110,356 - Psyr_4284 0.64 -1.1 5,110,356 - Psyr_4284 0.64 +0.3 5,110,691 + -0.4 5,110,691 + +1.5 5,110,691 + -0.1 5,110,691 + +1.4 5,110,692 - +0.7 5,110,692 - -1.1 5,110,692 - -0.1 5,110,696 - +0.6 5,110,696 - -1.9 5,110,775 + Psyr_4285 0.13 +0.8 5,110,775 + Psyr_4285 0.13 +1.1 5,110,776 - Psyr_4285 0.14 +0.3 5,110,784 - Psyr_4285 0.15 -2.1 5,111,049 + Psyr_4285 0.65 -0.4 5,111,261 - -0.7 5,111,272 + -0.2 5,111,272 + -0.9 5,111,333 + +0.1 5,111,333 + +0.4 5,111,333 + -0.8 5,111,333 + -1.0 5,111,333 + +1.6 5,111,333 + +0.4 5,111,333 + -2.2 5,111,334 - +2.8 5,111,334 - -0.9 5,111,334 - +1.2 5,111,334 - -2.5 5,111,387 + -0.5 5,111,387 + -0.4 5,111,388 - +0.3 5,111,388 - -0.6 5,111,388 - -0.5 5,111,590 + -0.2 5,111,590 + -1.1 5,111,590 + -0.6 5,111,590 + +1.6 5,111,590 + +0.1 5,111,590 + +2.2 5,111,590 + +3.2 5,111,590 + -1.1 5,111,591 - +0.0 5,111,591 - +0.1 5,111,591 - -0.7 5,111,591 - -1.1 5,111,591 - +0.6 5,111,591 - -1.2 5,111,591 - +0.5 5,111,754 + Psyr_4286 0.20 +0.9 5,111,754 + Psyr_4286 0.20 -1.0 5,111,754 + Psyr_4286 0.20 +0.0 5,111,755 - Psyr_4286 0.20 -1.9 5,111,758 + Psyr_4286 0.20 -0.2 5,111,758 + Psyr_4286 0.20 -0.2 5,111,758 + Psyr_4286 0.20 -0.1 5,111,759 - Psyr_4286 0.20 -0.5 5,111,759 - Psyr_4286 0.20 +0.1 5,111,759 - Psyr_4286 0.20 +0.2 5,111,759 - Psyr_4286 0.20 +1.2 5,111,759 - Psyr_4286 0.20 -0.1 5,111,795 + Psyr_4286 0.23 +2.8 5,111,875 - Psyr_4286 0.29 +1.0 5,111,875 - Psyr_4286 0.29 -0.4 5,111,875 - Psyr_4286 0.29 +1.8 5,111,955 + Psyr_4286 0.35 -1.6 5,112,058 + Psyr_4286 0.43 +1.2 5,112,058 + Psyr_4286 0.43 -0.1 5,112,059 - Psyr_4286 0.43 -0.4
Or see this region's nucleotide sequence