Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4209

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
5,012,215	+		Psyr_4208	0.66	+0.2
5,012,216	-		Psyr_4208	0.66	-0.5
5,012,216	-		Psyr_4208	0.66	+0.9
5,012,216	-		Psyr_4208	0.66	+1.5
5,012,216	-		Psyr_4208	0.66	-0.8
5,012,216	-		Psyr_4208	0.66	+1.6
5,012,338	+		Psyr_4208	0.71	-3.3
5,012,573	+		Psyr_4208	0.81	-0.1
5,012,573	+		Psyr_4208	0.81	-0.2
5,012,573	+		Psyr_4208	0.81	+0.3
5,012,573	+		Psyr_4208	0.81	-1.3
5,012,574	-		Psyr_4208	0.81	-0.8
5,012,574	-		Psyr_4208	0.81	+0.7
5,012,574	-		Psyr_4208	0.81	-2.9
5,012,574	-		Psyr_4208	0.81	-0.2
5,012,574	-		Psyr_4208	0.81	+0.2
5,012,574	-		Psyr_4208	0.81	+0.7
5,012,574	-		Psyr_4208	0.81	+0.9
5,012,646	+		Psyr_4208	0.85	-0.1
5,012,646	+		Psyr_4208	0.85	-1.3
5,012,646	+		Psyr_4208	0.85	+1.2
5,012,647	-		Psyr_4208	0.85	+3.2
5,012,647	-		Psyr_4208	0.85	-0.2
5,012,797	+				+1.8
5,012,903	+				-0.4
5,012,903	+				-0.6
5,012,903	+				-1.6
5,012,903	+				+1.0
5,012,904	-				+0.0
5,012,904	-				+2.2
5,012,904	-				-0.5
5,012,904	-				+2.1
5,012,904	-				-0.1
5,012,998	+				+0.3
5,012,998	+				-1.4
5,012,998	+				+2.7
5,012,998	+				+0.4
5,012,998	+				-0.1
5,012,998	+				-0.1
5,012,998	+				+0.7
5,012,998	+				-0.8
5,012,999	-				+1.7
5,012,999	-				-1.4
5,012,999	-				+1.0
5,012,999	-				+0.4
5,012,999	-				+0.5
5,012,999	-				-0.8
5,012,999	-				-0.2
5,012,999	-				+1.5
5,012,999	-				+1.1
5,013,078	-				+0.6
5,013,249	+		Psyr_4209	0.13	-0.7
5,013,259	+		Psyr_4209	0.14	-0.2
5,013,259	+		Psyr_4209	0.14	+0.4
5,013,259	+		Psyr_4209	0.14	-0.2
5,013,260	-		Psyr_4209	0.14	+0.7
5,013,260	-		Psyr_4209	0.14	-1.3
5,013,260	-		Psyr_4209	0.14	+3.7
5,013,260	-		Psyr_4209	0.14	+0.1
5,013,260	-		Psyr_4209	0.14	+0.8
5,013,260	-		Psyr_4209	0.14	-0.3
5,013,260	-		Psyr_4209	0.14	+0.2
5,013,260	-		Psyr_4209	0.14	+0.6
5,013,260	-		Psyr_4209	0.14	-0.8
5,013,260	-		Psyr_4209	0.14	+0.7
5,013,260	-		Psyr_4209	0.14	-2.3
5,013,569	-		Psyr_4209	0.38	+1.1
5,013,569	-		Psyr_4209	0.38	+0.9
5,013,569	-		Psyr_4209	0.38	+2.2
5,013,672	-		Psyr_4209	0.45	-1.4
5,013,723	+		Psyr_4209	0.49	+0.0
5,013,723	+		Psyr_4209	0.49	+0.7
5,013,817	+		Psyr_4209	0.57	+0.6
5,013,836	+		Psyr_4209	0.58	+0.6
5,013,836	+		Psyr_4209	0.58	+0.4
5,013,836	+		Psyr_4209	0.58	+0.2
5,013,836	+		Psyr_4209	0.58	-1.7
5,013,837	-		Psyr_4209	0.58	+1.2
5,013,837	-		Psyr_4209	0.58	+1.7
5,013,837	-		Psyr_4209	0.58	-1.0
5,013,848	+		Psyr_4209	0.59	-0.7
5,013,848	+		Psyr_4209	0.59	-0.4
5,013,849	-		Psyr_4209	0.59	+2.2
5,013,948	+		Psyr_4209	0.67	+0.6
5,013,948	+		Psyr_4209	0.67	+1.3
5,013,949	-		Psyr_4209	0.67	+0.8
5,013,985	+		Psyr_4209	0.69	-0.1
5,013,986	-		Psyr_4209	0.70	-0.6
5,013,986	-		Psyr_4209	0.70	+2.1
5,013,986	-		Psyr_4209	0.70	+0.2
5,014,218	+		Psyr_4209	0.87	-1.0
5,014,218	+		Psyr_4209	0.87	-0.6
5,014,218	+		Psyr_4209	0.87	+0.6
5,014,218	+		Psyr_4209	0.87	+2.6
5,014,219	-		Psyr_4209	0.87	-0.4
5,014,219	-		Psyr_4209	0.87	+3.0
5,014,219	-		Psyr_4209	0.87	-1.7
5,014,219	-		Psyr_4209	0.87	-0.7
5,014,219	-		Psyr_4209	0.87	-0.2
5,014,219	-		Psyr_4209	0.87	+0.2
5,014,332	+				+0.4
5,014,332	+				+0.7
5,014,332	+				-0.6
5,014,332	+				+1.8
5,014,332	+				+1.3
5,014,333	-				-1.6
5,014,333	-				-0.8
5,014,333	-				-1.1
5,014,333	-				+0.7
5,014,402	-				-0.1
5,014,464	+				+0.8
5,014,464	+				+0.2
5,014,464	+				-0.2
5,014,465	-				+0.8
5,014,616	+				-1.6
5,014,616	+				-0.5
5,014,616	+				+0.2
5,014,617	-				-0.3