Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4175

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4173 and Psyr_4174 overlap by 4 nucleotidesPsyr_4174 and Psyr_4175 are separated by 148 nucleotidesPsyr_4175 and Psyr_4176 are separated by 288 nucleotides Psyr_4173: Psyr_4173 - Protein of unknown function DUF748, at 4,963,203 to 4,966,232 _4173 Psyr_4174: Psyr_4174 - conserved hypothetical protein, at 4,966,229 to 4,966,567 _4174 Psyr_4175: Psyr_4175 - Transport-associated protein, at 4,966,716 to 4,967,069 _4175 Psyr_4176: Psyr_4176 - Polyribonucleotide nucleotidyltransferase, at 4,967,358 to 4,969,463 _4176 Position (kb) 4966 4967 4968Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4965.852 kb on + strand, within Psyr_4173at 4965.852 kb on + strand, within Psyr_4173at 4965.853 kb on - strand, within Psyr_4173at 4965.858 kb on + strand, within Psyr_4173at 4965.858 kb on + strand, within Psyr_4173at 4965.858 kb on + strand, within Psyr_4173at 4965.858 kb on + strand, within Psyr_4173at 4965.858 kb on + strand, within Psyr_4173at 4965.858 kb on + strand, within Psyr_4173at 4965.858 kb on + strand, within Psyr_4173at 4965.858 kb on + strand, within Psyr_4173at 4965.858 kb on + strand, within Psyr_4173at 4965.858 kb on + strand, within Psyr_4173at 4965.858 kb on + strand, within Psyr_4173at 4965.858 kb on + strand, within Psyr_4173at 4965.858 kb on + strand, within Psyr_4173at 4965.859 kb on - strand, within Psyr_4173at 4965.859 kb on - strand, within Psyr_4173at 4965.859 kb on - strand, within Psyr_4173at 4965.859 kb on - strand, within Psyr_4173at 4965.859 kb on - strand, within Psyr_4173at 4965.859 kb on - strand, within Psyr_4173at 4965.859 kb on - strand, within Psyr_4173at 4965.861 kb on + strand, within Psyr_4173at 4965.861 kb on + strand, within Psyr_4173at 4965.861 kb on + strand, within Psyr_4173at 4965.861 kb on + strand, within Psyr_4173at 4965.861 kb on + strand, within Psyr_4173at 4965.862 kb on - strand, within Psyr_4173at 4965.862 kb on - strand, within Psyr_4173at 4965.862 kb on - strand, within Psyr_4173at 4965.862 kb on - strand, within Psyr_4173at 4965.862 kb on - strand, within Psyr_4173at 4965.914 kb on - strand, within Psyr_4173at 4965.954 kb on - strandat 4965.954 kb on - strandat 4965.957 kb on + strandat 4965.957 kb on + strandat 4965.957 kb on + strandat 4965.957 kb on + strandat 4965.957 kb on + strandat 4965.958 kb on - strandat 4965.958 kb on - strandat 4965.958 kb on - strandat 4966.117 kb on - strandat 4966.197 kb on - strandat 4966.197 kb on - strandat 4966.313 kb on + strand, within Psyr_4174at 4966.313 kb on + strand, within Psyr_4174at 4966.313 kb on + strand, within Psyr_4174at 4966.313 kb on + strand, within Psyr_4174at 4966.313 kb on + strand, within Psyr_4174at 4966.439 kb on - strand, within Psyr_4174at 4966.446 kb on - strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.484 kb on + strand, within Psyr_4174at 4966.485 kb on - strand, within Psyr_4174at 4966.485 kb on - strand, within Psyr_4174at 4966.485 kb on - strand, within Psyr_4174at 4966.485 kb on - strand, within Psyr_4174at 4966.485 kb on - strand, within Psyr_4174at 4966.485 kb on - strand, within Psyr_4174at 4966.485 kb on - strand, within Psyr_4174at 4966.485 kb on - strand, within Psyr_4174at 4966.485 kb on - strand, within Psyr_4174at 4966.505 kb on + strand, within Psyr_4174at 4966.505 kb on + strand, within Psyr_4174at 4966.505 kb on + strand, within Psyr_4174at 4966.505 kb on + strand, within Psyr_4174at 4966.505 kb on + strand, within Psyr_4174at 4966.505 kb on + strand, within Psyr_4174at 4966.505 kb on + strand, within Psyr_4174at 4966.505 kb on + strand, within Psyr_4174at 4966.505 kb on + strand, within Psyr_4174at 4966.505 kb on + strand, within Psyr_4174at 4966.505 kb on + strand, within Psyr_4174at 4966.505 kb on + strand, within Psyr_4174at 4966.505 kb on + strand, within Psyr_4174at 4966.505 kb on + strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.506 kb on - strand, within Psyr_4174at 4966.512 kb on - strand, within Psyr_4174at 4966.512 kb on - strand, within Psyr_4174at 4966.539 kb on + strandat 4966.607 kb on + strandat 4966.607 kb on + strandat 4966.608 kb on - strandat 4966.647 kb on + strandat 4966.648 kb on - strandat 4966.648 kb on - strandat 4966.658 kb on - strandat 4966.658 kb on - strandat 4966.658 kb on - strandat 4966.709 kb on + strandat 4966.751 kb on + strandat 4966.751 kb on + strandat 4966.752 kb on - strand, within Psyr_4175at 4966.859 kb on + strand, within Psyr_4175at 4966.859 kb on + strand, within Psyr_4175at 4966.860 kb on - strand, within Psyr_4175at 4966.860 kb on - strand, within Psyr_4175at 4966.860 kb on - strand, within Psyr_4175at 4966.931 kb on + strand, within Psyr_4175at 4966.931 kb on + strand, within Psyr_4175at 4966.931 kb on + strand, within Psyr_4175at 4966.931 kb on + strand, within Psyr_4175at 4966.931 kb on + strand, within Psyr_4175at 4966.932 kb on - strand, within Psyr_4175at 4966.932 kb on - strand, within Psyr_4175at 4966.932 kb on - strand, within Psyr_4175at 4966.932 kb on - strand, within Psyr_4175at 4966.932 kb on - strand, within Psyr_4175at 4966.932 kb on - strand, within Psyr_4175at 4966.961 kb on + strand, within Psyr_4175at 4966.961 kb on + strand, within Psyr_4175at 4966.962 kb on - strand, within Psyr_4175at 4966.977 kb on - strand, within Psyr_4175at 4967.069 kb on + strandat 4967.070 kb on - strandat 4967.075 kb on - strandat 4967.188 kb on + strandat 4967.291 kb on - strandat 4967.298 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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4,965,852 + Psyr_4173 0.87 -2.1
4,965,852 + Psyr_4173 0.87 -0.4
4,965,853 - Psyr_4173 0.87 -0.9
4,965,858 + Psyr_4173 0.88 -0.6
4,965,858 + Psyr_4173 0.88 -0.8
4,965,858 + Psyr_4173 0.88 -0.7
4,965,858 + Psyr_4173 0.88 +2.2
4,965,858 + Psyr_4173 0.88 -2.4
4,965,858 + Psyr_4173 0.88 -2.3
4,965,858 + Psyr_4173 0.88 +2.7
4,965,858 + Psyr_4173 0.88 +0.8
4,965,858 + Psyr_4173 0.88 +0.1
4,965,858 + Psyr_4173 0.88 +0.3
4,965,858 + Psyr_4173 0.88 -0.2
4,965,858 + Psyr_4173 0.88 -1.3
4,965,858 + Psyr_4173 0.88 -0.3
4,965,859 - Psyr_4173 0.88 +3.2
4,965,859 - Psyr_4173 0.88 +0.3
4,965,859 - Psyr_4173 0.88 +0.7
4,965,859 - Psyr_4173 0.88 +1.5
4,965,859 - Psyr_4173 0.88 -0.2
4,965,859 - Psyr_4173 0.88 +0.7
4,965,859 - Psyr_4173 0.88 +1.6
4,965,861 + Psyr_4173 0.88 -1.5
4,965,861 + Psyr_4173 0.88 -0.7
4,965,861 + Psyr_4173 0.88 -0.1
4,965,861 + Psyr_4173 0.88 -0.8
4,965,861 + Psyr_4173 0.88 +0.8
4,965,862 - Psyr_4173 0.88 +2.2
4,965,862 - Psyr_4173 0.88 +0.4
4,965,862 - Psyr_4173 0.88 -0.3
4,965,862 - Psyr_4173 0.88 +2.3
4,965,862 - Psyr_4173 0.88 -1.1
4,965,914 - Psyr_4173 0.89 -0.1
4,965,954 - +0.1
4,965,954 - -0.4
4,965,957 + -0.8
4,965,957 + +0.2
4,965,957 + +0.1
4,965,957 + -1.5
4,965,957 + +0.5
4,965,958 - +0.8
4,965,958 - -1.9
4,965,958 - -0.4
4,966,117 - +0.2
4,966,197 - -0.9
4,966,197 - +1.7
4,966,313 + Psyr_4174 0.25 +1.4
4,966,313 + Psyr_4174 0.25 -0.4
4,966,313 + Psyr_4174 0.25 +0.3
4,966,313 + Psyr_4174 0.25 -0.2
4,966,313 + Psyr_4174 0.25 +0.2
4,966,439 - Psyr_4174 0.62 -0.4
4,966,446 - Psyr_4174 0.64 -0.4
4,966,484 + Psyr_4174 0.75 -0.5
4,966,484 + Psyr_4174 0.75 -0.4
4,966,484 + Psyr_4174 0.75 +0.6
4,966,484 + Psyr_4174 0.75 +0.6
4,966,484 + Psyr_4174 0.75 -0.0
4,966,484 + Psyr_4174 0.75 -1.0
4,966,484 + Psyr_4174 0.75 +0.2
4,966,484 + Psyr_4174 0.75 -0.0
4,966,484 + Psyr_4174 0.75 -0.4
4,966,484 + Psyr_4174 0.75 -1.4
4,966,484 + Psyr_4174 0.75 -0.4
4,966,484 + Psyr_4174 0.75 +0.0
4,966,484 + Psyr_4174 0.75 +0.4
4,966,484 + Psyr_4174 0.75 +0.3
4,966,484 + Psyr_4174 0.75 +0.6
4,966,484 + Psyr_4174 0.75 -1.3
4,966,485 - Psyr_4174 0.76 -1.7
4,966,485 - Psyr_4174 0.76 -0.5
4,966,485 - Psyr_4174 0.76 -0.2
4,966,485 - Psyr_4174 0.76 +0.5
4,966,485 - Psyr_4174 0.76 +0.6
4,966,485 - Psyr_4174 0.76 -0.1
4,966,485 - Psyr_4174 0.76 -1.1
4,966,485 - Psyr_4174 0.76 -0.9
4,966,485 - Psyr_4174 0.76 -1.4
4,966,505 + Psyr_4174 0.81 +0.1
4,966,505 + Psyr_4174 0.81 -0.6
4,966,505 + Psyr_4174 0.81 -0.6
4,966,505 + Psyr_4174 0.81 -0.5
4,966,505 + Psyr_4174 0.81 -1.2
4,966,505 + Psyr_4174 0.81 +0.3
4,966,505 + Psyr_4174 0.81 +0.0
4,966,505 + Psyr_4174 0.81 +0.7
4,966,505 + Psyr_4174 0.81 -0.3
4,966,505 + Psyr_4174 0.81 +1.2
4,966,505 + Psyr_4174 0.81 -1.5
4,966,505 + Psyr_4174 0.81 -2.2
4,966,505 + Psyr_4174 0.81 -0.3
4,966,505 + Psyr_4174 0.81 -1.0
4,966,506 - Psyr_4174 0.82 +1.2
4,966,506 - Psyr_4174 0.82 +1.8
4,966,506 - Psyr_4174 0.82 -1.4
4,966,506 - Psyr_4174 0.82 +0.4
4,966,506 - Psyr_4174 0.82 -1.2
4,966,506 - Psyr_4174 0.82 -0.8
4,966,506 - Psyr_4174 0.82 +1.0
4,966,506 - Psyr_4174 0.82 -0.1
4,966,506 - Psyr_4174 0.82 +0.5
4,966,506 - Psyr_4174 0.82 +2.2
4,966,506 - Psyr_4174 0.82 -0.0
4,966,506 - Psyr_4174 0.82 +1.2
4,966,506 - Psyr_4174 0.82 +0.3
4,966,506 - Psyr_4174 0.82 +1.1
4,966,506 - Psyr_4174 0.82 +1.5
4,966,506 - Psyr_4174 0.82 -1.3
4,966,512 - Psyr_4174 0.83 +1.4
4,966,512 - Psyr_4174 0.83 +0.6
4,966,539 + -0.2
4,966,607 + -0.7
4,966,607 + +0.2
4,966,608 - +1.0
4,966,647 + +1.3
4,966,648 - +1.3
4,966,648 - -0.8
4,966,658 - -0.6
4,966,658 - +0.5
4,966,658 - -0.4
4,966,709 + +0.6
4,966,751 + -0.6
4,966,751 + -0.2
4,966,752 - Psyr_4175 0.10 +2.1
4,966,859 + Psyr_4175 0.40 +0.5
4,966,859 + Psyr_4175 0.40 -2.3
4,966,860 - Psyr_4175 0.41 +2.0
4,966,860 - Psyr_4175 0.41 +1.0
4,966,860 - Psyr_4175 0.41 +1.5
4,966,931 + Psyr_4175 0.61 +0.9
4,966,931 + Psyr_4175 0.61 +2.8
4,966,931 + Psyr_4175 0.61 -3.5
4,966,931 + Psyr_4175 0.61 -1.0
4,966,931 + Psyr_4175 0.61 +0.7
4,966,932 - Psyr_4175 0.61 -1.6
4,966,932 - Psyr_4175 0.61 +1.8
4,966,932 - Psyr_4175 0.61 +0.7
4,966,932 - Psyr_4175 0.61 +3.3
4,966,932 - Psyr_4175 0.61 +1.6
4,966,932 - Psyr_4175 0.61 +0.7
4,966,961 + Psyr_4175 0.69 -0.3
4,966,961 + Psyr_4175 0.69 -1.0
4,966,962 - Psyr_4175 0.69 -0.8
4,966,977 - Psyr_4175 0.74 +1.2
4,967,069 + -0.1
4,967,070 - -0.0
4,967,075 - -0.6
4,967,188 + +0.4
4,967,291 - +1.7
4,967,298 + -0.6

Or see this region's nucleotide sequence