Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4159 and Psyr_4160 overlap by 4 nucleotides Psyr_4160 and Psyr_4161 are separated by 67 nucleotides Psyr_4161 and Psyr_4162 overlap by 8 nucleotides
Psyr_4159: Psyr_4159 - RNAse G, at 4,948,683 to 4,950,140
_4159
Psyr_4160: Psyr_4160 - Maf-like protein, at 4,950,137 to 4,950,739
_4160
Psyr_4161: Psyr_4161 - Rod shape-determining protein MreD, at 4,950,807 to 4,951,298
_4161
Psyr_4162: Psyr_4162 - rod shape-determining protein MreC, at 4,951,291 to 4,952,364
_4162
Position (kb) 4950
4951
4952 Strain fitness (log2 ratio) -1
0
1
2 at 4949.877 kb on + strand, within Psyr_4159 at 4949.877 kb on + strand, within Psyr_4159 at 4949.877 kb on + strand, within Psyr_4159 at 4949.877 kb on + strand, within Psyr_4159 at 4949.877 kb on + strand, within Psyr_4159 at 4949.878 kb on - strand, within Psyr_4159 at 4949.922 kb on + strand, within Psyr_4159 at 4949.923 kb on - strand, within Psyr_4159 at 4949.923 kb on - strand, within Psyr_4159 at 4950.016 kb on + strand at 4950.016 kb on + strand at 4950.016 kb on + strand at 4950.016 kb on + strand at 4950.016 kb on + strand at 4950.017 kb on - strand at 4950.017 kb on - strand at 4950.017 kb on - strand at 4950.021 kb on - strand at 4950.174 kb on - strand at 4950.234 kb on + strand, within Psyr_4160 at 4950.235 kb on - strand, within Psyr_4160 at 4950.235 kb on - strand, within Psyr_4160 at 4950.235 kb on - strand, within Psyr_4160 at 4950.373 kb on + strand, within Psyr_4160 at 4950.609 kb on + strand, within Psyr_4160 at 4950.609 kb on + strand, within Psyr_4160 at 4950.609 kb on + strand, within Psyr_4160 at 4950.609 kb on + strand, within Psyr_4160 at 4950.610 kb on - strand, within Psyr_4160 at 4950.610 kb on - strand, within Psyr_4160 at 4950.662 kb on + strand, within Psyr_4160 at 4950.662 kb on + strand, within Psyr_4160 at 4950.727 kb on - strand at 4950.740 kb on - strand at 4950.808 kb on + strand at 4950.808 kb on + strand at 4950.847 kb on + strand at 4950.848 kb on - strand at 4950.967 kb on - strand, within Psyr_4161 at 4951.135 kb on + strand, within Psyr_4161 at 4951.135 kb on + strand, within Psyr_4161 at 4951.136 kb on - strand, within Psyr_4161 at 4951.303 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 4,949,877 + Psyr_4159 0.82 +0.2 4,949,877 + Psyr_4159 0.82 -1.5 4,949,877 + Psyr_4159 0.82 -0.8 4,949,877 + Psyr_4159 0.82 -0.0 4,949,877 + Psyr_4159 0.82 +1.5 4,949,878 - Psyr_4159 0.82 -0.6 4,949,922 + Psyr_4159 0.85 -1.2 4,949,923 - Psyr_4159 0.85 -0.2 4,949,923 - Psyr_4159 0.85 -0.2 4,950,016 + +1.7 4,950,016 + +1.3 4,950,016 + +1.0 4,950,016 + -1.6 4,950,016 + -0.2 4,950,017 - +1.2 4,950,017 - -0.5 4,950,017 - -0.4 4,950,021 - -0.3 4,950,174 - -0.5 4,950,234 + Psyr_4160 0.16 +0.3 4,950,235 - Psyr_4160 0.16 +2.2 4,950,235 - Psyr_4160 0.16 -0.0 4,950,235 - Psyr_4160 0.16 +0.9 4,950,373 + Psyr_4160 0.39 -0.1 4,950,609 + Psyr_4160 0.78 -0.4 4,950,609 + Psyr_4160 0.78 +1.2 4,950,609 + Psyr_4160 0.78 +0.0 4,950,609 + Psyr_4160 0.78 +0.9 4,950,610 - Psyr_4160 0.78 -0.4 4,950,610 - Psyr_4160 0.78 +0.2 4,950,662 + Psyr_4160 0.87 +0.5 4,950,662 + Psyr_4160 0.87 +1.2 4,950,727 - -0.3 4,950,740 - +0.0 4,950,808 + +0.9 4,950,808 + -1.0 4,950,847 + +2.2 4,950,848 - -1.4 4,950,967 - Psyr_4161 0.33 +1.2 4,951,135 + Psyr_4161 0.67 -1.0 4,951,135 + Psyr_4161 0.67 -1.3 4,951,136 - Psyr_4161 0.67 +1.1 4,951,303 - -0.2
Or see this region's nucleotide sequence