Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4158

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4156 and Psyr_4157 are separated by 2 nucleotidesPsyr_4157 and Psyr_4158 are separated by 48 nucleotidesPsyr_4158 and Psyr_4159 are separated by 180 nucleotides Psyr_4156: Psyr_4156 - microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62, at 4,942,351 to 4,943,790 _4156 Psyr_4157: Psyr_4157 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 4,943,793 to 4,944,638 _4157 Psyr_4158: Psyr_4158 - conserved hypothetical protein, at 4,944,687 to 4,948,502 _4158 Psyr_4159: Psyr_4159 - RNAse G, at 4,948,683 to 4,950,140 _4159 Position (kb) 4944 4945 4946 4947 4948 4949Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4943.790 kb on + strandat 4943.790 kb on + strandat 4943.790 kb on + strandat 4943.790 kb on + strandat 4943.790 kb on + strandat 4943.790 kb on + strandat 4943.791 kb on - strandat 4943.791 kb on - strandat 4944.022 kb on + strand, within Psyr_4157at 4944.022 kb on + strand, within Psyr_4157at 4944.022 kb on + strand, within Psyr_4157at 4944.022 kb on + strand, within Psyr_4157at 4944.022 kb on + strand, within Psyr_4157at 4944.023 kb on - strand, within Psyr_4157at 4944.023 kb on - strand, within Psyr_4157at 4944.023 kb on - strand, within Psyr_4157at 4944.023 kb on - strand, within Psyr_4157at 4944.142 kb on + strand, within Psyr_4157at 4944.143 kb on - strand, within Psyr_4157at 4944.143 kb on - strand, within Psyr_4157at 4944.167 kb on - strand, within Psyr_4157at 4944.232 kb on + strand, within Psyr_4157at 4944.232 kb on + strand, within Psyr_4157at 4944.232 kb on + strand, within Psyr_4157at 4944.232 kb on + strand, within Psyr_4157at 4944.232 kb on + strand, within Psyr_4157at 4944.233 kb on - strand, within Psyr_4157at 4944.233 kb on - strand, within Psyr_4157at 4944.233 kb on - strand, within Psyr_4157at 4944.233 kb on - strand, within Psyr_4157at 4944.233 kb on - strand, within Psyr_4157at 4944.233 kb on - strand, within Psyr_4157at 4944.409 kb on - strand, within Psyr_4157at 4944.673 kb on + strandat 4944.673 kb on + strandat 4944.674 kb on - strandat 4944.674 kb on - strandat 4944.674 kb on - strandat 4944.674 kb on - strandat 4944.674 kb on - strandat 4944.754 kb on + strandat 4944.754 kb on + strandat 4944.754 kb on + strandat 4944.754 kb on + strandat 4944.754 kb on + strandat 4944.755 kb on - strandat 4944.985 kb on + strandat 4944.985 kb on + strandat 4944.985 kb on + strandat 4944.985 kb on + strandat 4944.985 kb on + strandat 4944.985 kb on + strandat 4944.985 kb on + strandat 4944.986 kb on - strandat 4944.986 kb on - strandat 4944.986 kb on - strandat 4944.986 kb on - strandat 4944.986 kb on - strandat 4945.027 kb on + strandat 4945.028 kb on - strandat 4945.048 kb on - strandat 4945.383 kb on - strand, within Psyr_4158at 4945.594 kb on + strand, within Psyr_4158at 4945.594 kb on + strand, within Psyr_4158at 4945.813 kb on + strand, within Psyr_4158at 4945.988 kb on - strand, within Psyr_4158at 4945.988 kb on - strand, within Psyr_4158at 4946.115 kb on + strand, within Psyr_4158at 4946.159 kb on - strand, within Psyr_4158at 4946.595 kb on - strand, within Psyr_4158at 4946.642 kb on + strand, within Psyr_4158at 4946.642 kb on + strand, within Psyr_4158at 4946.643 kb on - strand, within Psyr_4158at 4946.643 kb on - strand, within Psyr_4158at 4946.703 kb on + strand, within Psyr_4158at 4946.703 kb on + strand, within Psyr_4158at 4946.703 kb on + strand, within Psyr_4158at 4946.703 kb on + strand, within Psyr_4158at 4946.703 kb on + strand, within Psyr_4158at 4946.704 kb on - strand, within Psyr_4158at 4946.704 kb on - strand, within Psyr_4158at 4946.704 kb on - strand, within Psyr_4158at 4946.722 kb on + strand, within Psyr_4158at 4946.723 kb on - strand, within Psyr_4158at 4946.723 kb on - strand, within Psyr_4158at 4946.723 kb on - strand, within Psyr_4158at 4946.938 kb on + strand, within Psyr_4158at 4946.939 kb on - strand, within Psyr_4158at 4946.939 kb on - strand, within Psyr_4158at 4946.939 kb on - strand, within Psyr_4158at 4946.951 kb on - strand, within Psyr_4158at 4946.951 kb on - strand, within Psyr_4158at 4946.992 kb on + strand, within Psyr_4158at 4946.992 kb on + strand, within Psyr_4158at 4946.992 kb on + strand, within Psyr_4158at 4946.993 kb on - strand, within Psyr_4158at 4946.993 kb on - strand, within Psyr_4158at 4946.993 kb on - strand, within Psyr_4158at 4947.351 kb on + strand, within Psyr_4158at 4947.351 kb on + strand, within Psyr_4158at 4947.352 kb on - strand, within Psyr_4158at 4947.352 kb on - strand, within Psyr_4158at 4947.352 kb on - strand, within Psyr_4158at 4947.352 kb on - strand, within Psyr_4158at 4947.352 kb on - strand, within Psyr_4158at 4947.655 kb on + strand, within Psyr_4158at 4947.656 kb on - strand, within Psyr_4158at 4947.823 kb on + strand, within Psyr_4158at 4947.823 kb on + strand, within Psyr_4158at 4947.824 kb on - strand, within Psyr_4158at 4947.824 kb on - strand, within Psyr_4158at 4947.935 kb on - strand, within Psyr_4158at 4947.960 kb on + strand, within Psyr_4158at 4947.960 kb on + strand, within Psyr_4158at 4947.960 kb on + strand, within Psyr_4158at 4947.960 kb on + strand, within Psyr_4158at 4947.960 kb on + strand, within Psyr_4158at 4947.961 kb on - strand, within Psyr_4158at 4947.961 kb on - strand, within Psyr_4158at 4947.961 kb on - strand, within Psyr_4158at 4947.961 kb on - strand, within Psyr_4158at 4947.961 kb on - strand, within Psyr_4158at 4947.961 kb on - strand, within Psyr_4158at 4947.964 kb on + strand, within Psyr_4158at 4947.964 kb on + strand, within Psyr_4158at 4947.964 kb on + strand, within Psyr_4158at 4947.964 kb on + strand, within Psyr_4158at 4947.964 kb on + strand, within Psyr_4158at 4947.964 kb on + strand, within Psyr_4158at 4947.964 kb on + strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4948.222 kb on - strandat 4948.304 kb on + strandat 4948.304 kb on + strandat 4948.305 kb on - strandat 4948.305 kb on - strandat 4948.417 kb on + strandat 4948.417 kb on + strandat 4948.418 kb on - strandat 4948.418 kb on - strandat 4948.584 kb on - strandat 4948.584 kb on - strandat 4948.629 kb on + strandat 4948.630 kb on - strandat 4948.630 kb on - strandat 4948.660 kb on + strandat 4948.702 kb on + strandat 4948.703 kb on - strandat 4948.703 kb on - strandat 4948.717 kb on + strandat 4948.717 kb on + strandat 4948.717 kb on + strandat 4948.718 kb on - strandat 4948.718 kb on - strandat 4948.718 kb on - strandat 4948.718 kb on - strandat 4948.754 kb on + strandat 4948.754 kb on + strandat 4948.849 kb on + strand, within Psyr_4159at 4948.850 kb on - strand, within Psyr_4159at 4948.850 kb on - strand, within Psyr_4159at 4948.889 kb on - strand, within Psyr_4159at 4949.344 kb on + strand, within Psyr_4159

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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4,943,790 + +0.1
4,943,790 + +0.0
4,943,790 + -0.6
4,943,790 + +0.5
4,943,790 + +0.5
4,943,790 + +0.2
4,943,791 - +0.1
4,943,791 - -0.4
4,944,022 + Psyr_4157 0.27 +0.7
4,944,022 + Psyr_4157 0.27 +0.1
4,944,022 + Psyr_4157 0.27 +2.0
4,944,022 + Psyr_4157 0.27 +0.7
4,944,022 + Psyr_4157 0.27 -0.2
4,944,023 - Psyr_4157 0.27 -1.7
4,944,023 - Psyr_4157 0.27 +0.7
4,944,023 - Psyr_4157 0.27 +1.9
4,944,023 - Psyr_4157 0.27 -0.7
4,944,142 + Psyr_4157 0.41 +0.5
4,944,143 - Psyr_4157 0.41 +0.5
4,944,143 - Psyr_4157 0.41 +0.7
4,944,167 - Psyr_4157 0.44 -1.3
4,944,232 + Psyr_4157 0.52 -0.4
4,944,232 + Psyr_4157 0.52 +0.5
4,944,232 + Psyr_4157 0.52 +1.4
4,944,232 + Psyr_4157 0.52 -0.5
4,944,232 + Psyr_4157 0.52 +1.3
4,944,233 - Psyr_4157 0.52 +0.6
4,944,233 - Psyr_4157 0.52 +0.1
4,944,233 - Psyr_4157 0.52 +0.2
4,944,233 - Psyr_4157 0.52 +0.8
4,944,233 - Psyr_4157 0.52 +2.1
4,944,233 - Psyr_4157 0.52 +1.1
4,944,409 - Psyr_4157 0.73 +0.0
4,944,673 + +0.9
4,944,673 + +0.5
4,944,674 - +1.1
4,944,674 - +0.0
4,944,674 - +0.0
4,944,674 - +1.5
4,944,674 - -0.9
4,944,754 + +2.7
4,944,754 + -2.9
4,944,754 + -2.3
4,944,754 + +1.1
4,944,754 + -0.4
4,944,755 - -2.9
4,944,985 + -0.7
4,944,985 + +2.1
4,944,985 + +1.1
4,944,985 + -0.7
4,944,985 + -2.2
4,944,985 + +0.6
4,944,985 + -1.7
4,944,986 - -0.7
4,944,986 - -2.3
4,944,986 - -1.9
4,944,986 - -1.1
4,944,986 - -2.9
4,945,027 + +1.1
4,945,028 - -1.6
4,945,048 - -2.9
4,945,383 - Psyr_4158 0.18 -3.7
4,945,594 + Psyr_4158 0.24 -0.9
4,945,594 + Psyr_4158 0.24 -2.0
4,945,813 + Psyr_4158 0.30 -0.6
4,945,988 - Psyr_4158 0.34 -0.8
4,945,988 - Psyr_4158 0.34 +0.3
4,946,115 + Psyr_4158 0.37 -1.4
4,946,159 - Psyr_4158 0.39 +2.2
4,946,595 - Psyr_4158 0.50 -1.0
4,946,642 + Psyr_4158 0.51 +1.2
4,946,642 + Psyr_4158 0.51 -1.6
4,946,643 - Psyr_4158 0.51 +2.2
4,946,643 - Psyr_4158 0.51 -2.2
4,946,703 + Psyr_4158 0.53 -2.6
4,946,703 + Psyr_4158 0.53 -3.0
4,946,703 + Psyr_4158 0.53 +1.9
4,946,703 + Psyr_4158 0.53 +0.2
4,946,703 + Psyr_4158 0.53 -1.8
4,946,704 - Psyr_4158 0.53 -0.3
4,946,704 - Psyr_4158 0.53 -1.4
4,946,704 - Psyr_4158 0.53 -0.2
4,946,722 + Psyr_4158 0.53 -1.2
4,946,723 - Psyr_4158 0.53 -1.8
4,946,723 - Psyr_4158 0.53 -0.4
4,946,723 - Psyr_4158 0.53 -1.7
4,946,938 + Psyr_4158 0.59 -0.4
4,946,939 - Psyr_4158 0.59 -2.4
4,946,939 - Psyr_4158 0.59 +0.7
4,946,939 - Psyr_4158 0.59 -0.0
4,946,951 - Psyr_4158 0.59 -0.2
4,946,951 - Psyr_4158 0.59 -2.5
4,946,992 + Psyr_4158 0.60 +0.2
4,946,992 + Psyr_4158 0.60 -0.8
4,946,992 + Psyr_4158 0.60 -1.2
4,946,993 - Psyr_4158 0.60 -1.5
4,946,993 - Psyr_4158 0.60 -2.2
4,946,993 - Psyr_4158 0.60 +1.2
4,947,351 + Psyr_4158 0.70 -1.2
4,947,351 + Psyr_4158 0.70 +0.3
4,947,352 - Psyr_4158 0.70 -1.2
4,947,352 - Psyr_4158 0.70 -0.2
4,947,352 - Psyr_4158 0.70 -1.4
4,947,352 - Psyr_4158 0.70 +1.2
4,947,352 - Psyr_4158 0.70 -2.0
4,947,655 + Psyr_4158 0.78 -2.7
4,947,656 - Psyr_4158 0.78 +2.6
4,947,823 + Psyr_4158 0.82 -0.4
4,947,823 + Psyr_4158 0.82 -1.2
4,947,824 - Psyr_4158 0.82 -1.8
4,947,824 - Psyr_4158 0.82 -1.4
4,947,935 - Psyr_4158 0.85 -2.0
4,947,960 + Psyr_4158 0.86 -1.4
4,947,960 + Psyr_4158 0.86 -1.7
4,947,960 + Psyr_4158 0.86 -0.4
4,947,960 + Psyr_4158 0.86 +0.0
4,947,960 + Psyr_4158 0.86 -2.4
4,947,961 - Psyr_4158 0.86 -0.7
4,947,961 - Psyr_4158 0.86 -1.4
4,947,961 - Psyr_4158 0.86 -0.6
4,947,961 - Psyr_4158 0.86 +1.9
4,947,961 - Psyr_4158 0.86 -0.6
4,947,961 - Psyr_4158 0.86 -2.6
4,947,964 + Psyr_4158 0.86 -2.2
4,947,964 + Psyr_4158 0.86 -0.1
4,947,964 + Psyr_4158 0.86 +0.2
4,947,964 + Psyr_4158 0.86 +0.3
4,947,964 + Psyr_4158 0.86 +0.2
4,947,964 + Psyr_4158 0.86 +1.2
4,947,964 + Psyr_4158 0.86 -1.2
4,947,965 - Psyr_4158 0.86 +0.6
4,947,965 - Psyr_4158 0.86 +2.5
4,947,965 - Psyr_4158 0.86 -0.3
4,947,965 - Psyr_4158 0.86 -3.2
4,947,965 - Psyr_4158 0.86 -0.3
4,947,965 - Psyr_4158 0.86 -2.4
4,947,965 - Psyr_4158 0.86 -2.8
4,947,965 - Psyr_4158 0.86 +0.2
4,947,965 - Psyr_4158 0.86 -2.4
4,947,965 - Psyr_4158 0.86 +0.2
4,947,965 - Psyr_4158 0.86 +3.2
4,947,965 - Psyr_4158 0.86 +1.2
4,948,222 - +1.2
4,948,304 + +0.9
4,948,304 + -1.0
4,948,305 - -0.8
4,948,305 - -0.1
4,948,417 + +1.9
4,948,417 + -1.1
4,948,418 - -2.3
4,948,418 - -2.0
4,948,584 - +0.7
4,948,584 - +0.6
4,948,629 + -2.8
4,948,630 - -1.0
4,948,630 - -0.6
4,948,660 + +2.2
4,948,702 + -1.0
4,948,703 - -0.1
4,948,703 - -0.5
4,948,717 + -0.6
4,948,717 + +3.2
4,948,717 + -1.2
4,948,718 - -1.0
4,948,718 - -1.8
4,948,718 - -1.0
4,948,718 - -0.5
4,948,754 + -0.6
4,948,754 + -0.2
4,948,849 + Psyr_4159 0.11 -0.7
4,948,850 - Psyr_4159 0.11 +3.5
4,948,850 - Psyr_4159 0.11 +0.5
4,948,889 - Psyr_4159 0.14 -1.8
4,949,344 + Psyr_4159 0.45 -1.4

Or see this region's nucleotide sequence