Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4078 and Psyr_4079 are separated by 28 nucleotides Psyr_4079 and Psyr_4080 are separated by 312 nucleotides
Psyr_4078: Psyr_4078 - AmpG-related permease, at 4,860,930 to 4,862,480
_4078
Psyr_4079: Psyr_4079 - conserved hypothetical protein, at 4,862,509 to 4,862,841
_4079
Psyr_4080: Psyr_4080 - Rhs element Vgr protein, at 4,863,154 to 4,865,715
_4080
Position (kb) 4862
4863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4861.686 kb on + strand, within Psyr_4078 at 4861.686 kb on + strand, within Psyr_4078 at 4861.686 kb on + strand, within Psyr_4078 at 4861.686 kb on + strand, within Psyr_4078 at 4861.687 kb on - strand, within Psyr_4078 at 4861.777 kb on - strand, within Psyr_4078 at 4861.909 kb on - strand, within Psyr_4078 at 4861.953 kb on + strand, within Psyr_4078 at 4861.954 kb on - strand, within Psyr_4078 at 4861.954 kb on - strand, within Psyr_4078 at 4861.971 kb on - strand, within Psyr_4078 at 4862.168 kb on + strand, within Psyr_4078 at 4862.224 kb on - strand, within Psyr_4078 at 4862.265 kb on + strand, within Psyr_4078 at 4862.266 kb on - strand, within Psyr_4078 at 4862.316 kb on + strand, within Psyr_4078 at 4862.425 kb on + strand at 4862.425 kb on + strand at 4862.426 kb on - strand at 4862.426 kb on - strand at 4862.426 kb on - strand at 4862.609 kb on - strand, within Psyr_4079 at 4862.609 kb on - strand, within Psyr_4079 at 4862.609 kb on - strand, within Psyr_4079 at 4862.713 kb on + strand, within Psyr_4079 at 4862.714 kb on - strand, within Psyr_4079 at 4862.727 kb on - strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.753 kb on + strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.754 kb on - strand, within Psyr_4079 at 4862.757 kb on + strand, within Psyr_4079 at 4862.757 kb on + strand, within Psyr_4079 at 4862.757 kb on + strand, within Psyr_4079 at 4862.757 kb on + strand, within Psyr_4079 at 4862.757 kb on + strand, within Psyr_4079 at 4862.757 kb on + strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.758 kb on - strand, within Psyr_4079 at 4862.809 kb on - strand at 4862.815 kb on - strand at 4862.826 kb on + strand at 4862.826 kb on + strand at 4862.826 kb on + strand at 4862.826 kb on + strand at 4862.826 kb on + strand at 4862.827 kb on - strand at 4862.827 kb on - strand at 4862.827 kb on - strand at 4862.827 kb on - strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.828 kb on + strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.829 kb on - strand at 4862.889 kb on + strand at 4862.890 kb on - strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.891 kb on + strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.892 kb on - strand at 4862.907 kb on + strand at 4862.965 kb on - strand at 4863.002 kb on + strand at 4863.002 kb on + strand at 4863.003 kb on - strand at 4863.003 kb on - strand at 4863.003 kb on - strand at 4863.003 kb on - strand at 4863.023 kb on + strand at 4863.024 kb on - strand at 4863.054 kb on + strand at 4863.080 kb on + strand at 4863.081 kb on - strand at 4863.081 kb on - strand at 4863.081 kb on - strand at 4863.083 kb on - strand at 4863.083 kb on - strand at 4863.083 kb on - strand at 4863.083 kb on - strand at 4863.083 kb on - strand at 4863.083 kb on - strand at 4863.100 kb on + strand at 4863.100 kb on + strand at 4863.100 kb on + strand at 4863.100 kb on + strand at 4863.100 kb on + strand at 4863.100 kb on + strand at 4863.101 kb on - strand at 4863.101 kb on - strand at 4863.101 kb on - strand at 4863.101 kb on - strand at 4863.101 kb on - strand at 4863.103 kb on - strand at 4863.137 kb on + strand at 4863.138 kb on - strand at 4863.139 kb on + strand at 4863.139 kb on + strand at 4863.139 kb on + strand at 4863.139 kb on + strand at 4863.139 kb on + strand at 4863.140 kb on - strand at 4863.140 kb on - strand at 4863.140 kb on - strand at 4863.140 kb on - strand at 4863.140 kb on - strand at 4863.141 kb on + strand at 4863.142 kb on - strand at 4863.142 kb on - strand at 4863.158 kb on + strand at 4863.159 kb on - strand at 4863.167 kb on + strand at 4863.365 kb on + strand at 4863.365 kb on + strand at 4863.366 kb on - strand at 4863.366 kb on - strand at 4863.392 kb on - strand at 4863.392 kb on - strand at 4863.403 kb on + strand at 4863.403 kb on + strand at 4863.403 kb on + strand at 4863.403 kb on + strand at 4863.403 kb on + strand at 4863.403 kb on + strand at 4863.404 kb on - strand at 4863.404 kb on - strand at 4863.404 kb on - strand at 4863.404 kb on - strand at 4863.404 kb on - strand at 4863.404 kb on - strand at 4863.405 kb on + strand at 4863.405 kb on + strand at 4863.405 kb on + strand at 4863.451 kb on + strand, within Psyr_4080 at 4863.509 kb on + strand, within Psyr_4080 at 4863.509 kb on + strand, within Psyr_4080 at 4863.510 kb on - strand, within Psyr_4080 at 4863.510 kb on - strand, within Psyr_4080 at 4863.549 kb on - strand, within Psyr_4080 at 4863.549 kb on - strand, within Psyr_4080 at 4863.559 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.616 kb on + strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.617 kb on - strand, within Psyr_4080 at 4863.653 kb on + strand, within Psyr_4080 at 4863.654 kb on - strand, within Psyr_4080 at 4863.654 kb on - strand, within Psyr_4080 at 4863.654 kb on - strand, within Psyr_4080 at 4863.688 kb on + strand, within Psyr_4080 at 4863.688 kb on + strand, within Psyr_4080 at 4863.688 kb on + strand, within Psyr_4080 at 4863.688 kb on + strand, within Psyr_4080 at 4863.689 kb on - strand, within Psyr_4080 at 4863.689 kb on - strand, within Psyr_4080 at 4863.689 kb on - strand, within Psyr_4080 at 4863.689 kb on - strand, within Psyr_4080
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 4,861,686 + Psyr_4078 0.49 -1.5 4,861,686 + Psyr_4078 0.49 -2.6 4,861,686 + Psyr_4078 0.49 -2.3 4,861,686 + Psyr_4078 0.49 -1.2 4,861,687 - Psyr_4078 0.49 -0.1 4,861,777 - Psyr_4078 0.55 -2.1 4,861,909 - Psyr_4078 0.63 -3.1 4,861,953 + Psyr_4078 0.66 -1.6 4,861,954 - Psyr_4078 0.66 +2.1 4,861,954 - Psyr_4078 0.66 -1.8 4,861,971 - Psyr_4078 0.67 +1.1 4,862,168 + Psyr_4078 0.80 +3.7 4,862,224 - Psyr_4078 0.83 -0.9 4,862,265 + Psyr_4078 0.86 +2.4 4,862,266 - Psyr_4078 0.86 -0.9 4,862,316 + Psyr_4078 0.89 +0.1 4,862,425 + +0.9 4,862,425 + +2.1 4,862,426 - -2.5 4,862,426 - -0.3 4,862,426 - +1.3 4,862,609 - Psyr_4079 0.30 +0.2 4,862,609 - Psyr_4079 0.30 -1.6 4,862,609 - Psyr_4079 0.30 +2.0 4,862,713 + Psyr_4079 0.61 -0.9 4,862,714 - Psyr_4079 0.62 -1.5 4,862,727 - Psyr_4079 0.65 -0.9 4,862,753 + Psyr_4079 0.73 +1.3 4,862,753 + Psyr_4079 0.73 -1.8 4,862,753 + Psyr_4079 0.73 -0.0 4,862,753 + Psyr_4079 0.73 +2.8 4,862,753 + Psyr_4079 0.73 -2.2 4,862,753 + +1.1 4,862,753 + Psyr_4079 0.73 +0.9 4,862,753 + Psyr_4079 0.73 +1.6 4,862,753 + Psyr_4079 0.73 +1.3 4,862,753 + Psyr_4079 0.73 +1.1 4,862,754 - Psyr_4079 0.74 -0.1 4,862,754 - Psyr_4079 0.74 -0.2 4,862,754 - Psyr_4079 0.74 +0.5 4,862,754 - Psyr_4079 0.74 +1.7 4,862,754 - Psyr_4079 0.74 +2.0 4,862,754 - Psyr_4079 0.74 -1.3 4,862,754 - Psyr_4079 0.74 -1.7 4,862,754 - Psyr_4079 0.74 +0.9 4,862,754 - Psyr_4079 0.74 -1.7 4,862,754 - Psyr_4079 0.74 -0.7 4,862,757 + Psyr_4079 0.74 +1.1 4,862,757 + Psyr_4079 0.74 +1.1 4,862,757 + Psyr_4079 0.74 +1.1 4,862,757 + Psyr_4079 0.74 +0.3 4,862,757 + Psyr_4079 0.74 -1.1 4,862,757 + Psyr_4079 0.74 +2.1 4,862,758 - Psyr_4079 0.75 +0.3 4,862,758 - Psyr_4079 0.75 +2.1 4,862,758 - Psyr_4079 0.75 -0.2 4,862,758 - Psyr_4079 0.75 +1.0 4,862,758 - Psyr_4079 0.75 -3.0 4,862,758 - Psyr_4079 0.75 -0.3 4,862,758 - Psyr_4079 0.75 +3.7 4,862,758 - Psyr_4079 0.75 +0.1 4,862,758 - Psyr_4079 0.75 +1.0 4,862,809 - -0.5 4,862,815 - -1.0 4,862,826 + -1.9 4,862,826 + +1.0 4,862,826 + +1.2 4,862,826 + +1.5 4,862,826 + -1.4 4,862,827 - -1.5 4,862,827 - +0.9 4,862,827 - +1.1 4,862,827 - +1.7 4,862,828 + +0.3 4,862,828 + -2.3 4,862,828 + -0.2 4,862,828 + -0.7 4,862,828 + +0.1 4,862,828 + +1.6 4,862,828 + -1.7 4,862,828 + -0.4 4,862,828 + +1.0 4,862,828 + -0.5 4,862,828 + +3.6 4,862,829 - -0.1 4,862,829 - +0.1 4,862,829 - +0.7 4,862,829 - +0.8 4,862,829 - -1.5 4,862,829 - -1.3 4,862,829 - +1.3 4,862,829 - +3.1 4,862,829 - -0.0 4,862,829 - -0.5 4,862,889 + -3.3 4,862,890 - +1.1 4,862,891 + +1.5 4,862,891 + -0.0 4,862,891 + +0.0 4,862,891 + -0.1 4,862,891 + +0.9 4,862,891 + +2.2 4,862,891 + -0.8 4,862,891 + -1.3 4,862,891 + -3.0 4,862,891 + -0.8 4,862,892 - +1.8 4,862,892 - -0.6 4,862,892 - +0.9 4,862,892 - -1.3 4,862,892 - -1.2 4,862,892 - +0.1 4,862,892 - -2.9 4,862,892 - -0.6 4,862,892 - -0.5 4,862,907 + -0.2 4,862,965 - +0.1 4,863,002 + -0.6 4,863,002 + +0.4 4,863,003 - +0.5 4,863,003 - +0.1 4,863,003 - -0.5 4,863,003 - +0.4 4,863,023 + -0.5 4,863,024 - -1.6 4,863,054 + -0.1 4,863,080 + -2.2 4,863,081 - -0.7 4,863,081 - -0.8 4,863,081 - +1.9 4,863,083 - -0.1 4,863,083 - -1.8 4,863,083 - +0.6 4,863,083 - +0.4 4,863,083 - -0.7 4,863,083 - +0.3 4,863,100 + +0.4 4,863,100 + -1.3 4,863,100 + +2.1 4,863,100 + +0.5 4,863,100 + +0.2 4,863,100 + -0.1 4,863,101 - +1.1 4,863,101 - +0.7 4,863,101 - +0.3 4,863,101 - -1.1 4,863,101 - +1.1 4,863,103 - +1.1 4,863,137 + -1.5 4,863,138 - +0.3 4,863,139 + -0.5 4,863,139 + -0.6 4,863,139 + -0.1 4,863,139 + -2.3 4,863,139 + +0.4 4,863,140 - +0.5 4,863,140 - +0.3 4,863,140 - -1.0 4,863,140 - -1.9 4,863,140 - -0.5 4,863,141 + +1.7 4,863,142 - +0.6 4,863,142 - -0.5 4,863,158 + +1.2 4,863,159 - +0.4 4,863,167 + +0.2 4,863,365 + -0.9 4,863,365 + +1.9 4,863,366 - -0.7 4,863,366 - -1.3 4,863,392 - +1.8 4,863,392 - +1.2 4,863,403 + +0.8 4,863,403 + +1.2 4,863,403 + -0.1 4,863,403 + -0.2 4,863,403 + -1.9 4,863,403 + +0.6 4,863,404 - +0.4 4,863,404 - +0.3 4,863,404 - +0.2 4,863,404 - +1.0 4,863,404 - +1.0 4,863,404 - +0.7 4,863,405 + +2.3 4,863,405 + -1.1 4,863,405 + -0.6 4,863,451 + Psyr_4080 0.12 +1.2 4,863,509 + Psyr_4080 0.14 +0.2 4,863,509 + Psyr_4080 0.14 +0.5 4,863,510 - Psyr_4080 0.14 +0.7 4,863,510 - Psyr_4080 0.14 -0.4 4,863,549 - Psyr_4080 0.15 -0.4 4,863,549 - Psyr_4080 0.15 -0.9 4,863,559 + Psyr_4080 0.16 -0.8 4,863,616 + Psyr_4080 0.18 +0.8 4,863,616 + Psyr_4080 0.18 -0.7 4,863,616 + Psyr_4080 0.18 -1.2 4,863,616 + Psyr_4080 0.18 -0.6 4,863,616 + Psyr_4080 0.18 +0.4 4,863,616 + Psyr_4080 0.18 -0.9 4,863,616 + Psyr_4080 0.18 -2.3 4,863,616 + Psyr_4080 0.18 -3.4 4,863,616 + Psyr_4080 0.18 -0.6 4,863,616 + Psyr_4080 0.18 -0.2 4,863,616 + Psyr_4080 0.18 -0.8 4,863,616 + Psyr_4080 0.18 +2.4 4,863,616 + Psyr_4080 0.18 +0.2 4,863,616 + Psyr_4080 0.18 +0.9 4,863,616 + Psyr_4080 0.18 +0.7 4,863,616 + Psyr_4080 0.18 +1.6 4,863,616 + Psyr_4080 0.18 +0.2 4,863,616 + Psyr_4080 0.18 +1.1 4,863,616 + Psyr_4080 0.18 -1.1 4,863,617 - Psyr_4080 0.18 -0.4 4,863,617 - Psyr_4080 0.18 -0.5 4,863,617 - Psyr_4080 0.18 +0.5 4,863,617 - Psyr_4080 0.18 +1.6 4,863,617 - Psyr_4080 0.18 +0.0 4,863,617 - Psyr_4080 0.18 -1.7 4,863,617 - Psyr_4080 0.18 -0.5 4,863,617 - Psyr_4080 0.18 +1.7 4,863,617 - Psyr_4080 0.18 +0.9 4,863,617 - Psyr_4080 0.18 +0.9 4,863,617 - Psyr_4080 0.18 +1.1 4,863,653 + Psyr_4080 0.19 -0.6 4,863,654 - Psyr_4080 0.20 -1.1 4,863,654 - Psyr_4080 0.20 +1.3 4,863,654 - Psyr_4080 0.20 +0.9 4,863,688 + Psyr_4080 0.21 +0.3 4,863,688 + Psyr_4080 0.21 -0.7 4,863,688 + Psyr_4080 0.21 +0.7 4,863,688 + Psyr_4080 0.21 -0.2 4,863,689 - Psyr_4080 0.21 +2.7 4,863,689 - Psyr_4080 0.21 -0.2 4,863,689 - Psyr_4080 0.21 -0.2 4,863,689 - Psyr_4080 0.21 +2.0
Or see this region's nucleotide sequence