Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4042 and Psyr_4043 are separated by 570 nucleotides Psyr_4043 and Psyr_4044 are separated by 40 nucleotides
Psyr_4042: Psyr_4042 - hypothetical protein, at 4,827,044 to 4,827,484
_4042
Psyr_4043: Psyr_4043 - hypothetical protein, at 4,828,055 to 4,828,288
_4043
Psyr_4044: Psyr_4044 - Phospholipase D/Transphosphatidylase, at 4,828,329 to 4,829,486
_4044
Position (kb) 4828
4829 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4827.067 kb on + strand at 4827.078 kb on + strand at 4827.107 kb on + strand, within Psyr_4042 at 4827.108 kb on - strand, within Psyr_4042 at 4827.108 kb on - strand, within Psyr_4042 at 4827.137 kb on + strand, within Psyr_4042 at 4827.137 kb on + strand, within Psyr_4042 at 4827.137 kb on + strand, within Psyr_4042 at 4827.137 kb on + strand, within Psyr_4042 at 4827.137 kb on + strand, within Psyr_4042 at 4827.137 kb on + strand, within Psyr_4042 at 4827.137 kb on + strand, within Psyr_4042 at 4827.138 kb on - strand, within Psyr_4042 at 4827.138 kb on - strand, within Psyr_4042 at 4827.138 kb on - strand, within Psyr_4042 at 4827.138 kb on - strand, within Psyr_4042 at 4827.138 kb on - strand, within Psyr_4042 at 4827.197 kb on + strand, within Psyr_4042 at 4827.199 kb on + strand, within Psyr_4042 at 4827.199 kb on + strand, within Psyr_4042 at 4827.199 kb on + strand, within Psyr_4042 at 4827.200 kb on - strand, within Psyr_4042 at 4827.203 kb on + strand, within Psyr_4042 at 4827.203 kb on + strand, within Psyr_4042 at 4827.210 kb on + strand, within Psyr_4042 at 4827.211 kb on - strand, within Psyr_4042 at 4827.250 kb on - strand, within Psyr_4042 at 4827.263 kb on + strand, within Psyr_4042 at 4827.263 kb on + strand, within Psyr_4042 at 4827.263 kb on + strand, within Psyr_4042 at 4827.263 kb on + strand, within Psyr_4042 at 4827.264 kb on - strand, within Psyr_4042 at 4827.264 kb on - strand, within Psyr_4042 at 4827.264 kb on - strand, within Psyr_4042 at 4827.266 kb on + strand, within Psyr_4042 at 4827.267 kb on - strand, within Psyr_4042 at 4827.267 kb on - strand, within Psyr_4042 at 4827.314 kb on + strand, within Psyr_4042 at 4827.366 kb on + strand, within Psyr_4042 at 4827.367 kb on - strand, within Psyr_4042 at 4827.398 kb on + strand, within Psyr_4042 at 4827.398 kb on + strand, within Psyr_4042 at 4827.398 kb on + strand, within Psyr_4042 at 4827.399 kb on - strand, within Psyr_4042 at 4827.399 kb on - strand, within Psyr_4042 at 4827.399 kb on - strand, within Psyr_4042 at 4827.399 kb on - strand, within Psyr_4042 at 4827.399 kb on - strand, within Psyr_4042 at 4827.454 kb on + strand at 4827.454 kb on + strand at 4827.455 kb on - strand at 4827.458 kb on + strand at 4827.458 kb on + strand at 4827.459 kb on - strand at 4827.459 kb on - strand at 4827.459 kb on - strand at 4827.459 kb on - strand at 4827.483 kb on - strand at 4827.531 kb on + strand at 4827.531 kb on + strand at 4827.532 kb on - strand at 4827.540 kb on + strand at 4827.540 kb on + strand at 4827.563 kb on + strand at 4827.563 kb on + strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.567 kb on + strand at 4827.567 kb on + strand at 4827.567 kb on + strand at 4827.567 kb on + strand at 4827.567 kb on + strand at 4827.568 kb on - strand at 4827.568 kb on - strand at 4827.568 kb on - strand at 4827.638 kb on + strand at 4827.638 kb on + strand at 4827.638 kb on + strand at 4827.638 kb on + strand at 4827.638 kb on + strand at 4827.639 kb on - strand at 4827.639 kb on - strand at 4827.639 kb on - strand at 4827.639 kb on - strand at 4827.639 kb on - strand at 4827.685 kb on + strand at 4827.735 kb on + strand at 4827.736 kb on - strand at 4827.736 kb on - strand at 4827.736 kb on - strand at 4827.736 kb on - strand at 4827.857 kb on - strand at 4827.857 kb on - strand at 4827.976 kb on - strand at 4828.136 kb on + strand, within Psyr_4043 at 4828.136 kb on + strand, within Psyr_4043 at 4828.136 kb on + strand, within Psyr_4043 at 4828.136 kb on + strand, within Psyr_4043 at 4828.165 kb on + strand, within Psyr_4043 at 4828.175 kb on + strand, within Psyr_4043 at 4828.176 kb on - strand, within Psyr_4043 at 4828.334 kb on + strand at 4828.335 kb on - strand at 4828.335 kb on - strand at 4828.335 kb on - strand at 4828.335 kb on - strand at 4828.335 kb on - strand at 4828.675 kb on + strand, within Psyr_4044 at 4828.786 kb on + strand, within Psyr_4044 at 4828.786 kb on + strand, within Psyr_4044 at 4828.787 kb on - strand, within Psyr_4044 at 4828.787 kb on - strand, within Psyr_4044 at 4828.877 kb on - strand, within Psyr_4044 at 4829.155 kb on + strand, within Psyr_4044 at 4829.195 kb on - strand, within Psyr_4044
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 4,827,067 + -0.1 4,827,078 + +0.5 4,827,107 + Psyr_4042 0.14 +0.9 4,827,108 - Psyr_4042 0.15 +1.4 4,827,108 - Psyr_4042 0.15 -0.9 4,827,137 + Psyr_4042 0.21 -0.1 4,827,137 + Psyr_4042 0.21 +2.3 4,827,137 + Psyr_4042 0.21 -2.2 4,827,137 + Psyr_4042 0.21 -0.6 4,827,137 + Psyr_4042 0.21 +0.6 4,827,137 + Psyr_4042 0.21 +1.8 4,827,137 + Psyr_4042 0.21 +1.3 4,827,138 - Psyr_4042 0.21 -0.3 4,827,138 - Psyr_4042 0.21 -0.1 4,827,138 - Psyr_4042 0.21 -0.3 4,827,138 - Psyr_4042 0.21 -3.2 4,827,138 - Psyr_4042 0.21 +1.0 4,827,197 + Psyr_4042 0.35 -1.6 4,827,199 + Psyr_4042 0.35 -0.3 4,827,199 + Psyr_4042 0.35 -0.8 4,827,199 + Psyr_4042 0.35 +0.4 4,827,200 - Psyr_4042 0.35 +0.8 4,827,203 + Psyr_4042 0.36 +0.3 4,827,203 + Psyr_4042 0.36 +0.6 4,827,210 + Psyr_4042 0.38 -0.9 4,827,211 - Psyr_4042 0.38 +1.5 4,827,250 - Psyr_4042 0.47 -0.3 4,827,263 + Psyr_4042 0.50 +0.3 4,827,263 + Psyr_4042 0.50 +0.4 4,827,263 + Psyr_4042 0.50 -0.1 4,827,263 + Psyr_4042 0.50 -1.6 4,827,264 - Psyr_4042 0.50 -0.9 4,827,264 - Psyr_4042 0.50 -1.1 4,827,264 - Psyr_4042 0.50 +2.7 4,827,266 + Psyr_4042 0.50 -1.7 4,827,267 - Psyr_4042 0.51 +0.4 4,827,267 - Psyr_4042 0.51 -0.3 4,827,314 + Psyr_4042 0.61 +1.0 4,827,366 + Psyr_4042 0.73 -1.9 4,827,367 - Psyr_4042 0.73 -0.7 4,827,398 + Psyr_4042 0.80 -0.9 4,827,398 + Psyr_4042 0.80 -0.2 4,827,398 + Psyr_4042 0.80 -0.4 4,827,399 - Psyr_4042 0.80 +1.1 4,827,399 - Psyr_4042 0.80 -1.6 4,827,399 - Psyr_4042 0.80 +1.2 4,827,399 - Psyr_4042 0.80 -1.7 4,827,399 - Psyr_4042 0.80 -1.9 4,827,454 + -1.4 4,827,454 + -0.4 4,827,455 - -1.6 4,827,458 + +0.2 4,827,458 + -0.2 4,827,459 - -2.5 4,827,459 - -1.2 4,827,459 - -0.9 4,827,459 - -3.1 4,827,483 - +0.8 4,827,531 + +0.0 4,827,531 + -1.2 4,827,532 - +0.3 4,827,540 + -1.4 4,827,540 + +0.1 4,827,563 + +0.5 4,827,563 + +2.1 4,827,564 - +2.3 4,827,564 - -2.5 4,827,564 - -2.8 4,827,564 - +2.1 4,827,564 - +2.0 4,827,564 - +0.9 4,827,564 - -0.2 4,827,564 - -1.2 4,827,567 + -0.8 4,827,567 + -0.5 4,827,567 + -0.2 4,827,567 + +0.7 4,827,567 + +0.3 4,827,568 - -0.3 4,827,568 - -2.8 4,827,568 - +0.1 4,827,638 + -0.1 4,827,638 + -0.0 4,827,638 + -2.1 4,827,638 + +0.1 4,827,638 + -0.9 4,827,639 - +0.5 4,827,639 - +1.1 4,827,639 - -0.8 4,827,639 - +1.5 4,827,639 - +1.1 4,827,685 + -0.6 4,827,735 + -0.0 4,827,736 - +0.3 4,827,736 - -0.9 4,827,736 - -1.0 4,827,736 - -0.8 4,827,857 - +0.5 4,827,857 - -0.6 4,827,976 - -3.0 4,828,136 + Psyr_4043 0.35 -0.9 4,828,136 + Psyr_4043 0.35 +0.3 4,828,136 + Psyr_4043 0.35 +3.3 4,828,136 + Psyr_4043 0.35 -2.8 4,828,165 + Psyr_4043 0.47 -3.4 4,828,175 + Psyr_4043 0.51 -1.1 4,828,176 - Psyr_4043 0.52 -0.8 4,828,334 + -1.5 4,828,335 - +0.4 4,828,335 - -0.1 4,828,335 - +0.6 4,828,335 - +0.5 4,828,335 - -1.9 4,828,675 + Psyr_4044 0.30 -1.1 4,828,786 + Psyr_4044 0.39 +0.8 4,828,786 + Psyr_4044 0.39 -0.1 4,828,787 - Psyr_4044 0.40 -1.7 4,828,787 - Psyr_4044 0.40 +0.5 4,828,877 - Psyr_4044 0.47 +0.7 4,829,155 + Psyr_4044 0.71 +1.1 4,829,195 - Psyr_4044 0.75 +0.7
Or see this region's nucleotide sequence