Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4009 and Psyr_4010 are separated by 63 nucleotides Psyr_4010 and Psyr_4011 are separated by 211 nucleotides
Psyr_4009: Psyr_4009 - RND efflux system, outer membrane lipoprotein, NodT, at 4,775,378 to 4,776,838
_4009
Psyr_4010: Psyr_4010 - Citrate-proton symport, at 4,776,902 to 4,778,203
_4010
Psyr_4011: Psyr_4011 - Thiolase, at 4,778,415 to 4,779,614
_4011
Position (kb) 4776
4777
4778
4779 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4775.918 kb on + strand, within Psyr_4009 at 4775.918 kb on + strand, within Psyr_4009 at 4775.918 kb on + strand, within Psyr_4009 at 4775.918 kb on + strand, within Psyr_4009 at 4775.918 kb on + strand, within Psyr_4009 at 4775.918 kb on + strand, within Psyr_4009 at 4775.919 kb on - strand, within Psyr_4009 at 4775.919 kb on - strand, within Psyr_4009 at 4775.919 kb on - strand, within Psyr_4009 at 4775.919 kb on - strand, within Psyr_4009 at 4775.919 kb on - strand, within Psyr_4009 at 4775.919 kb on - strand, within Psyr_4009 at 4776.498 kb on - strand, within Psyr_4009 at 4776.560 kb on + strand, within Psyr_4009 at 4776.561 kb on - strand, within Psyr_4009 at 4776.561 kb on - strand, within Psyr_4009 at 4776.561 kb on - strand, within Psyr_4009 at 4776.561 kb on - strand, within Psyr_4009 at 4776.612 kb on - strand, within Psyr_4009 at 4776.612 kb on - strand, within Psyr_4009 at 4776.612 kb on - strand, within Psyr_4009 at 4776.612 kb on - strand, within Psyr_4009 at 4776.612 kb on - strand, within Psyr_4009 at 4776.752 kb on + strand at 4776.752 kb on + strand at 4776.752 kb on + strand at 4776.752 kb on + strand at 4776.753 kb on - strand at 4776.753 kb on - strand at 4776.753 kb on - strand at 4776.921 kb on + strand at 4776.921 kb on + strand at 4776.922 kb on - strand at 4776.922 kb on - strand at 4776.922 kb on - strand at 4776.922 kb on - strand at 4776.922 kb on - strand at 4776.984 kb on + strand at 4776.985 kb on - strand at 4776.990 kb on + strand at 4776.991 kb on - strand at 4776.991 kb on - strand at 4777.075 kb on - strand, within Psyr_4010 at 4777.149 kb on + strand, within Psyr_4010 at 4777.149 kb on + strand, within Psyr_4010 at 4777.150 kb on - strand, within Psyr_4010 at 4777.240 kb on + strand, within Psyr_4010 at 4777.240 kb on + strand, within Psyr_4010 at 4777.240 kb on + strand, within Psyr_4010 at 4777.241 kb on - strand, within Psyr_4010 at 4777.241 kb on - strand, within Psyr_4010 at 4777.241 kb on - strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.332 kb on + strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.333 kb on - strand, within Psyr_4010 at 4777.334 kb on + strand, within Psyr_4010 at 4777.334 kb on + strand, within Psyr_4010 at 4777.334 kb on + strand, within Psyr_4010 at 4777.334 kb on + strand, within Psyr_4010 at 4777.335 kb on - strand, within Psyr_4010 at 4777.335 kb on - strand, within Psyr_4010 at 4777.335 kb on - strand, within Psyr_4010 at 4777.335 kb on - strand, within Psyr_4010 at 4777.335 kb on - strand, within Psyr_4010 at 4777.359 kb on + strand, within Psyr_4010 at 4777.359 kb on + strand, within Psyr_4010 at 4777.359 kb on + strand, within Psyr_4010 at 4777.359 kb on + strand, within Psyr_4010 at 4777.359 kb on + strand, within Psyr_4010 at 4777.359 kb on + strand, within Psyr_4010 at 4777.359 kb on + strand, within Psyr_4010 at 4777.360 kb on - strand, within Psyr_4010 at 4777.360 kb on - strand, within Psyr_4010 at 4777.360 kb on - strand, within Psyr_4010 at 4777.360 kb on - strand, within Psyr_4010 at 4777.360 kb on - strand, within Psyr_4010 at 4777.401 kb on + strand, within Psyr_4010 at 4777.401 kb on + strand, within Psyr_4010 at 4777.401 kb on + strand, within Psyr_4010 at 4777.402 kb on - strand, within Psyr_4010 at 4777.413 kb on + strand, within Psyr_4010 at 4777.413 kb on + strand, within Psyr_4010 at 4777.413 kb on + strand, within Psyr_4010 at 4777.413 kb on + strand, within Psyr_4010 at 4777.413 kb on + strand, within Psyr_4010 at 4777.413 kb on + strand, within Psyr_4010 at 4777.413 kb on + strand, within Psyr_4010 at 4777.413 kb on + strand, within Psyr_4010 at 4777.413 kb on + strand, within Psyr_4010 at 4777.414 kb on - strand, within Psyr_4010 at 4777.414 kb on - strand, within Psyr_4010 at 4777.414 kb on - strand, within Psyr_4010 at 4777.414 kb on - strand, within Psyr_4010 at 4777.414 kb on - strand, within Psyr_4010 at 4777.414 kb on - strand, within Psyr_4010 at 4777.414 kb on - strand, within Psyr_4010 at 4777.414 kb on - strand, within Psyr_4010 at 4777.428 kb on + strand, within Psyr_4010 at 4777.429 kb on - strand, within Psyr_4010 at 4777.713 kb on + strand, within Psyr_4010 at 4777.714 kb on - strand, within Psyr_4010 at 4777.728 kb on + strand, within Psyr_4010 at 4777.729 kb on - strand, within Psyr_4010 at 4777.729 kb on - strand, within Psyr_4010 at 4777.729 kb on - strand, within Psyr_4010 at 4777.729 kb on - strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.786 kb on - strand, within Psyr_4010 at 4777.863 kb on + strand, within Psyr_4010 at 4777.863 kb on + strand, within Psyr_4010 at 4777.863 kb on + strand, within Psyr_4010 at 4777.864 kb on - strand, within Psyr_4010 at 4777.864 kb on - strand, within Psyr_4010 at 4777.864 kb on - strand, within Psyr_4010 at 4778.070 kb on + strand, within Psyr_4010 at 4778.071 kb on - strand, within Psyr_4010 at 4778.088 kb on + strand at 4778.088 kb on + strand at 4778.088 kb on + strand at 4778.088 kb on + strand at 4778.088 kb on + strand at 4778.089 kb on - strand at 4778.089 kb on - strand at 4778.089 kb on - strand at 4778.092 kb on + strand at 4778.092 kb on + strand at 4778.092 kb on + strand at 4778.092 kb on + strand at 4778.092 kb on + strand at 4778.092 kb on + strand at 4778.093 kb on - strand at 4778.093 kb on - strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.175 kb on + strand at 4778.175 kb on + strand at 4778.175 kb on + strand at 4778.176 kb on - strand at 4778.176 kb on - strand at 4778.176 kb on - strand at 4778.176 kb on - strand at 4778.197 kb on + strand at 4778.197 kb on + strand at 4778.198 kb on - strand at 4778.198 kb on - strand at 4778.198 kb on - strand at 4778.204 kb on + strand at 4778.205 kb on - strand at 4778.230 kb on - strand at 4778.416 kb on + strand at 4778.706 kb on - strand, within Psyr_4011
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 4,775,918 + Psyr_4009 0.37 -1.2 4,775,918 + Psyr_4009 0.37 -0.5 4,775,918 + Psyr_4009 0.37 +4.1 4,775,918 + Psyr_4009 0.37 +0.8 4,775,918 + Psyr_4009 0.37 +1.9 4,775,918 + Psyr_4009 0.37 -2.1 4,775,919 - Psyr_4009 0.37 -0.6 4,775,919 - Psyr_4009 0.37 -1.0 4,775,919 - Psyr_4009 0.37 -1.7 4,775,919 - Psyr_4009 0.37 -0.1 4,775,919 - Psyr_4009 0.37 +0.4 4,775,919 - Psyr_4009 0.37 -0.4 4,776,498 - Psyr_4009 0.77 +1.1 4,776,560 + Psyr_4009 0.81 -2.3 4,776,561 - Psyr_4009 0.81 +4.3 4,776,561 - Psyr_4009 0.81 -2.7 4,776,561 - Psyr_4009 0.81 -0.7 4,776,561 - Psyr_4009 0.81 -0.8 4,776,612 - Psyr_4009 0.84 -1.4 4,776,612 - Psyr_4009 0.84 +3.1 4,776,612 - Psyr_4009 0.84 -1.9 4,776,612 - Psyr_4009 0.84 -1.4 4,776,612 - Psyr_4009 0.84 -0.9 4,776,752 + -1.1 4,776,752 + +0.1 4,776,752 + -0.4 4,776,752 + -1.9 4,776,753 - -0.7 4,776,753 - -1.1 4,776,753 - -1.1 4,776,921 + +0.1 4,776,921 + -0.2 4,776,922 - +0.5 4,776,922 - +0.1 4,776,922 - +0.8 4,776,922 - +0.9 4,776,922 - -3.2 4,776,984 + +1.4 4,776,985 - +0.5 4,776,990 + -1.6 4,776,991 - -0.1 4,776,991 - +0.4 4,777,075 - Psyr_4010 0.13 -0.4 4,777,149 + Psyr_4010 0.19 +0.7 4,777,149 + Psyr_4010 0.19 -2.1 4,777,150 - Psyr_4010 0.19 +0.2 4,777,240 + Psyr_4010 0.26 -0.5 4,777,240 + Psyr_4010 0.26 -0.0 4,777,240 + Psyr_4010 0.26 -0.6 4,777,241 - Psyr_4010 0.26 +0.0 4,777,241 - Psyr_4010 0.26 -1.4 4,777,241 - Psyr_4010 0.26 -1.6 4,777,332 + Psyr_4010 0.33 -0.2 4,777,332 + Psyr_4010 0.33 +0.4 4,777,332 + Psyr_4010 0.33 -0.8 4,777,332 + Psyr_4010 0.33 +1.3 4,777,332 + Psyr_4010 0.33 -2.2 4,777,332 + Psyr_4010 0.33 -0.6 4,777,332 + Psyr_4010 0.33 -2.5 4,777,332 + Psyr_4010 0.33 +0.1 4,777,332 + Psyr_4010 0.33 -1.3 4,777,332 + Psyr_4010 0.33 +0.6 4,777,332 + Psyr_4010 0.33 -0.1 4,777,332 + Psyr_4010 0.33 +0.1 4,777,332 + Psyr_4010 0.33 -1.5 4,777,332 + Psyr_4010 0.33 +0.2 4,777,332 + Psyr_4010 0.33 -1.8 4,777,332 + Psyr_4010 0.33 -0.2 4,777,332 + Psyr_4010 0.33 -0.7 4,777,333 - Psyr_4010 0.33 +0.3 4,777,333 - Psyr_4010 0.33 +1.1 4,777,333 - Psyr_4010 0.33 -1.4 4,777,333 - Psyr_4010 0.33 -1.6 4,777,333 - Psyr_4010 0.33 +2.1 4,777,333 - Psyr_4010 0.33 -1.5 4,777,333 - Psyr_4010 0.33 -0.5 4,777,333 - Psyr_4010 0.33 -0.2 4,777,333 - Psyr_4010 0.33 +1.5 4,777,333 - Psyr_4010 0.33 -3.2 4,777,333 - Psyr_4010 0.33 +0.5 4,777,333 - Psyr_4010 0.33 -0.3 4,777,333 - Psyr_4010 0.33 -0.4 4,777,333 - Psyr_4010 0.33 +1.3 4,777,333 - Psyr_4010 0.33 -2.0 4,777,333 - Psyr_4010 0.33 +0.7 4,777,334 + Psyr_4010 0.33 +0.3 4,777,334 + Psyr_4010 0.33 +0.4 4,777,334 + Psyr_4010 0.33 +0.5 4,777,334 + Psyr_4010 0.33 -0.3 4,777,335 - Psyr_4010 0.33 -0.3 4,777,335 - Psyr_4010 0.33 -0.8 4,777,335 - Psyr_4010 0.33 +1.1 4,777,335 - Psyr_4010 0.33 -0.6 4,777,335 - Psyr_4010 0.33 +1.8 4,777,359 + Psyr_4010 0.35 -0.5 4,777,359 + Psyr_4010 0.35 -0.8 4,777,359 + Psyr_4010 0.35 -1.1 4,777,359 + Psyr_4010 0.35 -1.1 4,777,359 + Psyr_4010 0.35 +0.4 4,777,359 + Psyr_4010 0.35 -2.8 4,777,359 + Psyr_4010 0.35 +0.8 4,777,360 - Psyr_4010 0.35 -1.8 4,777,360 - Psyr_4010 0.35 -0.7 4,777,360 - Psyr_4010 0.35 +0.3 4,777,360 - Psyr_4010 0.35 +3.9 4,777,360 - Psyr_4010 0.35 -2.2 4,777,401 + Psyr_4010 0.38 -1.6 4,777,401 + Psyr_4010 0.38 -0.3 4,777,401 + Psyr_4010 0.38 +0.7 4,777,402 - Psyr_4010 0.38 +0.7 4,777,413 + Psyr_4010 0.39 -1.2 4,777,413 + Psyr_4010 0.39 +0.4 4,777,413 + Psyr_4010 0.39 +0.7 4,777,413 + Psyr_4010 0.39 -1.8 4,777,413 + Psyr_4010 0.39 -1.5 4,777,413 + Psyr_4010 0.39 -0.6 4,777,413 + Psyr_4010 0.39 -1.7 4,777,413 + Psyr_4010 0.39 -2.1 4,777,413 + Psyr_4010 0.39 +1.0 4,777,414 - Psyr_4010 0.39 -0.5 4,777,414 - Psyr_4010 0.39 +1.1 4,777,414 - Psyr_4010 0.39 -0.2 4,777,414 - Psyr_4010 0.39 -2.0 4,777,414 - Psyr_4010 0.39 +1.9 4,777,414 - Psyr_4010 0.39 -0.8 4,777,414 - Psyr_4010 0.39 -0.8 4,777,414 - Psyr_4010 0.39 +1.1 4,777,428 + Psyr_4010 0.40 -0.5 4,777,429 - Psyr_4010 0.40 +4.6 4,777,713 + Psyr_4010 0.62 +1.3 4,777,714 - Psyr_4010 0.62 -1.6 4,777,728 + Psyr_4010 0.63 +2.1 4,777,729 - Psyr_4010 0.64 +2.1 4,777,729 - Psyr_4010 0.64 -0.9 4,777,729 - Psyr_4010 0.64 -0.6 4,777,729 - Psyr_4010 0.64 +0.9 4,777,767 + Psyr_4010 0.66 +1.8 4,777,767 + Psyr_4010 0.66 +0.2 4,777,767 + Psyr_4010 0.66 +1.2 4,777,767 + Psyr_4010 0.66 -0.3 4,777,767 + Psyr_4010 0.66 -0.7 4,777,767 + Psyr_4010 0.66 +2.4 4,777,767 + Psyr_4010 0.66 +0.9 4,777,767 + Psyr_4010 0.66 +0.2 4,777,767 + Psyr_4010 0.66 +1.1 4,777,767 + Psyr_4010 0.66 -0.6 4,777,767 + Psyr_4010 0.66 -0.4 4,777,767 + Psyr_4010 0.66 +2.7 4,777,767 + Psyr_4010 0.66 -0.9 4,777,767 + Psyr_4010 0.66 -1.4 4,777,767 + Psyr_4010 0.66 +2.1 4,777,768 - Psyr_4010 0.67 +3.4 4,777,768 - Psyr_4010 0.67 -0.2 4,777,768 - Psyr_4010 0.67 +1.1 4,777,768 - Psyr_4010 0.67 -0.0 4,777,768 - Psyr_4010 0.67 -0.4 4,777,768 - Psyr_4010 0.67 -0.5 4,777,768 - Psyr_4010 0.67 +0.1 4,777,768 - Psyr_4010 0.67 +0.5 4,777,768 - Psyr_4010 0.67 -0.0 4,777,768 - Psyr_4010 0.67 +1.1 4,777,768 - Psyr_4010 0.67 -0.0 4,777,786 - Psyr_4010 0.68 -0.4 4,777,863 + Psyr_4010 0.74 -0.8 4,777,863 + Psyr_4010 0.74 +0.1 4,777,863 + Psyr_4010 0.74 -0.7 4,777,864 - Psyr_4010 0.74 -1.6 4,777,864 - Psyr_4010 0.74 -0.7 4,777,864 - Psyr_4010 0.74 -1.6 4,778,070 + Psyr_4010 0.90 +1.1 4,778,071 - Psyr_4010 0.90 -0.7 4,778,088 + -1.4 4,778,088 + -0.7 4,778,088 + -2.4 4,778,088 + +0.1 4,778,088 + +1.4 4,778,089 - +0.3 4,778,089 - -0.9 4,778,089 - -0.1 4,778,092 + -0.3 4,778,092 + +1.8 4,778,092 + -0.1 4,778,092 + -0.2 4,778,092 + -0.9 4,778,092 + -0.5 4,778,093 - -1.9 4,778,093 - +0.3 4,778,094 + -1.1 4,778,094 + -0.2 4,778,094 + +0.1 4,778,094 + +0.9 4,778,094 + +0.7 4,778,094 + +1.4 4,778,094 + +0.4 4,778,094 + +1.5 4,778,094 + -1.5 4,778,094 + +0.5 4,778,094 + -1.2 4,778,094 + -1.3 4,778,094 + +2.1 4,778,094 + +1.1 4,778,094 + +0.3 4,778,094 + -0.9 4,778,095 - -1.3 4,778,095 - -0.9 4,778,095 - -0.2 4,778,095 - +0.7 4,778,095 - +0.0 4,778,095 - -1.0 4,778,095 - -2.2 4,778,095 - -2.4 4,778,095 - +0.6 4,778,095 - -0.6 4,778,095 - -1.5 4,778,095 - +0.8 4,778,095 - -1.7 4,778,095 - +1.1 4,778,095 - +0.1 4,778,095 - -1.2 4,778,095 - -0.9 4,778,095 - +0.9 4,778,095 - -1.0 4,778,095 - -1.2 4,778,175 + +1.1 4,778,175 + +2.8 4,778,175 + +0.2 4,778,176 - -0.7 4,778,176 - -0.2 4,778,176 - -1.1 4,778,176 - +0.4 4,778,197 + +0.5 4,778,197 + +1.1 4,778,198 - -0.0 4,778,198 - +0.9 4,778,198 - -0.7 4,778,204 + -2.2 4,778,205 - +0.8 4,778,230 - +1.1 4,778,416 + +0.1 4,778,706 - Psyr_4011 0.24 +0.6
Or see this region's nucleotide sequence