Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3999 and Psyr_4000 are separated by 170 nucleotides Psyr_4000 and Psyr_4001 are separated by 167 nucleotides Psyr_4001 and Psyr_4002 are separated by 145 nucleotides Psyr_4002 and Psyr_4003 are separated by 0 nucleotides
Psyr_3999: Psyr_3999 - General substrate transporter:Major facilitator superfamily, at 4,763,337 to 4,764,662
_3999
Psyr_4000: Psyr_4000 - hypothetical protein, at 4,764,833 to 4,765,087
_4000
Psyr_4001: Psyr_4001 - conserved domain protein, at 4,765,255 to 4,765,572
_4001
Psyr_4002: Psyr_4002 - conserved hypothetical protein, at 4,765,718 to 4,766,341
_4002
Psyr_4003: Psyr_4003 - conserved hypothetical protein, at 4,766,342 to 4,766,581
_4003
Position (kb) 4765
4766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4764.305 kb on - strand, within Psyr_3999 at 4764.321 kb on - strand, within Psyr_3999 at 4764.348 kb on - strand, within Psyr_3999 at 4764.348 kb on - strand, within Psyr_3999 at 4764.348 kb on - strand, within Psyr_3999 at 4764.348 kb on - strand, within Psyr_3999 at 4764.413 kb on + strand, within Psyr_3999 at 4764.413 kb on + strand, within Psyr_3999 at 4764.414 kb on - strand, within Psyr_3999 at 4764.414 kb on - strand, within Psyr_3999 at 4764.414 kb on - strand, within Psyr_3999 at 4764.414 kb on - strand, within Psyr_3999 at 4764.525 kb on + strand, within Psyr_3999 at 4764.525 kb on + strand, within Psyr_3999 at 4764.525 kb on + strand, within Psyr_3999 at 4764.526 kb on - strand, within Psyr_3999 at 4764.570 kb on + strand at 4764.570 kb on + strand at 4764.571 kb on - strand at 4764.571 kb on - strand at 4764.576 kb on + strand at 4764.576 kb on + strand at 4764.576 kb on + strand at 4764.577 kb on - strand at 4764.577 kb on - strand at 4764.577 kb on - strand at 4764.591 kb on - strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.706 kb on + strand at 4764.706 kb on + strand at 4764.707 kb on - strand at 4764.707 kb on - strand at 4764.707 kb on - strand at 4764.707 kb on - strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.709 kb on - strand at 4764.709 kb on - strand at 4764.709 kb on - strand at 4764.709 kb on - strand at 4764.709 kb on - strand at 4764.709 kb on - strand at 4764.709 kb on - strand at 4764.709 kb on - strand at 4764.709 kb on - strand at 4764.709 kb on - strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.766 kb on + strand at 4764.766 kb on + strand at 4764.767 kb on - strand at 4764.774 kb on + strand at 4764.775 kb on - strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.851 kb on - strand at 4764.896 kb on + strand, within Psyr_4000 at 4764.897 kb on - strand, within Psyr_4000 at 4764.908 kb on + strand, within Psyr_4000 at 4764.909 kb on - strand, within Psyr_4000 at 4764.909 kb on - strand, within Psyr_4000 at 4764.926 kb on + strand, within Psyr_4000 at 4764.926 kb on + strand, within Psyr_4000 at 4764.926 kb on + strand, within Psyr_4000 at 4764.926 kb on + strand, within Psyr_4000 at 4764.926 kb on + strand, within Psyr_4000 at 4764.927 kb on - strand, within Psyr_4000 at 4764.927 kb on - strand, within Psyr_4000 at 4764.927 kb on - strand, within Psyr_4000 at 4764.927 kb on - strand, within Psyr_4000 at 4764.927 kb on - strand, within Psyr_4000 at 4764.927 kb on - strand, within Psyr_4000 at 4764.953 kb on + strand, within Psyr_4000 at 4765.028 kb on - strand, within Psyr_4000 at 4765.090 kb on + strand at 4765.138 kb on + strand at 4765.139 kb on - strand at 4765.169 kb on + strand at 4765.169 kb on + strand at 4765.170 kb on - strand at 4765.172 kb on + strand at 4765.173 kb on - strand at 4765.173 kb on - strand at 4765.173 kb on - strand at 4765.181 kb on - strand at 4765.183 kb on + strand at 4765.183 kb on + strand at 4765.198 kb on + strand at 4765.198 kb on + strand at 4765.198 kb on + strand at 4765.213 kb on - strand at 4765.287 kb on + strand, within Psyr_4001 at 4765.288 kb on - strand, within Psyr_4001 at 4765.390 kb on - strand, within Psyr_4001 at 4765.550 kb on + strand at 4765.679 kb on + strand at 4765.679 kb on + strand at 4765.679 kb on + strand at 4765.680 kb on - strand at 4765.680 kb on - strand at 4765.694 kb on + strand at 4765.729 kb on + strand at 4765.730 kb on - strand at 4765.740 kb on - strand at 4765.791 kb on + strand, within Psyr_4002 at 4765.791 kb on + strand, within Psyr_4002 at 4765.856 kb on + strand, within Psyr_4002 at 4765.856 kb on + strand, within Psyr_4002 at 4765.856 kb on + strand, within Psyr_4002 at 4765.857 kb on - strand, within Psyr_4002 at 4765.857 kb on - strand, within Psyr_4002 at 4765.857 kb on - strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.933 kb on + strand, within Psyr_4002 at 4765.933 kb on + strand, within Psyr_4002 at 4765.933 kb on + strand, within Psyr_4002 at 4765.933 kb on + strand, within Psyr_4002 at 4765.937 kb on - strand, within Psyr_4002 at 4766.092 kb on - strand, within Psyr_4002 at 4766.238 kb on - strand, within Psyr_4002 at 4766.238 kb on - strand, within Psyr_4002 at 4766.288 kb on + strand at 4766.288 kb on + strand at 4766.515 kb on + strand, within Psyr_4003 at 4766.515 kb on + strand, within Psyr_4003 at 4766.515 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.518 kb on - strand, within Psyr_4003 at 4766.565 kb on + strand at 4766.565 kb on + strand at 4766.565 kb on + strand at 4766.565 kb on + strand at 4766.566 kb on - strand at 4766.566 kb on - strand at 4766.566 kb on - strand at 4766.566 kb on - strand at 4766.566 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 4,764,305 - Psyr_3999 0.73 -0.2 4,764,321 - Psyr_3999 0.74 -1.5 4,764,348 - Psyr_3999 0.76 +2.1 4,764,348 - Psyr_3999 0.76 +0.4 4,764,348 - Psyr_3999 0.76 -0.2 4,764,348 - Psyr_3999 0.76 -1.0 4,764,413 + Psyr_3999 0.81 -0.3 4,764,413 + Psyr_3999 0.81 -1.5 4,764,414 - Psyr_3999 0.81 -0.9 4,764,414 - Psyr_3999 0.81 -0.3 4,764,414 - Psyr_3999 0.81 -0.3 4,764,414 - Psyr_3999 0.81 -1.5 4,764,525 + Psyr_3999 0.90 -1.7 4,764,525 + Psyr_3999 0.90 +0.3 4,764,525 + Psyr_3999 0.90 -1.4 4,764,526 - Psyr_3999 0.90 -3.3 4,764,570 + -2.1 4,764,570 + -0.4 4,764,571 - -1.7 4,764,571 - -0.0 4,764,576 + -1.4 4,764,576 + -0.6 4,764,576 + -0.8 4,764,577 - +0.3 4,764,577 - +1.5 4,764,577 - -1.1 4,764,591 - -0.2 4,764,612 + -0.5 4,764,612 + -0.3 4,764,612 + -0.9 4,764,612 + -0.1 4,764,612 + +1.5 4,764,612 + +1.4 4,764,612 + +2.1 4,764,612 + -0.8 4,764,612 + +1.2 4,764,612 + +1.4 4,764,613 - +0.6 4,764,613 - +1.3 4,764,613 - -0.7 4,764,613 - -0.5 4,764,613 - +3.4 4,764,613 - +0.3 4,764,613 - +0.3 4,764,613 - -0.8 4,764,613 - +0.4 4,764,613 - +0.3 4,764,613 - +2.1 4,764,613 - -0.1 4,764,613 - +0.3 4,764,613 - -1.2 4,764,613 - -0.2 4,764,706 + +0.8 4,764,706 + -1.7 4,764,707 - -0.7 4,764,707 - +0.5 4,764,707 - -0.2 4,764,707 - -1.4 4,764,708 + +0.7 4,764,708 + +1.5 4,764,708 + -0.2 4,764,708 + -1.2 4,764,708 + -0.5 4,764,708 + -0.6 4,764,708 + +0.1 4,764,708 + -1.1 4,764,708 + +0.5 4,764,708 + +2.1 4,764,709 - +1.7 4,764,709 - -0.2 4,764,709 - -0.2 4,764,709 - -0.5 4,764,709 - +0.2 4,764,709 - +1.1 4,764,709 - +0.3 4,764,709 - -1.1 4,764,709 - -0.3 4,764,709 - -1.0 4,764,710 + +0.1 4,764,710 + +0.1 4,764,710 + -0.4 4,764,710 + +0.5 4,764,710 + +1.7 4,764,710 + -1.1 4,764,710 + -1.1 4,764,710 + -0.9 4,764,710 + +1.0 4,764,710 + +0.4 4,764,710 + +0.1 4,764,710 + +1.1 4,764,711 - +0.5 4,764,711 - +0.3 4,764,711 - +1.1 4,764,711 - +0.4 4,764,711 - -0.5 4,764,711 - -0.4 4,764,711 - +1.3 4,764,711 - -1.3 4,764,711 - +0.2 4,764,711 - -0.5 4,764,711 - +0.2 4,764,711 - +2.1 4,764,711 - +1.5 4,764,766 + -1.2 4,764,766 + +2.1 4,764,767 - +0.5 4,764,774 + -0.7 4,764,775 - +0.6 4,764,848 + -0.2 4,764,848 + -1.1 4,764,848 + -0.9 4,764,848 + -1.2 4,764,848 + -0.4 4,764,848 + +0.5 4,764,848 + -0.5 4,764,848 + -1.4 4,764,849 - -0.5 4,764,849 - +3.1 4,764,849 - +1.0 4,764,849 - -0.0 4,764,849 - +0.5 4,764,849 - -1.6 4,764,849 - +2.1 4,764,849 - +0.4 4,764,851 - -0.8 4,764,896 + Psyr_4000 0.25 -1.3 4,764,897 - Psyr_4000 0.25 -0.2 4,764,908 + Psyr_4000 0.29 +0.6 4,764,909 - Psyr_4000 0.30 +0.1 4,764,909 - Psyr_4000 0.30 +0.0 4,764,926 + Psyr_4000 0.36 +0.1 4,764,926 + Psyr_4000 0.36 +0.7 4,764,926 + Psyr_4000 0.36 +0.1 4,764,926 + Psyr_4000 0.36 -0.9 4,764,926 + Psyr_4000 0.36 +1.1 4,764,927 - Psyr_4000 0.37 +1.1 4,764,927 - Psyr_4000 0.37 +0.3 4,764,927 - Psyr_4000 0.37 +0.1 4,764,927 - Psyr_4000 0.37 -3.0 4,764,927 - Psyr_4000 0.37 -0.5 4,764,927 - Psyr_4000 0.37 -0.3 4,764,953 + Psyr_4000 0.47 -1.1 4,765,028 - Psyr_4000 0.76 +0.5 4,765,090 + +0.5 4,765,138 + -0.7 4,765,139 - -0.5 4,765,169 + +1.8 4,765,169 + +0.7 4,765,170 - -1.8 4,765,172 + -1.1 4,765,173 - +0.4 4,765,173 - +0.2 4,765,173 - -0.5 4,765,181 - -0.0 4,765,183 + -0.2 4,765,183 + -1.9 4,765,198 + +3.7 4,765,198 + +0.6 4,765,198 + +0.4 4,765,213 - -0.9 4,765,287 + Psyr_4001 0.10 -2.2 4,765,288 - Psyr_4001 0.10 -1.9 4,765,390 - Psyr_4001 0.42 -1.5 4,765,550 + +0.9 4,765,679 + -2.8 4,765,679 + -0.5 4,765,679 + -0.2 4,765,680 - -0.8 4,765,680 - -0.4 4,765,694 + -1.2 4,765,729 + -0.1 4,765,730 - +0.5 4,765,740 - -1.9 4,765,791 + Psyr_4002 0.12 -0.4 4,765,791 + Psyr_4002 0.12 -1.5 4,765,856 + Psyr_4002 0.22 +0.1 4,765,856 + Psyr_4002 0.22 -1.7 4,765,856 + Psyr_4002 0.22 +1.2 4,765,857 - Psyr_4002 0.22 -0.8 4,765,857 - Psyr_4002 0.22 -0.8 4,765,857 - Psyr_4002 0.22 +1.1 4,765,880 + Psyr_4002 0.26 +1.6 4,765,880 + Psyr_4002 0.26 +0.1 4,765,880 + Psyr_4002 0.26 -0.9 4,765,880 + Psyr_4002 0.26 +0.9 4,765,880 + Psyr_4002 0.26 +1.1 4,765,881 - Psyr_4002 0.26 +0.6 4,765,881 - Psyr_4002 0.26 -0.1 4,765,881 - Psyr_4002 0.26 +0.8 4,765,933 + Psyr_4002 0.34 +1.0 4,765,933 + Psyr_4002 0.34 -0.0 4,765,933 + Psyr_4002 0.34 -0.2 4,765,933 + Psyr_4002 0.34 -1.3 4,765,937 - Psyr_4002 0.35 -0.1 4,766,092 - Psyr_4002 0.60 -0.9 4,766,238 - Psyr_4002 0.83 -0.3 4,766,238 - Psyr_4002 0.83 -0.1 4,766,288 + +0.8 4,766,288 + -0.9 4,766,515 + Psyr_4003 0.72 +0.3 4,766,515 + Psyr_4003 0.72 -1.2 4,766,515 + Psyr_4003 0.72 -0.2 4,766,517 + Psyr_4003 0.73 +1.3 4,766,517 + Psyr_4003 0.73 -1.0 4,766,517 + Psyr_4003 0.73 -2.1 4,766,517 + Psyr_4003 0.73 +1.1 4,766,517 + Psyr_4003 0.73 +0.7 4,766,517 + Psyr_4003 0.73 -0.8 4,766,517 + Psyr_4003 0.73 +1.0 4,766,518 - Psyr_4003 0.73 +1.8 4,766,565 + +0.4 4,766,565 + +0.3 4,766,565 + +1.2 4,766,565 + +0.1 4,766,566 - +1.1 4,766,566 - -1.2 4,766,566 - -1.1 4,766,566 - +2.1 4,766,566 - -0.2
Or see this region's nucleotide sequence