Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3865

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3864 and Psyr_3865 are separated by 111 nucleotidesPsyr_3865 and Psyr_3866 are separated by 117 nucleotidesPsyr_3866 and Psyr_3867 are separated by 9 nucleotides Psyr_3864: Psyr_3864 - TonB-dependent siderophore receptor, at 4,603,314 to 4,605,749 _3864 Psyr_3865: Psyr_3865 - conserved hypothetical protein, at 4,605,861 to 4,606,412 _3865 Psyr_3866: Psyr_3866 - conserved hypothetical protein, at 4,606,530 to 4,607,021 _3866 Psyr_3867: Psyr_3867 - hypothetical protein, at 4,607,031 to 4,607,360 _3867 Position (kb) 4605 4606 4607Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4604.903 kb on - strand, within Psyr_3864at 4604.903 kb on - strand, within Psyr_3864at 4604.903 kb on - strand, within Psyr_3864at 4604.903 kb on - strand, within Psyr_3864at 4604.903 kb on - strand, within Psyr_3864at 4604.903 kb on - strand, within Psyr_3864at 4604.905 kb on + strand, within Psyr_3864at 4604.905 kb on + strand, within Psyr_3864at 4604.905 kb on + strand, within Psyr_3864at 4604.905 kb on + strand, within Psyr_3864at 4604.905 kb on + strand, within Psyr_3864at 4604.906 kb on - strand, within Psyr_3864at 4604.906 kb on - strand, within Psyr_3864at 4604.906 kb on - strand, within Psyr_3864at 4604.906 kb on - strand, within Psyr_3864at 4604.906 kb on - strand, within Psyr_3864at 4604.906 kb on - strand, within Psyr_3864at 4604.944 kb on + strand, within Psyr_3864at 4604.945 kb on - strand, within Psyr_3864at 4604.953 kb on + strand, within Psyr_3864at 4604.953 kb on + strand, within Psyr_3864at 4604.954 kb on - strand, within Psyr_3864at 4604.954 kb on - strand, within Psyr_3864at 4604.954 kb on - strand, within Psyr_3864at 4604.974 kb on + strand, within Psyr_3864at 4604.974 kb on + strand, within Psyr_3864at 4604.975 kb on - strand, within Psyr_3864at 4604.975 kb on - strand, within Psyr_3864at 4604.975 kb on - strand, within Psyr_3864at 4605.007 kb on + strand, within Psyr_3864at 4605.061 kb on + strand, within Psyr_3864at 4605.061 kb on + strand, within Psyr_3864at 4605.061 kb on + strand, within Psyr_3864at 4605.061 kb on + strand, within Psyr_3864at 4605.061 kb on + strand, within Psyr_3864at 4605.061 kb on + strand, within Psyr_3864at 4605.061 kb on + strand, within Psyr_3864at 4605.061 kb on + strand, within Psyr_3864at 4605.061 kb on + strand, within Psyr_3864at 4605.062 kb on - strand, within Psyr_3864at 4605.062 kb on - strand, within Psyr_3864at 4605.062 kb on - strand, within Psyr_3864at 4605.062 kb on - strand, within Psyr_3864at 4605.062 kb on - strand, within Psyr_3864at 4605.062 kb on - strand, within Psyr_3864at 4605.062 kb on - strand, within Psyr_3864at 4605.062 kb on - strand, within Psyr_3864at 4605.062 kb on - strand, within Psyr_3864at 4605.062 kb on - strand, within Psyr_3864at 4605.062 kb on - strand, within Psyr_3864at 4605.062 kb on - strand, within Psyr_3864at 4605.181 kb on + strand, within Psyr_3864at 4605.181 kb on + strand, within Psyr_3864at 4605.182 kb on - strand, within Psyr_3864at 4605.182 kb on - strand, within Psyr_3864at 4605.262 kb on - strand, within Psyr_3864at 4605.262 kb on - strand, within Psyr_3864at 4605.275 kb on - strand, within Psyr_3864at 4605.275 kb on - strand, within Psyr_3864at 4605.433 kb on + strand, within Psyr_3864at 4605.433 kb on + strand, within Psyr_3864at 4605.433 kb on + strand, within Psyr_3864at 4605.434 kb on - strand, within Psyr_3864at 4605.434 kb on - strand, within Psyr_3864at 4605.631 kb on + strandat 4605.631 kb on + strandat 4605.769 kb on + strandat 4605.770 kb on - strandat 4605.770 kb on - strandat 4605.770 kb on - strandat 4605.770 kb on - strandat 4605.770 kb on - strandat 4605.808 kb on + strandat 4605.809 kb on - strandat 4606.072 kb on + strand, within Psyr_3865at 4606.072 kb on + strand, within Psyr_3865at 4606.072 kb on + strand, within Psyr_3865at 4606.072 kb on + strand, within Psyr_3865at 4606.072 kb on + strand, within Psyr_3865at 4606.072 kb on + strand, within Psyr_3865at 4606.072 kb on + strand, within Psyr_3865at 4606.072 kb on + strand, within Psyr_3865at 4606.073 kb on - strand, within Psyr_3865at 4606.073 kb on - strand, within Psyr_3865at 4606.073 kb on - strand, within Psyr_3865at 4606.073 kb on - strand, within Psyr_3865at 4606.073 kb on - strand, within Psyr_3865at 4606.073 kb on - strand, within Psyr_3865at 4606.073 kb on - strand, within Psyr_3865at 4606.073 kb on - strand, within Psyr_3865at 4606.111 kb on - strand, within Psyr_3865at 4606.350 kb on + strand, within Psyr_3865at 4606.428 kb on + strandat 4606.429 kb on - strandat 4606.429 kb on - strandat 4606.429 kb on - strandat 4606.429 kb on - strandat 4606.440 kb on + strandat 4606.441 kb on - strandat 4606.454 kb on - strandat 4606.501 kb on + strandat 4606.550 kb on + strandat 4606.551 kb on - strandat 4606.551 kb on - strandat 4606.561 kb on + strandat 4606.561 kb on + strandat 4606.562 kb on - strandat 4606.562 kb on - strandat 4606.562 kb on - strandat 4606.695 kb on + strand, within Psyr_3866at 4606.695 kb on + strand, within Psyr_3866at 4606.695 kb on + strand, within Psyr_3866at 4606.695 kb on + strand, within Psyr_3866at 4606.696 kb on - strand, within Psyr_3866at 4606.696 kb on - strand, within Psyr_3866at 4606.749 kb on + strand, within Psyr_3866at 4606.749 kb on + strand, within Psyr_3866at 4606.750 kb on - strand, within Psyr_3866at 4606.750 kb on - strand, within Psyr_3866at 4606.750 kb on - strand, within Psyr_3866at 4606.875 kb on + strand, within Psyr_3866at 4606.875 kb on + strand, within Psyr_3866at 4606.875 kb on + strand, within Psyr_3866at 4606.875 kb on + strand, within Psyr_3866at 4606.875 kb on + strand, within Psyr_3866at 4606.876 kb on - strand, within Psyr_3866at 4606.876 kb on - strand, within Psyr_3866at 4606.876 kb on - strand, within Psyr_3866at 4606.876 kb on - strand, within Psyr_3866at 4606.876 kb on - strand, within Psyr_3866at 4607.027 kb on - strandat 4607.027 kb on - strandat 4607.027 kb on - strandat 4607.027 kb on - strandat 4607.276 kb on + strand, within Psyr_3867at 4607.277 kb on - strand, within Psyr_3867at 4607.317 kb on - strand, within Psyr_3867at 4607.354 kb on + strandat 4607.354 kb on + strandat 4607.384 kb on + strandat 4607.384 kb on + strandat 4607.384 kb on + strandat 4607.384 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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4,604,903 - Psyr_3864 0.65 +0.9
4,604,903 - Psyr_3864 0.65 +0.5
4,604,903 - Psyr_3864 0.65 -1.4
4,604,903 - Psyr_3864 0.65 -0.0
4,604,903 - Psyr_3864 0.65 -0.1
4,604,903 - Psyr_3864 0.65 -0.5
4,604,905 + Psyr_3864 0.65 -3.1
4,604,905 + Psyr_3864 0.65 -1.1
4,604,905 + Psyr_3864 0.65 -0.9
4,604,905 + Psyr_3864 0.65 +0.6
4,604,905 + Psyr_3864 0.65 -0.5
4,604,906 - Psyr_3864 0.65 +0.4
4,604,906 - Psyr_3864 0.65 -0.4
4,604,906 - Psyr_3864 0.65 +0.9
4,604,906 - Psyr_3864 0.65 +0.4
4,604,906 - Psyr_3864 0.65 +1.1
4,604,906 - Psyr_3864 0.65 +0.0
4,604,944 + Psyr_3864 0.67 -0.3
4,604,945 - Psyr_3864 0.67 +0.8
4,604,953 + Psyr_3864 0.67 +0.1
4,604,953 + Psyr_3864 0.67 +0.5
4,604,954 - Psyr_3864 0.67 +0.7
4,604,954 - Psyr_3864 0.67 +1.6
4,604,954 - Psyr_3864 0.67 -0.8
4,604,974 + Psyr_3864 0.68 -0.3
4,604,974 + Psyr_3864 0.68 -1.5
4,604,975 - Psyr_3864 0.68 -0.3
4,604,975 - Psyr_3864 0.68 -1.5
4,604,975 - Psyr_3864 0.68 -0.8
4,605,007 + Psyr_3864 0.69 -1.5
4,605,061 + Psyr_3864 0.72 +3.4
4,605,061 + Psyr_3864 0.72 -2.2
4,605,061 + Psyr_3864 0.72 -1.0
4,605,061 + Psyr_3864 0.72 +0.2
4,605,061 + Psyr_3864 0.72 +1.1
4,605,061 + Psyr_3864 0.72 +0.8
4,605,061 + Psyr_3864 0.72 +1.1
4,605,061 + Psyr_3864 0.72 +1.1
4,605,061 + Psyr_3864 0.72 +1.1
4,605,062 - Psyr_3864 0.72 +0.8
4,605,062 - Psyr_3864 0.72 +0.8
4,605,062 - Psyr_3864 0.72 +0.1
4,605,062 - Psyr_3864 0.72 +1.3
4,605,062 - Psyr_3864 0.72 +0.2
4,605,062 - Psyr_3864 0.72 -0.7
4,605,062 - Psyr_3864 0.72 +1.1
4,605,062 - Psyr_3864 0.72 +0.0
4,605,062 - Psyr_3864 0.72 -0.3
4,605,062 - Psyr_3864 0.72 +0.5
4,605,062 - Psyr_3864 0.72 +0.3
4,605,062 - Psyr_3864 0.72 +0.4
4,605,181 + Psyr_3864 0.77 +1.1
4,605,181 + Psyr_3864 0.77 -1.2
4,605,182 - Psyr_3864 0.77 +0.2
4,605,182 - Psyr_3864 0.77 -0.2
4,605,262 - Psyr_3864 0.80 -0.2
4,605,262 - Psyr_3864 0.80 -2.5
4,605,275 - Psyr_3864 0.81 +1.8
4,605,275 - Psyr_3864 0.81 -1.7
4,605,433 + Psyr_3864 0.87 -0.4
4,605,433 + Psyr_3864 0.87 -2.1
4,605,433 + Psyr_3864 0.87 +1.7
4,605,434 - Psyr_3864 0.87 -1.2
4,605,434 - Psyr_3864 0.87 -1.7
4,605,631 + +0.4
4,605,631 + -1.3
4,605,769 + -0.3
4,605,770 - -0.2
4,605,770 - +0.4
4,605,770 - -1.0
4,605,770 - -0.1
4,605,770 - +1.1
4,605,808 + -1.2
4,605,809 - -0.2
4,606,072 + Psyr_3865 0.38 -1.6
4,606,072 + Psyr_3865 0.38 -0.3
4,606,072 + Psyr_3865 0.38 +2.3
4,606,072 + Psyr_3865 0.38 -0.1
4,606,072 + Psyr_3865 0.38 -2.2
4,606,072 + Psyr_3865 0.38 -2.2
4,606,072 + Psyr_3865 0.38 -1.7
4,606,072 + Psyr_3865 0.38 +0.1
4,606,073 - Psyr_3865 0.38 -1.1
4,606,073 - Psyr_3865 0.38 +1.1
4,606,073 - Psyr_3865 0.38 -2.5
4,606,073 - Psyr_3865 0.38 +0.6
4,606,073 - Psyr_3865 0.38 -1.7
4,606,073 - Psyr_3865 0.38 +1.3
4,606,073 - Psyr_3865 0.38 -0.8
4,606,073 - Psyr_3865 0.38 -1.1
4,606,111 - Psyr_3865 0.45 +0.1
4,606,350 + Psyr_3865 0.89 -0.5
4,606,428 + +1.1
4,606,429 - +0.1
4,606,429 - -0.8
4,606,429 - -1.4
4,606,429 - +0.4
4,606,440 + -0.2
4,606,441 - +0.1
4,606,454 - -0.0
4,606,501 + -1.0
4,606,550 + -1.2
4,606,551 - +0.2
4,606,551 - -0.2
4,606,561 + +0.1
4,606,561 + +0.4
4,606,562 - -0.6
4,606,562 - +0.0
4,606,562 - -0.9
4,606,695 + Psyr_3866 0.34 +4.1
4,606,695 + Psyr_3866 0.34 -1.4
4,606,695 + Psyr_3866 0.34 -0.6
4,606,695 + Psyr_3866 0.34 +0.4
4,606,696 - Psyr_3866 0.34 +1.0
4,606,696 - Psyr_3866 0.34 -0.1
4,606,749 + Psyr_3866 0.45 -0.5
4,606,749 + Psyr_3866 0.45 +0.5
4,606,750 - Psyr_3866 0.45 -0.5
4,606,750 - Psyr_3866 0.45 -1.1
4,606,750 - Psyr_3866 0.45 -1.5
4,606,875 + Psyr_3866 0.70 -0.5
4,606,875 + Psyr_3866 0.70 -0.1
4,606,875 + Psyr_3866 0.70 +0.2
4,606,875 + Psyr_3866 0.70 -1.6
4,606,875 + Psyr_3866 0.70 -0.1
4,606,876 - Psyr_3866 0.70 -0.1
4,606,876 - Psyr_3866 0.70 +0.7
4,606,876 - Psyr_3866 0.70 -0.8
4,606,876 - Psyr_3866 0.70 -2.5
4,606,876 - Psyr_3866 0.70 +0.6
4,607,027 - +1.1
4,607,027 - -0.1
4,607,027 - -2.8
4,607,027 - +0.9
4,607,276 + Psyr_3867 0.74 +0.4
4,607,277 - Psyr_3867 0.75 +2.4
4,607,317 - Psyr_3867 0.87 +0.8
4,607,354 + +0.0
4,607,354 + +0.5
4,607,384 + +0.7
4,607,384 + -0.8
4,607,384 + -0.0
4,607,384 + +0.6

Or see this region's nucleotide sequence