Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3830

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
4,562,560	+		Psyr_3829	0.82	-1.0
4,562,560	+		Psyr_3829	0.82	+0.7
4,562,560	+		Psyr_3829	0.82	+2.4
4,562,566	+		Psyr_3829	0.82	+1.0
4,562,578	+		Psyr_3829	0.83	-0.3
4,562,601	-		Psyr_3829	0.83	-1.5
4,562,694	-		Psyr_3829	0.85	-0.9
4,562,838	-		Psyr_3829	0.88	-3.0
4,562,838	-		Psyr_3829	0.88	-2.3
4,562,909	+		Psyr_3829	0.89	+2.7
4,562,921	+		Psyr_3829	0.90	+0.6
4,562,967	+				+1.9
4,563,263	-				-0.2
4,563,263	-				-2.9
4,563,263	-				+0.1
4,563,263	-				-0.4
4,563,263	-				+0.4
4,563,263	-				-0.5
4,563,281	+				-1.8
4,563,281	+				+0.2
4,563,281	+				+1.0
4,563,281	+				-0.0
4,563,281	+				+1.4
4,563,282	-				-0.8
4,563,282	-				-1.1
4,563,282	-				-0.6
4,563,391	+				-2.2
4,563,391	+				-0.6
4,563,391	+				+0.9
4,563,392	-				+0.5
4,563,392	-				+0.2
4,563,392	-				+0.1
4,563,392	-				+1.1
4,563,392	-				-1.6
4,563,410	+				-0.1
4,563,410	+				-0.2
4,563,410	+				-0.1
4,563,410	+				+0.8
4,563,410	+				-1.1
4,563,410	+				+1.5
4,563,410	+				+0.1
4,563,410	+				-0.5
4,563,410	+				-0.3
4,563,411	-				-0.3
4,563,411	-				+0.0
4,563,411	-				+0.7
4,563,411	-				+0.4
4,563,411	-				+0.5
4,563,411	-				+0.8
4,563,411	-				-1.6
4,563,411	-				-0.4
4,563,461	+				-0.5
4,563,638	+				+2.8
4,563,639	-				-0.8
4,563,639	-				-0.5
4,563,676	-		Psyr_3830	0.11	-1.0
4,563,684	-		Psyr_3830	0.12	+0.8
4,563,684	-		Psyr_3830	0.12	-0.5
4,563,684	-		Psyr_3830	0.12	+0.6
4,563,930	+		Psyr_3830	0.34	+0.3
4,564,098	+		Psyr_3830	0.49	+2.4
4,564,098	+		Psyr_3830	0.49	+2.5
4,564,098	+		Psyr_3830	0.49	-0.1
4,564,098	+		Psyr_3830	0.49	-0.5
4,564,306	+		Psyr_3830	0.68	-0.5
4,564,307	-		Psyr_3830	0.68	+0.1
4,564,307	-		Psyr_3830	0.68	+0.9
4,564,367	-		Psyr_3830	0.73	+0.9
4,564,367	-		Psyr_3830	0.73	+0.3
4,564,367	-		Psyr_3830	0.73	+0.9
4,564,367	-		Psyr_3830	0.73	+0.6
4,564,367	-		Psyr_3830	0.73	+2.3
4,564,367	-		Psyr_3830	0.73	+0.5
4,564,367	-		Psyr_3830	0.73	+0.1
4,564,367	-		Psyr_3830	0.73	+2.1
4,564,580	+				+0.7
4,564,580	+				+0.3
4,564,580	+				-1.0
4,564,580	+				+0.7
4,564,580	+				-0.4
4,564,580	+				+2.7
4,564,581	-				+0.3
4,564,581	-				+0.5
4,564,581	-				-0.3
4,564,581	-				+0.7
4,564,581	-				-0.0
4,564,696	+				-0.5
4,564,763	+				-1.1
4,564,764	-				-1.0
4,564,764	-				-1.7
4,564,862	+				+0.6
4,564,862	+				-0.7
4,564,863	-				+0.6
4,564,864	+				+0.5
4,564,864	+				+1.2
4,564,864	+				+0.2
4,564,864	+				+1.0
4,564,865	-				+1.4
4,564,865	-				+0.4
4,564,865	-				+0.2
4,564,865	-				+0.4
4,564,865	-				+1.1
4,564,884	+				+1.1
4,564,884	+				+0.5
4,564,885	-				+0.3
4,564,885	-				-0.5
4,564,885	-				-0.0
4,564,885	-				-1.3
4,564,999	+				-0.4
4,565,081	-				+1.1