Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3756 and Psyr_3757 overlap by 4 nucleotides Psyr_3757 and Psyr_3758 are separated by 234 nucleotides
Psyr_3756: Psyr_3756 - Na+/solute symporter, at 4,472,506 to 4,474,164
_3756
Psyr_3757: Psyr_3757 - Protein of unknown function DUF485, at 4,474,161 to 4,474,472
_3757
Psyr_3758: Psyr_3758 - Substrate-binding region of ABC-type glycine betaine transport system, at 4,474,707 to 4,475,561
_3758
Position (kb) 4474
4475
4476 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.768 kb on - strand, within Psyr_3756 at 4473.768 kb on - strand, within Psyr_3756 at 4473.768 kb on - strand at 4473.768 kb on - strand, within Psyr_3756 at 4473.824 kb on - strand, within Psyr_3756 at 4473.842 kb on + strand, within Psyr_3756 at 4473.843 kb on - strand, within Psyr_3756 at 4473.843 kb on - strand, within Psyr_3756 at 4473.869 kb on + strand, within Psyr_3756 at 4473.870 kb on - strand, within Psyr_3756 at 4473.870 kb on - strand, within Psyr_3756 at 4473.870 kb on - strand, within Psyr_3756 at 4473.870 kb on - strand, within Psyr_3756 at 4473.885 kb on + strand, within Psyr_3756 at 4473.911 kb on + strand, within Psyr_3756 at 4473.911 kb on + strand, within Psyr_3756 at 4473.911 kb on + strand, within Psyr_3756 at 4473.911 kb on + strand, within Psyr_3756 at 4473.911 kb on + strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.968 kb on + strand, within Psyr_3756 at 4473.968 kb on + strand, within Psyr_3756 at 4473.968 kb on + strand, within Psyr_3756 at 4473.969 kb on - strand, within Psyr_3756 at 4473.971 kb on + strand, within Psyr_3756 at 4473.971 kb on + strand, within Psyr_3756 at 4473.971 kb on + strand, within Psyr_3756 at 4473.972 kb on - strand, within Psyr_3756 at 4473.972 kb on - strand, within Psyr_3756 at 4474.008 kb on - strand at 4474.016 kb on + strand at 4474.016 kb on + strand at 4474.016 kb on + strand at 4474.016 kb on + strand at 4474.017 kb on - strand at 4474.017 kb on - strand at 4474.017 kb on - strand at 4474.017 kb on - strand at 4474.017 kb on - strand at 4474.017 kb on - strand at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.242 kb on + strand, within Psyr_3757 at 4474.290 kb on - strand, within Psyr_3757 at 4474.308 kb on + strand, within Psyr_3757 at 4474.308 kb on + strand, within Psyr_3757 at 4474.308 kb on + strand, within Psyr_3757 at 4474.309 kb on - strand, within Psyr_3757 at 4474.309 kb on - strand, within Psyr_3757 at 4474.309 kb on - strand, within Psyr_3757 at 4474.363 kb on + strand, within Psyr_3757 at 4474.364 kb on - strand, within Psyr_3757 at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.457 kb on - strand at 4474.508 kb on + strand at 4474.509 kb on - strand at 4474.519 kb on - strand at 4474.550 kb on + strand at 4474.550 kb on + strand at 4474.550 kb on + strand at 4474.551 kb on - strand at 4474.551 kb on - strand at 4474.551 kb on - strand at 4474.551 kb on - strand at 4474.553 kb on + strand at 4474.554 kb on - strand at 4474.554 kb on - strand at 4474.556 kb on + strand at 4474.556 kb on + strand at 4474.556 kb on + strand at 4474.557 kb on - strand at 4474.567 kb on + strand at 4474.567 kb on + strand at 4474.567 kb on + strand at 4474.568 kb on - strand at 4474.573 kb on + strand at 4474.573 kb on + strand at 4474.573 kb on + strand at 4474.573 kb on + strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.577 kb on + strand at 4474.577 kb on + strand at 4474.577 kb on + strand at 4474.577 kb on + strand at 4474.578 kb on - strand at 4474.578 kb on - strand at 4474.578 kb on - strand at 4474.578 kb on - strand at 4474.578 kb on - strand at 4474.708 kb on + strand at 4474.708 kb on + strand at 4474.921 kb on + strand, within Psyr_3758 at 4475.069 kb on + strand, within Psyr_3758 at 4475.069 kb on + strand at 4475.070 kb on - strand, within Psyr_3758 at 4475.071 kb on + strand, within Psyr_3758 at 4475.072 kb on - strand, within Psyr_3758 at 4475.203 kb on + strand, within Psyr_3758 at 4475.204 kb on - strand, within Psyr_3758 at 4475.204 kb on - strand, within Psyr_3758 at 4475.204 kb on - strand, within Psyr_3758 at 4475.251 kb on + strand, within Psyr_3758 at 4475.252 kb on - strand, within Psyr_3758 at 4475.252 kb on - strand, within Psyr_3758 at 4475.272 kb on + strand, within Psyr_3758 at 4475.272 kb on + strand, within Psyr_3758 at 4475.272 kb on + strand, within Psyr_3758 at 4475.273 kb on - strand, within Psyr_3758 at 4475.273 kb on - strand, within Psyr_3758 at 4475.281 kb on + strand, within Psyr_3758 at 4475.281 kb on + strand, within Psyr_3758 at 4475.282 kb on - strand, within Psyr_3758 at 4475.284 kb on + strand, within Psyr_3758 at 4475.284 kb on + strand, within Psyr_3758 at 4475.285 kb on - strand, within Psyr_3758 at 4475.285 kb on - strand, within Psyr_3758 at 4475.285 kb on - strand, within Psyr_3758 at 4475.465 kb on - strand, within Psyr_3758 at 4475.465 kb on - strand, within Psyr_3758 at 4475.520 kb on + strand at 4475.521 kb on - strand at 4475.889 kb on + strand at 4475.889 kb on + strand at 4475.889 kb on + strand at 4475.889 kb on + strand at 4475.889 kb on + strand at 4475.890 kb on - strand at 4475.891 kb on + strand at 4475.891 kb on + strand at 4475.892 kb on - strand at 4475.892 kb on - strand at 4476.087 kb on + strand at 4476.087 kb on + strand at 4476.088 kb on - strand at 4476.089 kb on + strand at 4476.089 kb on + strand at 4476.090 kb on - strand at 4476.099 kb on - strand at 4476.145 kb on + strand at 4476.219 kb on - strand at 4476.264 kb on + strand at 4476.264 kb on + strand at 4476.264 kb on + strand at 4476.265 kb on - strand at 4476.265 kb on - strand at 4476.265 kb on - strand at 4476.325 kb on + strand at 4476.394 kb on + strand at 4476.395 kb on - strand at 4476.432 kb on + strand at 4476.432 kb on + strand at 4476.432 kb on + strand at 4476.432 kb on + strand at 4476.433 kb on - strand at 4476.433 kb on - strand at 4476.434 kb on + strand at 4476.474 kb on + strand at 4476.474 kb on + strand at 4476.474 kb on + strand at 4476.475 kb on - strand at 4476.475 kb on - strand at 4476.475 kb on - strand at 4476.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 4,473,767 + Psyr_3756 0.76 -1.8 4,473,767 + Psyr_3756 0.76 -1.5 4,473,767 + Psyr_3756 0.76 -0.5 4,473,767 + Psyr_3756 0.76 +0.4 4,473,767 + Psyr_3756 0.76 +1.5 4,473,767 + Psyr_3756 0.76 -1.3 4,473,767 + Psyr_3756 0.76 -1.9 4,473,767 + Psyr_3756 0.76 +0.1 4,473,767 + Psyr_3756 0.76 +0.1 4,473,767 + Psyr_3756 0.76 -1.2 4,473,768 - Psyr_3756 0.76 -1.4 4,473,768 - Psyr_3756 0.76 -1.4 4,473,768 - +0.4 4,473,768 - Psyr_3756 0.76 +0.6 4,473,824 - Psyr_3756 0.79 -0.0 4,473,842 + Psyr_3756 0.81 -0.9 4,473,843 - Psyr_3756 0.81 +0.5 4,473,843 - Psyr_3756 0.81 +0.0 4,473,869 + Psyr_3756 0.82 -0.0 4,473,870 - Psyr_3756 0.82 -0.2 4,473,870 - Psyr_3756 0.82 -1.8 4,473,870 - Psyr_3756 0.82 -1.1 4,473,870 - Psyr_3756 0.82 -0.7 4,473,885 + Psyr_3756 0.83 -1.0 4,473,911 + Psyr_3756 0.85 -0.2 4,473,911 + Psyr_3756 0.85 -0.5 4,473,911 + Psyr_3756 0.85 -1.3 4,473,911 + Psyr_3756 0.85 -0.2 4,473,911 + Psyr_3756 0.85 +0.6 4,473,912 - Psyr_3756 0.85 -1.6 4,473,912 - Psyr_3756 0.85 +1.1 4,473,912 - Psyr_3756 0.85 +0.3 4,473,912 - Psyr_3756 0.85 +0.5 4,473,912 - Psyr_3756 0.85 -0.6 4,473,912 - Psyr_3756 0.85 -0.5 4,473,912 - Psyr_3756 0.85 +0.0 4,473,912 - Psyr_3756 0.85 +0.2 4,473,912 - Psyr_3756 0.85 +0.2 4,473,968 + Psyr_3756 0.88 -1.3 4,473,968 + Psyr_3756 0.88 +0.6 4,473,968 + Psyr_3756 0.88 +0.7 4,473,969 - Psyr_3756 0.88 -0.3 4,473,971 + Psyr_3756 0.88 -0.6 4,473,971 + Psyr_3756 0.88 +0.2 4,473,971 + Psyr_3756 0.88 +0.1 4,473,972 - Psyr_3756 0.88 -1.2 4,473,972 - Psyr_3756 0.88 +0.3 4,474,008 - -1.1 4,474,016 + -0.4 4,474,016 + -0.7 4,474,016 + -0.5 4,474,016 + +0.7 4,474,017 - -1.2 4,474,017 - +1.8 4,474,017 - -0.7 4,474,017 - +0.1 4,474,017 - +2.2 4,474,017 - +0.3 4,474,228 + Psyr_3757 0.21 -2.4 4,474,228 + Psyr_3757 0.21 +0.4 4,474,228 + Psyr_3757 0.21 +1.1 4,474,228 + Psyr_3757 0.21 -0.9 4,474,228 + Psyr_3757 0.21 +0.6 4,474,228 + Psyr_3757 0.21 +1.5 4,474,228 + Psyr_3757 0.21 -0.5 4,474,228 + Psyr_3757 0.21 -0.3 4,474,229 - Psyr_3757 0.22 -0.3 4,474,229 - Psyr_3757 0.22 -2.2 4,474,229 - Psyr_3757 0.22 +2.1 4,474,229 - Psyr_3757 0.22 -1.3 4,474,229 - Psyr_3757 0.22 -0.1 4,474,229 - Psyr_3757 0.22 -0.3 4,474,229 - Psyr_3757 0.22 +0.3 4,474,229 - Psyr_3757 0.22 +0.8 4,474,229 - Psyr_3757 0.22 +0.3 4,474,229 - Psyr_3757 0.22 +0.4 4,474,229 - Psyr_3757 0.22 -0.0 4,474,229 - Psyr_3757 0.22 +0.9 4,474,229 - Psyr_3757 0.22 +0.4 4,474,242 + Psyr_3757 0.26 +0.4 4,474,290 - Psyr_3757 0.41 -0.2 4,474,308 + Psyr_3757 0.47 +0.4 4,474,308 + Psyr_3757 0.47 +0.7 4,474,308 + Psyr_3757 0.47 -0.6 4,474,309 - Psyr_3757 0.47 +0.1 4,474,309 - Psyr_3757 0.47 -1.5 4,474,309 - Psyr_3757 0.47 +0.6 4,474,363 + Psyr_3757 0.65 -2.6 4,474,364 - Psyr_3757 0.65 +0.8 4,474,456 + +0.2 4,474,456 + -0.9 4,474,456 + -3.8 4,474,456 + +0.3 4,474,456 + -2.6 4,474,456 + -0.5 4,474,456 + -0.5 4,474,457 - +1.0 4,474,508 + +0.0 4,474,509 - -1.4 4,474,519 - -2.2 4,474,550 + -1.9 4,474,550 + -1.2 4,474,550 + -0.4 4,474,551 - +0.1 4,474,551 - -1.0 4,474,551 - +0.8 4,474,551 - +1.9 4,474,553 + -1.2 4,474,554 - -0.0 4,474,554 - -1.8 4,474,556 + +0.1 4,474,556 + -1.8 4,474,556 + +0.3 4,474,557 - +0.3 4,474,567 + -1.6 4,474,567 + +0.3 4,474,567 + -0.5 4,474,568 - +0.8 4,474,573 + -1.9 4,474,573 + -1.1 4,474,573 + -1.2 4,474,573 + -0.2 4,474,574 - -2.9 4,474,574 - +0.1 4,474,574 - +0.8 4,474,574 - -0.6 4,474,574 - -0.1 4,474,574 - +0.2 4,474,574 - +1.1 4,474,574 - -0.0 4,474,574 - -0.1 4,474,577 + +0.2 4,474,577 + -2.2 4,474,577 + -0.3 4,474,577 + -1.5 4,474,578 - -1.6 4,474,578 - +0.3 4,474,578 - +0.6 4,474,578 - -0.4 4,474,578 - -1.0 4,474,708 + -0.3 4,474,708 + +0.3 4,474,921 + Psyr_3758 0.25 +0.4 4,475,069 + Psyr_3758 0.42 -0.1 4,475,069 + -1.2 4,475,070 - Psyr_3758 0.42 +0.5 4,475,071 + Psyr_3758 0.43 -0.4 4,475,072 - Psyr_3758 0.43 -2.6 4,475,203 + Psyr_3758 0.58 +2.1 4,475,204 - Psyr_3758 0.58 -0.9 4,475,204 - Psyr_3758 0.58 +3.1 4,475,204 - Psyr_3758 0.58 +1.1 4,475,251 + Psyr_3758 0.64 -0.5 4,475,252 - Psyr_3758 0.64 +1.4 4,475,252 - Psyr_3758 0.64 +2.1 4,475,272 + Psyr_3758 0.66 +1.7 4,475,272 + Psyr_3758 0.66 +1.3 4,475,272 + Psyr_3758 0.66 -0.0 4,475,273 - Psyr_3758 0.66 -0.3 4,475,273 - Psyr_3758 0.66 +1.1 4,475,281 + Psyr_3758 0.67 -1.3 4,475,281 + Psyr_3758 0.67 +1.4 4,475,282 - Psyr_3758 0.67 -0.5 4,475,284 + Psyr_3758 0.67 -0.5 4,475,284 + Psyr_3758 0.67 +0.1 4,475,285 - Psyr_3758 0.68 +2.1 4,475,285 - Psyr_3758 0.68 +1.0 4,475,285 - Psyr_3758 0.68 +1.5 4,475,465 - Psyr_3758 0.89 +0.4 4,475,465 - Psyr_3758 0.89 -0.6 4,475,520 + +0.7 4,475,521 - -1.2 4,475,889 + +0.2 4,475,889 + +1.0 4,475,889 + -1.5 4,475,889 + +1.0 4,475,889 + -0.3 4,475,890 - +1.5 4,475,891 + +0.7 4,475,891 + -1.2 4,475,892 - +0.4 4,475,892 - -0.2 4,476,087 + -2.2 4,476,087 + +0.7 4,476,088 - -0.1 4,476,089 + +0.3 4,476,089 + -0.5 4,476,090 - +0.7 4,476,099 - +2.4 4,476,145 + -0.1 4,476,219 - -0.6 4,476,264 + -2.0 4,476,264 + +1.6 4,476,264 + +0.2 4,476,265 - -0.4 4,476,265 - +2.1 4,476,265 - -2.5 4,476,325 + -1.2 4,476,394 + -1.7 4,476,395 - -0.6 4,476,432 + -0.2 4,476,432 + +0.3 4,476,432 + +2.1 4,476,432 + -1.0 4,476,433 - -2.1 4,476,433 - +0.1 4,476,434 + +2.1 4,476,474 + -0.9 4,476,474 + -1.2 4,476,474 + -1.9 4,476,475 - +0.2 4,476,475 - -0.6 4,476,475 - -0.7 4,476,475 - +0.5
Or see this region's nucleotide sequence