Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3751

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3749 and Psyr_3750 are separated by 16 nucleotidesPsyr_3750 and Psyr_3751 are separated by 56 nucleotidesPsyr_3751 and Psyr_3752 are separated by 170 nucleotidesPsyr_3752 and Psyr_3753 are separated by 305 nucleotides Psyr_3749: Psyr_3749 - Peptidase M42, at 4,468,065 to 4,469,261 _3749 Psyr_3750: Psyr_3750 - Protein of unknown function UPF0270, at 4,469,278 to 4,469,556 _3750 Psyr_3751: Psyr_3751 - Carbon storage regulator, at 4,469,613 to 4,469,807 _3751 Psyr_3752: Psyr_3752 - Protein of unknown function UPF0060, at 4,469,978 to 4,470,310 _3752 Psyr_3753: Psyr_3753 - Short-chain dehydrogenase/reductase SDR, at 4,470,616 to 4,471,500 _3753 Position (kb) 4469 4470Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4468.881 kb on + strand, within Psyr_3749at 4468.962 kb on + strand, within Psyr_3749at 4468.962 kb on + strand, within Psyr_3749at 4468.962 kb on + strand, within Psyr_3749at 4468.965 kb on + strand, within Psyr_3749at 4468.965 kb on + strand, within Psyr_3749at 4468.965 kb on + strand, within Psyr_3749at 4468.966 kb on - strand, within Psyr_3749at 4468.966 kb on - strand, within Psyr_3749at 4468.966 kb on - strand, within Psyr_3749at 4468.966 kb on - strand, within Psyr_3749at 4468.966 kb on - strand, within Psyr_3749at 4468.966 kb on - strand, within Psyr_3749at 4468.966 kb on - strand, within Psyr_3749at 4469.103 kb on + strand, within Psyr_3749at 4469.103 kb on + strand, within Psyr_3749at 4469.103 kb on + strand, within Psyr_3749at 4469.103 kb on + strand, within Psyr_3749at 4469.103 kb on + strand, within Psyr_3749at 4469.103 kb on + strand, within Psyr_3749at 4469.103 kb on + strand, within Psyr_3749at 4469.103 kb on + strand, within Psyr_3749at 4469.103 kb on + strand, within Psyr_3749at 4469.103 kb on + strand, within Psyr_3749at 4469.103 kb on + strand, within Psyr_3749at 4469.104 kb on - strandat 4469.104 kb on - strand, within Psyr_3749at 4469.104 kb on - strand, within Psyr_3749at 4469.104 kb on - strand, within Psyr_3749at 4469.104 kb on - strand, within Psyr_3749at 4469.104 kb on - strand, within Psyr_3749at 4469.107 kb on + strand, within Psyr_3749at 4469.107 kb on + strand, within Psyr_3749at 4469.107 kb on + strand, within Psyr_3749at 4469.107 kb on + strand, within Psyr_3749at 4469.107 kb on + strand, within Psyr_3749at 4469.107 kb on + strand, within Psyr_3749at 4469.108 kb on - strand, within Psyr_3749at 4469.108 kb on - strand, within Psyr_3749at 4469.108 kb on - strand, within Psyr_3749at 4469.108 kb on - strand, within Psyr_3749at 4469.108 kb on - strand, within Psyr_3749at 4469.108 kb on - strand, within Psyr_3749at 4469.297 kb on + strandat 4469.297 kb on + strandat 4469.297 kb on + strandat 4469.297 kb on + strandat 4469.297 kb on + strandat 4469.297 kb on + strandat 4469.297 kb on + strandat 4469.297 kb on + strandat 4469.298 kb on - strandat 4469.298 kb on - strandat 4469.298 kb on - strandat 4469.298 kb on - strandat 4469.298 kb on - strandat 4469.442 kb on - strand, within Psyr_3750at 4469.561 kb on + strandat 4469.561 kb on + strandat 4469.562 kb on - strandat 4469.562 kb on - strandat 4469.665 kb on + strand, within Psyr_3751at 4469.665 kb on + strand, within Psyr_3751at 4469.665 kb on + strand, within Psyr_3751at 4469.666 kb on - strand, within Psyr_3751at 4469.666 kb on - strand, within Psyr_3751at 4469.666 kb on - strand, within Psyr_3751at 4469.666 kb on - strand, within Psyr_3751at 4469.800 kb on - strandat 4469.888 kb on - strandat 4469.930 kb on + strandat 4469.931 kb on - strandat 4469.957 kb on - strandat 4470.111 kb on + strand, within Psyr_3752at 4470.111 kb on + strand, within Psyr_3752at 4470.111 kb on + strand, within Psyr_3752at 4470.111 kb on + strand, within Psyr_3752at 4470.111 kb on + strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.124 kb on - strand, within Psyr_3752at 4470.236 kb on + strand, within Psyr_3752at 4470.237 kb on - strand, within Psyr_3752at 4470.255 kb on + strand, within Psyr_3752at 4470.255 kb on + strand, within Psyr_3752at 4470.256 kb on - strand, within Psyr_3752at 4470.256 kb on - strand, within Psyr_3752at 4470.256 kb on - strand, within Psyr_3752at 4470.256 kb on - strand, within Psyr_3752at 4470.256 kb on - strand, within Psyr_3752at 4470.266 kb on + strand, within Psyr_3752at 4470.267 kb on - strand, within Psyr_3752at 4470.300 kb on + strandat 4470.300 kb on + strandat 4470.300 kb on + strandat 4470.300 kb on + strandat 4470.413 kb on + strandat 4470.677 kb on + strandat 4470.677 kb on + strandat 4470.677 kb on + strandat 4470.677 kb on + strandat 4470.678 kb on - strandat 4470.678 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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4,468,881 + Psyr_3749 0.68 +0.5
4,468,962 + Psyr_3749 0.75 -1.5
4,468,962 + Psyr_3749 0.75 -2.0
4,468,962 + Psyr_3749 0.75 -3.1
4,468,965 + Psyr_3749 0.75 +0.7
4,468,965 + Psyr_3749 0.75 -0.9
4,468,965 + Psyr_3749 0.75 +0.5
4,468,966 - Psyr_3749 0.75 +0.0
4,468,966 - Psyr_3749 0.75 +0.4
4,468,966 - Psyr_3749 0.75 -0.5
4,468,966 - Psyr_3749 0.75 -0.8
4,468,966 - Psyr_3749 0.75 -1.7
4,468,966 - Psyr_3749 0.75 -2.3
4,468,966 - Psyr_3749 0.75 -0.6
4,469,103 + Psyr_3749 0.87 -0.1
4,469,103 + Psyr_3749 0.87 +0.1
4,469,103 + Psyr_3749 0.87 +0.3
4,469,103 + Psyr_3749 0.87 -0.9
4,469,103 + Psyr_3749 0.87 -0.5
4,469,103 + Psyr_3749 0.87 +0.2
4,469,103 + Psyr_3749 0.87 -0.3
4,469,103 + Psyr_3749 0.87 -0.2
4,469,103 + Psyr_3749 0.87 +0.0
4,469,103 + Psyr_3749 0.87 -0.8
4,469,103 + Psyr_3749 0.87 -0.9
4,469,104 - -1.5
4,469,104 - Psyr_3749 0.87 -0.2
4,469,104 - Psyr_3749 0.87 +0.2
4,469,104 - Psyr_3749 0.87 +0.7
4,469,104 - Psyr_3749 0.87 -3.0
4,469,104 - Psyr_3749 0.87 +1.4
4,469,107 + Psyr_3749 0.87 +0.3
4,469,107 + Psyr_3749 0.87 +0.9
4,469,107 + Psyr_3749 0.87 +0.3
4,469,107 + Psyr_3749 0.87 -0.3
4,469,107 + Psyr_3749 0.87 -1.8
4,469,107 + Psyr_3749 0.87 -1.3
4,469,108 - Psyr_3749 0.87 +0.1
4,469,108 - Psyr_3749 0.87 +2.1
4,469,108 - Psyr_3749 0.87 +0.5
4,469,108 - Psyr_3749 0.87 -0.9
4,469,108 - Psyr_3749 0.87 +0.0
4,469,108 - Psyr_3749 0.87 -1.4
4,469,297 + -3.0
4,469,297 + +0.2
4,469,297 + +0.8
4,469,297 + -0.7
4,469,297 + +1.1
4,469,297 + +0.0
4,469,297 + -0.4
4,469,297 + -0.1
4,469,298 - +1.8
4,469,298 - +0.1
4,469,298 - +0.5
4,469,298 - +0.1
4,469,298 - -0.4
4,469,442 - Psyr_3750 0.59 +1.3
4,469,561 + +0.4
4,469,561 + -0.5
4,469,562 - +0.9
4,469,562 - -0.5
4,469,665 + Psyr_3751 0.27 +1.4
4,469,665 + Psyr_3751 0.27 -1.4
4,469,665 + Psyr_3751 0.27 -0.6
4,469,666 - Psyr_3751 0.27 -0.2
4,469,666 - Psyr_3751 0.27 +1.3
4,469,666 - Psyr_3751 0.27 +2.1
4,469,666 - Psyr_3751 0.27 +1.0
4,469,800 - +0.3
4,469,888 - -1.0
4,469,930 + +0.9
4,469,931 - -1.7
4,469,957 - -0.3
4,470,111 + Psyr_3752 0.40 +1.5
4,470,111 + Psyr_3752 0.40 +1.1
4,470,111 + Psyr_3752 0.40 -0.6
4,470,111 + Psyr_3752 0.40 -0.5
4,470,111 + Psyr_3752 0.40 -0.8
4,470,112 - Psyr_3752 0.40 -0.2
4,470,112 - Psyr_3752 0.40 -0.7
4,470,112 - Psyr_3752 0.40 +0.7
4,470,112 - Psyr_3752 0.40 -0.0
4,470,112 - Psyr_3752 0.40 -0.3
4,470,112 - Psyr_3752 0.40 -0.7
4,470,112 - Psyr_3752 0.40 -0.4
4,470,112 - Psyr_3752 0.40 -0.1
4,470,112 - Psyr_3752 0.40 -0.9
4,470,112 - Psyr_3752 0.40 +1.4
4,470,112 - Psyr_3752 0.40 +0.2
4,470,124 - Psyr_3752 0.44 -0.5
4,470,236 + Psyr_3752 0.77 +2.4
4,470,237 - Psyr_3752 0.78 -1.2
4,470,255 + Psyr_3752 0.83 +2.4
4,470,255 + Psyr_3752 0.83 +0.3
4,470,256 - Psyr_3752 0.83 -2.9
4,470,256 - Psyr_3752 0.83 +0.9
4,470,256 - Psyr_3752 0.83 -0.8
4,470,256 - Psyr_3752 0.83 -0.5
4,470,256 - Psyr_3752 0.83 +2.2
4,470,266 + Psyr_3752 0.86 -1.3
4,470,267 - Psyr_3752 0.87 -0.5
4,470,300 + +0.8
4,470,300 + +0.1
4,470,300 + -2.6
4,470,300 + +0.7
4,470,413 + -0.1
4,470,677 + -1.8
4,470,677 + -1.1
4,470,677 + +0.5
4,470,677 + -2.9
4,470,678 - +0.7
4,470,678 - -0.2

Or see this region's nucleotide sequence