Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3731 and Psyr_3732 are separated by 279 nucleotides Psyr_3732 and Psyr_3733 are separated by 180 nucleotides
Psyr_3731: Psyr_3731 - conserved hypothetical protein, at 4,438,234 to 4,439,577
_3731
Psyr_3732: Psyr_3732 - hypothetical protein, at 4,439,857 to 4,440,036
_3732
Psyr_3733: Psyr_3733 - Outer membrane autotransporter barrel, at 4,440,217 to 4,443,333
_3733
Position (kb) 4439
4440
4441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4438.952 kb on + strand, within Psyr_3731 at 4438.952 kb on + strand, within Psyr_3731 at 4438.952 kb on + strand, within Psyr_3731 at 4438.952 kb on + strand, within Psyr_3731 at 4438.952 kb on + strand, within Psyr_3731 at 4438.952 kb on + strand, within Psyr_3731 at 4438.952 kb on + strand, within Psyr_3731 at 4438.952 kb on + strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4438.953 kb on - strand, within Psyr_3731 at 4439.108 kb on + strand, within Psyr_3731 at 4439.109 kb on - strand, within Psyr_3731 at 4439.109 kb on - strand, within Psyr_3731 at 4439.109 kb on - strand, within Psyr_3731 at 4439.109 kb on - strand, within Psyr_3731 at 4439.109 kb on - strand, within Psyr_3731 at 4439.109 kb on - strand, within Psyr_3731 at 4439.109 kb on - strand, within Psyr_3731 at 4439.111 kb on + strand, within Psyr_3731 at 4439.111 kb on + strand, within Psyr_3731 at 4439.111 kb on + strand, within Psyr_3731 at 4439.111 kb on + strand, within Psyr_3731 at 4439.326 kb on + strand, within Psyr_3731 at 4439.326 kb on + strand, within Psyr_3731 at 4439.326 kb on + strand, within Psyr_3731 at 4439.327 kb on - strand, within Psyr_3731 at 4439.327 kb on - strand, within Psyr_3731 at 4439.327 kb on - strand, within Psyr_3731 at 4439.352 kb on + strand, within Psyr_3731 at 4439.352 kb on + strand, within Psyr_3731 at 4439.352 kb on + strand, within Psyr_3731 at 4439.352 kb on + strand, within Psyr_3731 at 4439.352 kb on + strand, within Psyr_3731 at 4439.353 kb on - strand, within Psyr_3731 at 4439.353 kb on - strand, within Psyr_3731 at 4439.387 kb on - strand, within Psyr_3731 at 4439.539 kb on + strand at 4439.540 kb on - strand at 4439.603 kb on + strand at 4439.625 kb on - strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.799 kb on + strand at 4439.799 kb on + strand at 4439.800 kb on - strand at 4439.801 kb on + strand at 4439.801 kb on + strand at 4439.801 kb on + strand at 4439.801 kb on + strand at 4439.801 kb on + strand at 4439.801 kb on + strand at 4439.802 kb on - strand at 4439.802 kb on - strand at 4439.802 kb on - strand at 4439.802 kb on - strand at 4439.802 kb on - strand at 4439.802 kb on - strand at 4439.837 kb on - strand at 4439.837 kb on - strand at 4439.861 kb on + strand at 4440.169 kb on + strand at 4440.169 kb on + strand at 4440.170 kb on - strand at 4440.170 kb on - strand at 4440.170 kb on - strand at 4440.178 kb on - strand at 4440.178 kb on - strand at 4440.192 kb on + strand at 4440.192 kb on + strand at 4440.284 kb on + strand at 4440.285 kb on - strand at 4440.285 kb on - strand at 4440.373 kb on + strand at 4440.373 kb on + strand at 4440.373 kb on + strand at 4440.373 kb on + strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.611 kb on + strand, within Psyr_3733 at 4440.611 kb on + strand, within Psyr_3733 at 4440.611 kb on + strand, within Psyr_3733 at 4440.612 kb on - strand, within Psyr_3733 at 4440.612 kb on - strand, within Psyr_3733 at 4440.821 kb on + strand, within Psyr_3733 at 4440.836 kb on + strand, within Psyr_3733 at 4440.836 kb on + strand, within Psyr_3733 at 4440.837 kb on - strand, within Psyr_3733
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 4,438,952 + Psyr_3731 0.53 +3.1 4,438,952 + Psyr_3731 0.53 +0.8 4,438,952 + Psyr_3731 0.53 +0.7 4,438,952 + Psyr_3731 0.53 +0.5 4,438,952 + Psyr_3731 0.53 -0.9 4,438,952 + Psyr_3731 0.53 -3.1 4,438,952 + Psyr_3731 0.53 +0.4 4,438,952 + Psyr_3731 0.53 +0.3 4,438,953 - Psyr_3731 0.53 -0.4 4,438,953 - Psyr_3731 0.53 -0.4 4,438,953 - Psyr_3731 0.53 +1.1 4,438,953 - Psyr_3731 0.53 -0.2 4,438,953 - Psyr_3731 0.53 +1.1 4,438,953 - Psyr_3731 0.53 +0.4 4,438,953 - Psyr_3731 0.53 +1.3 4,438,953 - Psyr_3731 0.53 -1.0 4,439,108 + Psyr_3731 0.65 -0.5 4,439,109 - Psyr_3731 0.65 +0.4 4,439,109 - Psyr_3731 0.65 -2.8 4,439,109 - Psyr_3731 0.65 -2.5 4,439,109 - Psyr_3731 0.65 -0.8 4,439,109 - Psyr_3731 0.65 -0.7 4,439,109 - Psyr_3731 0.65 -0.5 4,439,109 - Psyr_3731 0.65 -1.0 4,439,111 + Psyr_3731 0.65 -1.1 4,439,111 + Psyr_3731 0.65 +0.1 4,439,111 + Psyr_3731 0.65 +0.7 4,439,111 + Psyr_3731 0.65 +1.5 4,439,326 + Psyr_3731 0.81 -0.0 4,439,326 + Psyr_3731 0.81 -1.1 4,439,326 + Psyr_3731 0.81 +0.7 4,439,327 - Psyr_3731 0.81 -1.5 4,439,327 - Psyr_3731 0.81 -2.1 4,439,327 - Psyr_3731 0.81 -1.3 4,439,352 + Psyr_3731 0.83 -0.3 4,439,352 + Psyr_3731 0.83 -0.2 4,439,352 + Psyr_3731 0.83 -0.6 4,439,352 + Psyr_3731 0.83 +0.7 4,439,352 + Psyr_3731 0.83 +2.1 4,439,353 - Psyr_3731 0.83 -0.0 4,439,353 - Psyr_3731 0.83 -0.2 4,439,387 - Psyr_3731 0.86 -1.4 4,439,539 + -0.4 4,439,540 - -0.4 4,439,603 + +0.3 4,439,625 - +0.5 4,439,797 + -0.1 4,439,797 + -0.2 4,439,797 + +1.5 4,439,797 + +1.1 4,439,797 + -1.5 4,439,797 + +0.0 4,439,797 + -0.8 4,439,797 + -0.5 4,439,797 + -1.6 4,439,797 + -0.0 4,439,797 + -0.4 4,439,798 - +0.2 4,439,798 - +1.6 4,439,798 - +0.6 4,439,798 - +0.9 4,439,798 - +0.3 4,439,798 - +0.8 4,439,798 - +2.1 4,439,798 - -1.3 4,439,798 - +0.9 4,439,798 - -1.4 4,439,798 - -0.5 4,439,798 - -0.8 4,439,798 - +1.1 4,439,798 - -3.0 4,439,798 - +0.4 4,439,799 + -0.3 4,439,799 + -0.6 4,439,800 - +0.5 4,439,801 + +0.3 4,439,801 + +2.5 4,439,801 + +0.2 4,439,801 + -1.3 4,439,801 + -0.4 4,439,801 + -1.3 4,439,802 - -0.6 4,439,802 - -0.2 4,439,802 - -0.4 4,439,802 - -0.3 4,439,802 - +0.8 4,439,802 - +0.1 4,439,837 - +0.1 4,439,837 - -0.6 4,439,861 + -0.9 4,440,169 + +0.2 4,440,169 + -0.6 4,440,170 - +0.8 4,440,170 - -0.3 4,440,170 - -0.2 4,440,178 - +1.1 4,440,178 - -0.1 4,440,192 + +0.8 4,440,192 + -0.5 4,440,284 + +1.1 4,440,285 - +0.6 4,440,285 - -1.2 4,440,373 + +1.1 4,440,373 + -2.1 4,440,373 + +4.4 4,440,373 + -1.6 4,440,374 - +0.4 4,440,374 - +0.5 4,440,374 - +0.4 4,440,374 - +0.7 4,440,374 - +0.3 4,440,374 - -0.5 4,440,374 - -2.8 4,440,374 - +0.1 4,440,374 - +0.5 4,440,611 + Psyr_3733 0.13 +0.7 4,440,611 + Psyr_3733 0.13 -1.0 4,440,611 + Psyr_3733 0.13 +0.3 4,440,612 - Psyr_3733 0.13 -1.0 4,440,612 - Psyr_3733 0.13 -3.3 4,440,821 + Psyr_3733 0.19 +0.9 4,440,836 + Psyr_3733 0.20 +1.3 4,440,836 + Psyr_3733 0.20 -1.6 4,440,837 - Psyr_3733 0.20 +1.5
Or see this region's nucleotide sequence