Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3730

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3728 and Psyr_3729 are separated by 82 nucleotidesPsyr_3729 and Psyr_3730 are separated by 24 nucleotidesPsyr_3730 and Psyr_3731 are separated by 15 nucleotides Psyr_3728: Psyr_3728 - hypothetical protein, at 4,437,102 to 4,437,470 _3728 Psyr_3729: Psyr_3729 - hypothetical protein, at 4,437,553 to 4,437,909 _3729 Psyr_3730: Psyr_3730 - hypothetical protein, at 4,437,934 to 4,438,218 _3730 Psyr_3731: Psyr_3731 - conserved hypothetical protein, at 4,438,234 to 4,439,577 _3731 Position (kb) 4437 4438 4439Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4436.948 kb on - strandat 4436.977 kb on + strandat 4436.977 kb on + strandat 4436.977 kb on + strandat 4436.977 kb on + strandat 4436.977 kb on + strandat 4436.978 kb on - strandat 4436.978 kb on - strandat 4436.978 kb on - strandat 4436.978 kb on - strandat 4436.978 kb on - strandat 4436.978 kb on - strandat 4436.978 kb on - strandat 4436.981 kb on + strandat 4436.981 kb on + strandat 4436.981 kb on + strandat 4436.982 kb on - strandat 4436.982 kb on - strandat 4436.982 kb on - strandat 4437.097 kb on - strandat 4437.143 kb on + strand, within Psyr_3728at 4437.143 kb on + strand, within Psyr_3728at 4437.171 kb on + strand, within Psyr_3728at 4437.171 kb on + strand, within Psyr_3728at 4437.171 kb on + strand, within Psyr_3728at 4437.269 kb on + strand, within Psyr_3728at 4437.269 kb on + strand, within Psyr_3728at 4437.270 kb on - strand, within Psyr_3728at 4437.273 kb on + strand, within Psyr_3728at 4437.273 kb on + strand, within Psyr_3728at 4437.274 kb on - strand, within Psyr_3728at 4437.274 kb on - strand, within Psyr_3728at 4437.276 kb on + strand, within Psyr_3728at 4437.276 kb on + strand, within Psyr_3728at 4437.277 kb on - strand, within Psyr_3728at 4437.277 kb on - strand, within Psyr_3728at 4437.280 kb on + strand, within Psyr_3728at 4437.280 kb on + strand, within Psyr_3728at 4437.281 kb on - strand, within Psyr_3728at 4437.365 kb on + strand, within Psyr_3728at 4437.365 kb on + strand, within Psyr_3728at 4437.503 kb on + strandat 4437.540 kb on + strandat 4437.540 kb on + strandat 4437.541 kb on - strandat 4437.554 kb on + strandat 4437.663 kb on - strand, within Psyr_3729at 4437.705 kb on + strand, within Psyr_3729at 4437.705 kb on + strand, within Psyr_3729at 4437.705 kb on + strand, within Psyr_3729at 4437.705 kb on + strand, within Psyr_3729at 4437.706 kb on - strand, within Psyr_3729at 4437.706 kb on - strand, within Psyr_3729at 4437.706 kb on - strand, within Psyr_3729at 4437.709 kb on + strand, within Psyr_3729at 4437.710 kb on - strand, within Psyr_3729at 4437.710 kb on - strand, within Psyr_3729at 4437.783 kb on - strand, within Psyr_3729at 4437.834 kb on - strand, within Psyr_3729at 4437.841 kb on + strand, within Psyr_3729at 4437.842 kb on - strand, within Psyr_3729at 4437.861 kb on + strand, within Psyr_3729at 4437.884 kb on + strandat 4438.219 kb on - strandat 4438.260 kb on + strandat 4438.261 kb on - strandat 4438.447 kb on + strand, within Psyr_3731at 4438.448 kb on - strand, within Psyr_3731at 4438.448 kb on - strand, within Psyr_3731at 4438.476 kb on + strand, within Psyr_3731at 4438.556 kb on - strand, within Psyr_3731at 4438.594 kb on - strand, within Psyr_3731at 4438.618 kb on + strand, within Psyr_3731at 4438.618 kb on + strand, within Psyr_3731at 4438.618 kb on + strand, within Psyr_3731at 4438.618 kb on + strand, within Psyr_3731at 4438.618 kb on + strand, within Psyr_3731at 4438.619 kb on - strand, within Psyr_3731at 4438.619 kb on - strand, within Psyr_3731at 4438.619 kb on - strand, within Psyr_3731at 4438.619 kb on - strand, within Psyr_3731at 4438.619 kb on - strand, within Psyr_3731at 4438.619 kb on - strand, within Psyr_3731at 4438.654 kb on + strand, within Psyr_3731at 4438.691 kb on - strand, within Psyr_3731at 4438.691 kb on - strand, within Psyr_3731at 4438.691 kb on - strand, within Psyr_3731at 4438.691 kb on - strand, within Psyr_3731at 4438.705 kb on + strand, within Psyr_3731at 4438.705 kb on + strand, within Psyr_3731at 4438.705 kb on + strand, within Psyr_3731at 4438.706 kb on - strand, within Psyr_3731at 4438.952 kb on + strand, within Psyr_3731at 4438.952 kb on + strand, within Psyr_3731at 4438.952 kb on + strand, within Psyr_3731at 4438.952 kb on + strand, within Psyr_3731at 4438.952 kb on + strand, within Psyr_3731at 4438.952 kb on + strand, within Psyr_3731at 4438.952 kb on + strand, within Psyr_3731at 4438.952 kb on + strand, within Psyr_3731at 4438.953 kb on - strand, within Psyr_3731at 4438.953 kb on - strand, within Psyr_3731at 4438.953 kb on - strand, within Psyr_3731at 4438.953 kb on - strand, within Psyr_3731at 4438.953 kb on - strand, within Psyr_3731at 4438.953 kb on - strand, within Psyr_3731at 4438.953 kb on - strand, within Psyr_3731at 4438.953 kb on - strand, within Psyr_3731at 4439.108 kb on + strand, within Psyr_3731at 4439.109 kb on - strand, within Psyr_3731at 4439.109 kb on - strand, within Psyr_3731at 4439.109 kb on - strand, within Psyr_3731at 4439.109 kb on - strand, within Psyr_3731at 4439.109 kb on - strand, within Psyr_3731at 4439.109 kb on - strand, within Psyr_3731at 4439.109 kb on - strand, within Psyr_3731at 4439.111 kb on + strand, within Psyr_3731at 4439.111 kb on + strand, within Psyr_3731at 4439.111 kb on + strand, within Psyr_3731at 4439.111 kb on + strand, within Psyr_3731

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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4,436,948 - -0.4
4,436,977 + -1.8
4,436,977 + +0.4
4,436,977 + -1.4
4,436,977 + -0.8
4,436,977 + -0.6
4,436,978 - -0.7
4,436,978 - -0.4
4,436,978 - -1.1
4,436,978 - +0.1
4,436,978 - +0.3
4,436,978 - -1.1
4,436,978 - -1.0
4,436,981 + +4.4
4,436,981 + -0.0
4,436,981 + -0.5
4,436,982 - -1.2
4,436,982 - -2.0
4,436,982 - +0.8
4,437,097 - -0.2
4,437,143 + Psyr_3728 0.11 -0.2
4,437,143 + Psyr_3728 0.11 -1.7
4,437,171 + Psyr_3728 0.19 -2.7
4,437,171 + Psyr_3728 0.19 -0.6
4,437,171 + Psyr_3728 0.19 +0.6
4,437,269 + Psyr_3728 0.45 +0.5
4,437,269 + Psyr_3728 0.45 -0.2
4,437,270 - Psyr_3728 0.46 -0.1
4,437,273 + Psyr_3728 0.46 -3.0
4,437,273 + Psyr_3728 0.46 +0.4
4,437,274 - Psyr_3728 0.47 +1.5
4,437,274 - Psyr_3728 0.47 -0.5
4,437,276 + Psyr_3728 0.47 -0.9
4,437,276 + Psyr_3728 0.47 +1.3
4,437,277 - Psyr_3728 0.47 -2.5
4,437,277 - Psyr_3728 0.47 -0.5
4,437,280 + Psyr_3728 0.48 -0.5
4,437,280 + Psyr_3728 0.48 -0.1
4,437,281 - Psyr_3728 0.49 +0.7
4,437,365 + Psyr_3728 0.71 +0.5
4,437,365 + Psyr_3728 0.71 -1.0
4,437,503 + +0.5
4,437,540 + -1.7
4,437,540 + -1.4
4,437,541 - -1.3
4,437,554 + -0.3
4,437,663 - Psyr_3729 0.31 -1.0
4,437,705 + Psyr_3729 0.43 +1.6
4,437,705 + Psyr_3729 0.43 -1.1
4,437,705 + Psyr_3729 0.43 -0.4
4,437,705 + Psyr_3729 0.43 -1.2
4,437,706 - Psyr_3729 0.43 -0.9
4,437,706 - Psyr_3729 0.43 -1.4
4,437,706 - Psyr_3729 0.43 +0.1
4,437,709 + Psyr_3729 0.44 -1.7
4,437,710 - Psyr_3729 0.44 +1.1
4,437,710 - Psyr_3729 0.44 +1.5
4,437,783 - Psyr_3729 0.64 +1.3
4,437,834 - Psyr_3729 0.79 +0.8
4,437,841 + Psyr_3729 0.81 -0.9
4,437,842 - Psyr_3729 0.81 -1.5
4,437,861 + Psyr_3729 0.86 -1.2
4,437,884 + -0.3
4,438,219 - +0.6
4,438,260 + -0.3
4,438,261 - -1.6
4,438,447 + Psyr_3731 0.16 -0.9
4,438,448 - Psyr_3731 0.16 +0.4
4,438,448 - Psyr_3731 0.16 -1.3
4,438,476 + Psyr_3731 0.18 -0.2
4,438,556 - Psyr_3731 0.24 -3.3
4,438,594 - Psyr_3731 0.27 +0.6
4,438,618 + Psyr_3731 0.29 -1.0
4,438,618 + Psyr_3731 0.29 -2.5
4,438,618 + Psyr_3731 0.29 -2.8
4,438,618 + Psyr_3731 0.29 +0.8
4,438,618 + Psyr_3731 0.29 +0.5
4,438,619 - Psyr_3731 0.29 +0.2
4,438,619 - Psyr_3731 0.29 +2.1
4,438,619 - Psyr_3731 0.29 -1.8
4,438,619 - Psyr_3731 0.29 -1.4
4,438,619 - Psyr_3731 0.29 -0.9
4,438,619 - Psyr_3731 0.29 +0.0
4,438,654 + Psyr_3731 0.31 -2.6
4,438,691 - Psyr_3731 0.34 +1.1
4,438,691 - Psyr_3731 0.34 -0.3
4,438,691 - Psyr_3731 0.34 +0.8
4,438,691 - Psyr_3731 0.34 -0.5
4,438,705 + Psyr_3731 0.35 +1.1
4,438,705 + Psyr_3731 0.35 +0.6
4,438,705 + Psyr_3731 0.35 +1.8
4,438,706 - Psyr_3731 0.35 -0.0
4,438,952 + Psyr_3731 0.53 +3.1
4,438,952 + Psyr_3731 0.53 +0.8
4,438,952 + Psyr_3731 0.53 +0.7
4,438,952 + Psyr_3731 0.53 +0.5
4,438,952 + Psyr_3731 0.53 -0.9
4,438,952 + Psyr_3731 0.53 -3.1
4,438,952 + Psyr_3731 0.53 +0.4
4,438,952 + Psyr_3731 0.53 +0.3
4,438,953 - Psyr_3731 0.53 -0.4
4,438,953 - Psyr_3731 0.53 -0.4
4,438,953 - Psyr_3731 0.53 +1.1
4,438,953 - Psyr_3731 0.53 -0.2
4,438,953 - Psyr_3731 0.53 +1.1
4,438,953 - Psyr_3731 0.53 +0.4
4,438,953 - Psyr_3731 0.53 +1.3
4,438,953 - Psyr_3731 0.53 -1.0
4,439,108 + Psyr_3731 0.65 -0.5
4,439,109 - Psyr_3731 0.65 +0.4
4,439,109 - Psyr_3731 0.65 -2.8
4,439,109 - Psyr_3731 0.65 -2.5
4,439,109 - Psyr_3731 0.65 -0.8
4,439,109 - Psyr_3731 0.65 -0.7
4,439,109 - Psyr_3731 0.65 -0.5
4,439,109 - Psyr_3731 0.65 -1.0
4,439,111 + Psyr_3731 0.65 -1.1
4,439,111 + Psyr_3731 0.65 +0.1
4,439,111 + Psyr_3731 0.65 +0.7
4,439,111 + Psyr_3731 0.65 +1.5

Or see this region's nucleotide sequence