Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3697 and Psyr_3698 are separated by 211 nucleotides Psyr_3698 and Psyr_3699 are separated by 80 nucleotides Psyr_3699 and Psyr_3700 overlap by 4 nucleotides
Psyr_3697: Psyr_3697 - cysteine synthase, at 4,384,397 to 4,385,338
_3697
Psyr_3698: Psyr_3698 - Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt, at 4,385,550 to 4,388,303
_3698
Psyr_3699: Psyr_3699 - conserved hypothetical protein, at 4,388,384 to 4,388,821
_3699
Psyr_3700: Psyr_3700 - Protein of unknown function DUF306, at 4,388,818 to 4,389,225
_3700
Position (kb) 4385
4386
4387
4388
4389 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4385.334 kb on - strand at 4385.334 kb on - strand at 4385.338 kb on + strand at 4385.433 kb on + strand at 4385.434 kb on - strand at 4385.434 kb on - strand at 4385.434 kb on - strand at 4385.441 kb on + strand at 4385.441 kb on + strand at 4385.441 kb on + strand at 4385.441 kb on + strand at 4385.441 kb on + strand at 4385.441 kb on + strand at 4385.441 kb on + strand at 4385.441 kb on + strand at 4385.442 kb on - strand at 4385.442 kb on - strand at 4385.442 kb on - strand at 4385.442 kb on - strand at 4385.442 kb on - strand at 4385.461 kb on - strand at 4385.461 kb on - strand at 4385.515 kb on - strand at 4385.528 kb on + strand at 4385.528 kb on + strand at 4385.529 kb on - strand at 4385.529 kb on - strand at 4385.529 kb on - strand at 4385.569 kb on + strand at 4385.569 kb on + strand at 4385.570 kb on - strand at 4385.570 kb on - strand at 4385.570 kb on - strand at 4385.570 kb on - strand at 4385.594 kb on + strand at 4385.594 kb on + strand at 4385.594 kb on + strand at 4385.594 kb on + strand at 4385.595 kb on - strand at 4385.634 kb on + strand at 4385.634 kb on + strand at 4385.634 kb on + strand at 4385.749 kb on + strand at 4385.749 kb on + strand at 4385.749 kb on + strand at 4385.750 kb on - strand at 4385.750 kb on - strand at 4385.750 kb on - strand at 4385.750 kb on - strand at 4385.750 kb on - strand at 4386.016 kb on + strand, within Psyr_3698 at 4386.029 kb on + strand, within Psyr_3698 at 4386.030 kb on - strand, within Psyr_3698 at 4386.513 kb on + strand, within Psyr_3698 at 4386.514 kb on - strand, within Psyr_3698 at 4386.514 kb on - strand, within Psyr_3698 at 4387.115 kb on + strand, within Psyr_3698 at 4387.223 kb on + strand, within Psyr_3698 at 4387.431 kb on + strand, within Psyr_3698 at 4387.431 kb on + strand, within Psyr_3698 at 4387.431 kb on + strand, within Psyr_3698 at 4387.432 kb on - strand, within Psyr_3698 at 4387.854 kb on + strand, within Psyr_3698 at 4387.854 kb on + strand, within Psyr_3698 at 4387.855 kb on - strand, within Psyr_3698 at 4388.113 kb on + strand at 4388.113 kb on + strand at 4388.113 kb on + strand at 4388.113 kb on + strand at 4388.113 kb on + strand at 4388.113 kb on + strand at 4388.113 kb on + strand at 4388.113 kb on + strand at 4388.113 kb on + strand at 4388.114 kb on - strand at 4388.114 kb on - strand at 4388.114 kb on - strand at 4388.114 kb on - strand at 4388.114 kb on - strand at 4388.114 kb on - strand at 4388.357 kb on + strand at 4388.357 kb on + strand at 4388.358 kb on - strand at 4388.612 kb on - strand, within Psyr_3699 at 4388.700 kb on + strand, within Psyr_3699 at 4388.871 kb on + strand, within Psyr_3700 at 4388.871 kb on + strand, within Psyr_3700 at 4388.871 kb on + strand, within Psyr_3700 at 4388.871 kb on + strand, within Psyr_3700 at 4388.872 kb on - strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.908 kb on + strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.909 kb on - strand, within Psyr_3700 at 4388.912 kb on + strand, within Psyr_3700 at 4388.912 kb on + strand, within Psyr_3700 at 4388.913 kb on - strand, within Psyr_3700 at 4389.027 kb on + strand, within Psyr_3700 at 4389.027 kb on + strand, within Psyr_3700 at 4389.118 kb on - strand, within Psyr_3700 at 4389.118 kb on - strand, within Psyr_3700 at 4389.150 kb on + strand, within Psyr_3700 at 4389.219 kb on + strand at 4389.219 kb on + strand at 4389.220 kb on - strand at 4389.220 kb on - strand at 4389.229 kb on + strand at 4389.229 kb on + strand at 4389.229 kb on + strand at 4389.229 kb on + strand at 4389.230 kb on - strand at 4389.230 kb on - strand at 4389.230 kb on - strand at 4389.233 kb on + strand at 4389.233 kb on + strand at 4389.234 kb on - strand at 4389.234 kb on - strand at 4389.254 kb on - strand at 4389.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 4,385,334 - +0.3 4,385,334 - -0.1 4,385,338 + +2.9 4,385,433 + -0.2 4,385,434 - +1.1 4,385,434 - +0.8 4,385,434 - +0.3 4,385,441 + +1.3 4,385,441 + +0.2 4,385,441 + +0.8 4,385,441 + -2.1 4,385,441 + +1.1 4,385,441 + -0.2 4,385,441 + -1.0 4,385,441 + -1.2 4,385,442 - -0.9 4,385,442 - -1.7 4,385,442 - -0.7 4,385,442 - +0.8 4,385,442 - +0.7 4,385,461 - +1.0 4,385,461 - +2.4 4,385,515 - -0.9 4,385,528 + +1.1 4,385,528 + -1.3 4,385,529 - -0.8 4,385,529 - -0.9 4,385,529 - -0.5 4,385,569 + -0.9 4,385,569 + +0.7 4,385,570 - +0.1 4,385,570 - -1.0 4,385,570 - +0.1 4,385,570 - -0.0 4,385,594 + -0.9 4,385,594 + -2.3 4,385,594 + -1.5 4,385,594 + -0.2 4,385,595 - -0.2 4,385,634 + -4.3 4,385,634 + -1.9 4,385,634 + -0.1 4,385,749 + -2.5 4,385,749 + -0.8 4,385,749 + -3.4 4,385,750 - -1.8 4,385,750 - -2.1 4,385,750 - -0.8 4,385,750 - -0.1 4,385,750 - -1.1 4,386,016 + Psyr_3698 0.17 -2.8 4,386,029 + Psyr_3698 0.17 -0.4 4,386,030 - Psyr_3698 0.17 -2.8 4,386,513 + Psyr_3698 0.35 -0.8 4,386,514 - Psyr_3698 0.35 -1.6 4,386,514 - Psyr_3698 0.35 +0.3 4,387,115 + Psyr_3698 0.57 -1.4 4,387,223 + Psyr_3698 0.61 -0.6 4,387,431 + Psyr_3698 0.68 -2.8 4,387,431 + Psyr_3698 0.68 -0.1 4,387,431 + Psyr_3698 0.68 -0.9 4,387,432 - Psyr_3698 0.68 -1.2 4,387,854 + Psyr_3698 0.84 -2.6 4,387,854 + Psyr_3698 0.84 -2.0 4,387,855 - Psyr_3698 0.84 +0.5 4,388,113 + +0.1 4,388,113 + -3.2 4,388,113 + -3.0 4,388,113 + -2.6 4,388,113 + -2.0 4,388,113 + -0.7 4,388,113 + -0.9 4,388,113 + -0.4 4,388,113 + -2.6 4,388,114 - -0.3 4,388,114 - -0.2 4,388,114 - -2.4 4,388,114 - -2.5 4,388,114 - +1.1 4,388,114 - -1.9 4,388,357 + +0.6 4,388,357 + -0.6 4,388,358 - -1.0 4,388,612 - Psyr_3699 0.52 -1.2 4,388,700 + Psyr_3699 0.72 +0.2 4,388,871 + Psyr_3700 0.13 +1.3 4,388,871 + Psyr_3700 0.13 -1.8 4,388,871 + Psyr_3700 0.13 +0.5 4,388,871 + Psyr_3700 0.13 +2.3 4,388,872 - Psyr_3700 0.13 +1.1 4,388,908 + Psyr_3700 0.22 -1.2 4,388,908 + Psyr_3700 0.22 +0.9 4,388,908 + Psyr_3700 0.22 -0.6 4,388,908 + Psyr_3700 0.22 +0.7 4,388,908 + Psyr_3700 0.22 +0.6 4,388,908 + Psyr_3700 0.22 -0.3 4,388,908 + Psyr_3700 0.22 +2.5 4,388,908 + Psyr_3700 0.22 +0.7 4,388,908 + Psyr_3700 0.22 -0.3 4,388,908 + Psyr_3700 0.22 +1.9 4,388,908 + Psyr_3700 0.22 -0.9 4,388,908 + Psyr_3700 0.22 +0.8 4,388,908 + Psyr_3700 0.22 +0.1 4,388,908 + Psyr_3700 0.22 -0.5 4,388,908 + Psyr_3700 0.22 -2.1 4,388,909 - Psyr_3700 0.22 -1.4 4,388,909 - Psyr_3700 0.22 +1.1 4,388,909 - Psyr_3700 0.22 +0.2 4,388,909 - Psyr_3700 0.22 +0.0 4,388,909 - Psyr_3700 0.22 -2.6 4,388,909 - Psyr_3700 0.22 +1.3 4,388,909 - Psyr_3700 0.22 -1.5 4,388,909 - Psyr_3700 0.22 +0.8 4,388,909 - Psyr_3700 0.22 -0.7 4,388,909 - Psyr_3700 0.22 +4.1 4,388,909 - Psyr_3700 0.22 +0.7 4,388,909 - Psyr_3700 0.22 -0.5 4,388,912 + Psyr_3700 0.23 -0.5 4,388,912 + Psyr_3700 0.23 +1.9 4,388,913 - Psyr_3700 0.23 -0.2 4,389,027 + Psyr_3700 0.51 -0.6 4,389,027 + Psyr_3700 0.51 -1.8 4,389,118 - Psyr_3700 0.74 +0.2 4,389,118 - Psyr_3700 0.74 -0.1 4,389,150 + Psyr_3700 0.81 +0.1 4,389,219 + -3.3 4,389,219 + +0.6 4,389,220 - -2.2 4,389,220 - +0.9 4,389,229 + +0.1 4,389,229 + +2.1 4,389,229 + -1.6 4,389,229 + +1.3 4,389,230 - +1.3 4,389,230 - -1.9 4,389,230 - -0.5 4,389,233 + -1.0 4,389,233 + +0.4 4,389,234 - -0.4 4,389,234 - -1.8 4,389,254 - -1.1 4,389,254 - -1.4
Or see this region's nucleotide sequence