Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3691 and Psyr_3692 are separated by 746 nucleotides Psyr_3692 and Psyr_3693 are separated by 78 nucleotides Psyr_3693 and Psyr_3694 are separated by 30 nucleotides
Psyr_3691: Psyr_3691 - conserved hypothetical protein, at 4,377,391 to 4,378,104
_3691
Psyr_3692: Psyr_3692 - conserved hypothetical protein, at 4,378,851 to 4,379,030
_3692
Psyr_3693: Psyr_3693 - conserved hypothetical protein, at 4,379,109 to 4,379,648
_3693
Psyr_3694: Psyr_3694 - MazG, bacterial, at 4,379,679 to 4,380,512
_3694
Position (kb) 4378
4379
4380 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4377.868 kb on + strand, within Psyr_3691 at 4377.869 kb on - strand, within Psyr_3691 at 4377.869 kb on - strand, within Psyr_3691 at 4377.869 kb on - strand, within Psyr_3691 at 4377.945 kb on - strand, within Psyr_3691 at 4378.003 kb on + strand, within Psyr_3691 at 4378.004 kb on - strand, within Psyr_3691 at 4378.048 kb on + strand at 4378.048 kb on + strand at 4378.048 kb on + strand at 4378.048 kb on + strand at 4378.048 kb on + strand at 4378.049 kb on - strand at 4378.049 kb on - strand at 4378.186 kb on - strand at 4378.297 kb on - strand at 4378.406 kb on + strand at 4378.406 kb on + strand at 4378.406 kb on + strand at 4378.407 kb on - strand at 4378.407 kb on - strand at 4378.521 kb on - strand at 4378.521 kb on - strand at 4378.679 kb on - strand at 4378.679 kb on - strand at 4378.679 kb on - strand at 4378.745 kb on + strand at 4378.746 kb on - strand at 4378.749 kb on + strand at 4378.750 kb on - strand at 4378.762 kb on - strand at 4378.774 kb on - strand at 4378.844 kb on + strand at 4378.844 kb on + strand at 4378.844 kb on + strand at 4378.844 kb on + strand at 4378.845 kb on - strand at 4378.845 kb on - strand at 4378.847 kb on + strand at 4378.847 kb on + strand at 4378.847 kb on + strand at 4378.847 kb on + strand at 4378.847 kb on + strand at 4378.847 kb on + strand at 4378.848 kb on - strand at 4378.848 kb on - strand at 4378.848 kb on - strand at 4378.848 kb on - strand at 4378.848 kb on - strand at 4378.848 kb on - strand at 4378.848 kb on - strand at 4378.850 kb on + strand at 4378.850 kb on + strand at 4378.850 kb on + strand at 4378.850 kb on + strand at 4378.850 kb on + strand at 4378.850 kb on + strand at 4378.850 kb on + strand at 4378.850 kb on + strand at 4378.851 kb on - strand at 4378.851 kb on - strand at 4378.851 kb on - strand at 4378.851 kb on - strand at 4378.851 kb on - strand at 4378.851 kb on - strand at 4378.851 kb on - strand at 4378.851 kb on - strand at 4378.865 kb on + strand at 4378.865 kb on + strand at 4378.866 kb on - strand at 4378.986 kb on + strand, within Psyr_3692 at 4378.987 kb on - strand, within Psyr_3692 at 4378.988 kb on + strand, within Psyr_3692 at 4379.110 kb on + strand at 4379.137 kb on + strand at 4379.356 kb on + strand, within Psyr_3693 at 4379.356 kb on + strand, within Psyr_3693 at 4379.356 kb on + strand, within Psyr_3693 at 4379.357 kb on - strand, within Psyr_3693 at 4379.357 kb on - strand, within Psyr_3693 at 4379.357 kb on - strand, within Psyr_3693 at 4379.357 kb on - strand, within Psyr_3693 at 4379.357 kb on - strand, within Psyr_3693 at 4379.357 kb on - strand, within Psyr_3693 at 4379.359 kb on + strand, within Psyr_3693 at 4379.359 kb on + strand, within Psyr_3693 at 4379.360 kb on - strand, within Psyr_3693 at 4379.360 kb on - strand, within Psyr_3693 at 4379.653 kb on + strand at 4379.654 kb on - strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.663 kb on + strand at 4379.663 kb on + strand at 4379.663 kb on + strand at 4379.664 kb on - strand at 4379.664 kb on - strand at 4379.763 kb on - strand, within Psyr_3694
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 4,377,868 + Psyr_3691 0.67 +0.3 4,377,869 - Psyr_3691 0.67 -2.1 4,377,869 - Psyr_3691 0.67 +1.2 4,377,869 - Psyr_3691 0.67 +1.8 4,377,945 - Psyr_3691 0.78 +0.2 4,378,003 + Psyr_3691 0.86 -0.1 4,378,004 - Psyr_3691 0.86 -0.8 4,378,048 + -0.5 4,378,048 + +0.6 4,378,048 + +0.6 4,378,048 + -3.6 4,378,048 + +0.7 4,378,049 - +0.5 4,378,049 - -1.5 4,378,186 - -1.2 4,378,297 - +0.5 4,378,406 + +0.4 4,378,406 + +0.2 4,378,406 + +0.5 4,378,407 - +0.7 4,378,407 - -1.1 4,378,521 - +1.5 4,378,521 - -0.2 4,378,679 - +1.1 4,378,679 - +0.1 4,378,679 - +0.1 4,378,745 + -0.5 4,378,746 - +1.8 4,378,749 + -0.6 4,378,750 - +1.7 4,378,762 - +0.8 4,378,774 - -0.9 4,378,844 + -1.0 4,378,844 + +1.4 4,378,844 + -0.5 4,378,844 + +0.1 4,378,845 - +1.7 4,378,845 - -0.8 4,378,847 + -0.0 4,378,847 + +3.4 4,378,847 + +1.1 4,378,847 + -2.4 4,378,847 + -0.7 4,378,847 + +0.6 4,378,848 - +0.7 4,378,848 - +0.5 4,378,848 - -0.8 4,378,848 - -1.6 4,378,848 - -0.5 4,378,848 - -0.2 4,378,848 - +1.7 4,378,850 + -0.7 4,378,850 + -0.4 4,378,850 + -0.2 4,378,850 + -0.8 4,378,850 + -0.0 4,378,850 + -2.6 4,378,850 + -1.2 4,378,850 + +0.1 4,378,851 - +0.2 4,378,851 - +0.1 4,378,851 - +0.1 4,378,851 - +0.1 4,378,851 - -0.6 4,378,851 - +1.1 4,378,851 - +0.9 4,378,851 - +0.6 4,378,865 + -2.3 4,378,865 + -1.5 4,378,866 - -0.7 4,378,986 + Psyr_3692 0.75 -0.1 4,378,987 - Psyr_3692 0.76 -1.9 4,378,988 + Psyr_3692 0.76 -1.1 4,379,110 + +0.8 4,379,137 + -0.2 4,379,356 + Psyr_3693 0.46 +2.1 4,379,356 + Psyr_3693 0.46 -0.0 4,379,356 + Psyr_3693 0.46 +0.3 4,379,357 - Psyr_3693 0.46 +1.1 4,379,357 - Psyr_3693 0.46 +0.3 4,379,357 - Psyr_3693 0.46 -1.5 4,379,357 - Psyr_3693 0.46 -1.2 4,379,357 - Psyr_3693 0.46 -2.2 4,379,357 - Psyr_3693 0.46 +0.2 4,379,359 + Psyr_3693 0.46 +0.7 4,379,359 + Psyr_3693 0.46 -4.2 4,379,360 - Psyr_3693 0.46 -0.3 4,379,360 - Psyr_3693 0.46 +0.8 4,379,653 + +2.3 4,379,654 - +0.8 4,379,661 + -1.0 4,379,661 + +0.3 4,379,661 + -0.1 4,379,661 + +1.5 4,379,661 + +0.4 4,379,661 + -1.7 4,379,661 + -0.5 4,379,661 + -1.0 4,379,661 + +0.1 4,379,661 + -0.2 4,379,661 + +0.6 4,379,661 + -1.1 4,379,662 - +2.4 4,379,662 - +0.8 4,379,662 - -0.7 4,379,662 - -0.4 4,379,662 - +0.9 4,379,662 - +1.0 4,379,662 - +0.8 4,379,662 - -0.4 4,379,662 - -0.4 4,379,663 + -0.1 4,379,663 + +0.2 4,379,663 + -2.2 4,379,664 - -0.2 4,379,664 - -0.6 4,379,763 - Psyr_3694 0.10 +0.4
Or see this region's nucleotide sequence