Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3598 and Psyr_3599 are separated by 257 nucleotides Psyr_3599 and Psyr_3600 are separated by 65 nucleotides
Psyr_3598: Psyr_3598 - Binding-protein-dependent transport systems inner membrane component, at 4,279,077 to 4,279,934
_3598
Psyr_3599: Psyr_3599 - Alkanesulfonate monooxygenase, at 4,280,192 to 4,281,280
_3599
Psyr_3600: Psyr_3600 - transcriptional regulator, LysR family, at 4,281,346 to 4,282,314
_3600
Position (kb) 4280
4281
4282 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 4279.287 kb on - strand, within Psyr_3598 at 4279.298 kb on - strand, within Psyr_3598 at 4279.938 kb on + strand at 4279.938 kb on + strand at 4279.938 kb on + strand at 4279.939 kb on - strand at 4279.939 kb on - strand at 4279.939 kb on - strand at 4279.939 kb on - strand at 4279.939 kb on - strand at 4279.939 kb on - strand at 4279.982 kb on - strand at 4280.100 kb on - strand at 4280.213 kb on + strand at 4280.213 kb on + strand at 4280.213 kb on + strand at 4280.213 kb on + strand at 4280.214 kb on - strand at 4280.440 kb on + strand, within Psyr_3599 at 4280.446 kb on - strand, within Psyr_3599 at 4280.503 kb on + strand, within Psyr_3599 at 4280.504 kb on - strand, within Psyr_3599 at 4280.648 kb on + strand, within Psyr_3599 at 4280.648 kb on + strand, within Psyr_3599 at 4280.648 kb on + strand, within Psyr_3599 at 4280.648 kb on + strand, within Psyr_3599 at 4280.648 kb on + strand, within Psyr_3599 at 4280.649 kb on - strand, within Psyr_3599 at 4280.649 kb on - strand, within Psyr_3599 at 4280.651 kb on + strand, within Psyr_3599 at 4280.651 kb on + strand, within Psyr_3599 at 4280.651 kb on + strand, within Psyr_3599 at 4280.651 kb on + strand, within Psyr_3599 at 4280.701 kb on + strand, within Psyr_3599 at 4280.701 kb on + strand, within Psyr_3599 at 4280.701 kb on + strand, within Psyr_3599 at 4280.711 kb on + strand, within Psyr_3599 at 4280.711 kb on + strand, within Psyr_3599 at 4280.712 kb on - strand, within Psyr_3599 at 4280.768 kb on + strand, within Psyr_3599 at 4280.768 kb on + strand, within Psyr_3599 at 4280.769 kb on - strand, within Psyr_3599 at 4280.769 kb on - strand, within Psyr_3599 at 4280.769 kb on - strand, within Psyr_3599 at 4280.789 kb on + strand, within Psyr_3599 at 4280.789 kb on + strand, within Psyr_3599 at 4280.789 kb on + strand, within Psyr_3599 at 4280.789 kb on + strand, within Psyr_3599 at 4280.789 kb on + strand, within Psyr_3599 at 4280.789 kb on + strand, within Psyr_3599 at 4280.790 kb on - strand, within Psyr_3599 at 4280.790 kb on - strand, within Psyr_3599 at 4280.790 kb on - strand, within Psyr_3599 at 4280.790 kb on - strand, within Psyr_3599 at 4280.923 kb on + strand, within Psyr_3599 at 4280.924 kb on - strand at 4280.924 kb on - strand, within Psyr_3599 at 4280.967 kb on + strand, within Psyr_3599 at 4280.967 kb on + strand, within Psyr_3599 at 4280.968 kb on - strand, within Psyr_3599 at 4281.140 kb on + strand, within Psyr_3599 at 4281.140 kb on + strand, within Psyr_3599 at 4281.140 kb on + strand, within Psyr_3599 at 4281.141 kb on - strand, within Psyr_3599 at 4281.155 kb on - strand, within Psyr_3599 at 4281.283 kb on - strand at 4281.796 kb on + strand, within Psyr_3600 at 4281.796 kb on + strand, within Psyr_3600 at 4281.797 kb on - strand, within Psyr_3600 at 4281.797 kb on - strand, within Psyr_3600 at 4282.098 kb on + strand, within Psyr_3600 at 4282.236 kb on + strand at 4282.237 kb on - strand at 4282.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 4,279,287 - Psyr_3598 0.24 -0.3 4,279,298 - Psyr_3598 0.26 +0.4 4,279,938 + -2.0 4,279,938 + -1.3 4,279,938 + -1.2 4,279,939 - -1.8 4,279,939 - +0.4 4,279,939 - -1.0 4,279,939 - -0.7 4,279,939 - +0.5 4,279,939 - -0.8 4,279,982 - +1.7 4,280,100 - -1.7 4,280,213 + +1.8 4,280,213 + +2.1 4,280,213 + +0.0 4,280,213 + -1.4 4,280,214 - +0.3 4,280,440 + Psyr_3599 0.23 -1.7 4,280,446 - Psyr_3599 0.23 +0.9 4,280,503 + Psyr_3599 0.29 -0.1 4,280,504 - Psyr_3599 0.29 +0.3 4,280,648 + Psyr_3599 0.42 +0.8 4,280,648 + Psyr_3599 0.42 +1.0 4,280,648 + Psyr_3599 0.42 -1.9 4,280,648 + Psyr_3599 0.42 +2.8 4,280,648 + Psyr_3599 0.42 -1.0 4,280,649 - Psyr_3599 0.42 +1.0 4,280,649 - Psyr_3599 0.42 +0.1 4,280,651 + Psyr_3599 0.42 -0.2 4,280,651 + Psyr_3599 0.42 -1.4 4,280,651 + Psyr_3599 0.42 +0.6 4,280,651 + Psyr_3599 0.42 +1.3 4,280,701 + Psyr_3599 0.47 +0.1 4,280,701 + Psyr_3599 0.47 -0.9 4,280,701 + Psyr_3599 0.47 -0.2 4,280,711 + Psyr_3599 0.48 -1.6 4,280,711 + Psyr_3599 0.48 +1.4 4,280,712 - Psyr_3599 0.48 +2.2 4,280,768 + Psyr_3599 0.53 -1.7 4,280,768 + Psyr_3599 0.53 -0.3 4,280,769 - Psyr_3599 0.53 +1.5 4,280,769 - Psyr_3599 0.53 -0.5 4,280,769 - Psyr_3599 0.53 +0.9 4,280,789 + Psyr_3599 0.55 +0.2 4,280,789 + Psyr_3599 0.55 -0.2 4,280,789 + Psyr_3599 0.55 +1.4 4,280,789 + Psyr_3599 0.55 -0.3 4,280,789 + Psyr_3599 0.55 +0.1 4,280,789 + Psyr_3599 0.55 +1.9 4,280,790 - Psyr_3599 0.55 +0.8 4,280,790 - Psyr_3599 0.55 +1.1 4,280,790 - Psyr_3599 0.55 -0.5 4,280,790 - Psyr_3599 0.55 -0.4 4,280,923 + Psyr_3599 0.67 +1.4 4,280,924 - +3.1 4,280,924 - Psyr_3599 0.67 +0.5 4,280,967 + Psyr_3599 0.71 +1.2 4,280,967 + Psyr_3599 0.71 -0.6 4,280,968 - Psyr_3599 0.71 +1.9 4,281,140 + Psyr_3599 0.87 -0.8 4,281,140 + Psyr_3599 0.87 -0.1 4,281,140 + Psyr_3599 0.87 -0.4 4,281,141 - Psyr_3599 0.87 +0.7 4,281,155 - Psyr_3599 0.88 -0.6 4,281,283 - +0.8 4,281,796 + Psyr_3600 0.46 +0.1 4,281,796 + Psyr_3600 0.46 -0.5 4,281,797 - Psyr_3600 0.47 -1.0 4,281,797 - Psyr_3600 0.47 +0.9 4,282,098 + Psyr_3600 0.78 +4.9 4,282,236 + +0.7 4,282,237 - -0.6 4,282,277 - +2.0
Or see this region's nucleotide sequence