Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3587 and Psyr_3588 are separated by 1 nucleotides Psyr_3588 and Psyr_3589 are separated by 86 nucleotides Psyr_3589 and Psyr_3590 are separated by 171 nucleotides Psyr_3590 and Psyr_3591 are separated by 86 nucleotides
Psyr_3587: Psyr_3587 - Intracellular septation protein A, at 4,269,669 to 4,270,304
_3587
Psyr_3588: Psyr_3588 - YCII-related protein, at 4,270,306 to 4,270,605
_3588
Psyr_3589: Psyr_3589 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,270,692 to 4,271,369
_3589
Psyr_3590: Psyr_3590 - conserved hypothetical protein, at 4,271,541 to 4,272,026
_3590
Psyr_3591: Psyr_3591 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,272,113 to 4,273,462
_3591
Position (kb) 4270
4271
4272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4269.795 kb on - strand, within Psyr_3587 at 4269.795 kb on - strand, within Psyr_3587 at 4269.798 kb on + strand, within Psyr_3587 at 4269.798 kb on + strand, within Psyr_3587 at 4269.799 kb on - strand, within Psyr_3587 at 4270.248 kb on + strand at 4270.284 kb on - strand at 4270.312 kb on + strand at 4270.313 kb on - strand at 4270.597 kb on - strand at 4270.708 kb on + strand at 4270.708 kb on + strand at 4270.708 kb on + strand at 4270.708 kb on + strand at 4270.709 kb on - strand at 4270.709 kb on - strand at 4270.709 kb on - strand at 4270.709 kb on - strand at 4270.775 kb on - strand, within Psyr_3589 at 4270.986 kb on + strand, within Psyr_3589 at 4271.253 kb on + strand, within Psyr_3589 at 4271.254 kb on - strand, within Psyr_3589 at 4271.355 kb on + strand at 4271.355 kb on + strand at 4271.355 kb on + strand at 4271.355 kb on + strand at 4271.355 kb on + strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.356 kb on - strand at 4271.358 kb on + strand at 4271.358 kb on + strand at 4271.359 kb on - strand at 4271.376 kb on - strand at 4271.389 kb on + strand at 4271.389 kb on + strand at 4271.389 kb on + strand at 4271.389 kb on + strand at 4271.389 kb on + strand at 4271.389 kb on + strand at 4271.445 kb on + strand at 4271.445 kb on + strand at 4271.446 kb on - strand at 4271.446 kb on - strand at 4271.446 kb on - strand at 4271.536 kb on - strand at 4271.536 kb on - strand at 4271.693 kb on + strand, within Psyr_3590 at 4271.693 kb on + strand, within Psyr_3590 at 4271.694 kb on - strand, within Psyr_3590 at 4271.694 kb on - strand, within Psyr_3590 at 4271.818 kb on - strand, within Psyr_3590 at 4272.168 kb on + strand at 4272.169 kb on - strand at 4272.196 kb on + strand at 4272.196 kb on + strand at 4272.196 kb on + strand at 4272.196 kb on + strand at 4272.196 kb on + strand at 4272.197 kb on - strand at 4272.197 kb on - strand at 4272.197 kb on - strand at 4272.197 kb on - strand at 4272.197 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 4,269,795 - Psyr_3587 0.20 -3.2 4,269,795 - Psyr_3587 0.20 -3.1 4,269,798 + Psyr_3587 0.20 -3.3 4,269,798 + Psyr_3587 0.20 -1.9 4,269,799 - Psyr_3587 0.20 -3.6 4,270,248 + -2.6 4,270,284 - -1.5 4,270,312 + -0.0 4,270,313 - -1.6 4,270,597 - -0.3 4,270,708 + +3.7 4,270,708 + -0.0 4,270,708 + -0.7 4,270,708 + -1.9 4,270,709 - +0.8 4,270,709 - -1.1 4,270,709 - +0.5 4,270,709 - +0.5 4,270,775 - Psyr_3589 0.12 +1.6 4,270,986 + Psyr_3589 0.43 +0.8 4,271,253 + Psyr_3589 0.83 +0.5 4,271,254 - Psyr_3589 0.83 +0.3 4,271,355 + -0.7 4,271,355 + +0.7 4,271,355 + -0.1 4,271,355 + -0.5 4,271,355 + -1.2 4,271,356 - -0.1 4,271,356 - +0.9 4,271,356 - -0.1 4,271,356 - -2.3 4,271,356 - +0.7 4,271,356 - -0.2 4,271,356 - +1.2 4,271,356 - +1.4 4,271,356 - +0.4 4,271,358 + -1.0 4,271,358 + +0.3 4,271,359 - +1.1 4,271,376 - -0.7 4,271,389 + +1.1 4,271,389 + -0.8 4,271,389 + +3.4 4,271,389 + -0.6 4,271,389 + +2.1 4,271,389 + -0.4 4,271,445 + -0.3 4,271,445 + +0.8 4,271,446 - +1.2 4,271,446 - -0.0 4,271,446 - +0.8 4,271,536 - -0.6 4,271,536 - +0.3 4,271,693 + Psyr_3590 0.31 -1.7 4,271,693 + Psyr_3590 0.31 -0.2 4,271,694 - Psyr_3590 0.31 +0.4 4,271,694 - Psyr_3590 0.31 +3.7 4,271,818 - Psyr_3590 0.57 +0.3 4,272,168 + -0.9 4,272,169 - -0.3 4,272,196 + -3.3 4,272,196 + +0.4 4,272,196 + +0.2 4,272,196 + -0.3 4,272,196 + -2.4 4,272,197 - +1.1 4,272,197 - -0.2 4,272,197 - +0.3 4,272,197 - +0.0 4,272,197 - +1.7
Or see this region's nucleotide sequence