Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3532 and Psyr_3533 are separated by 1 nucleotides Psyr_3533 and Psyr_3534 are separated by 162 nucleotides Psyr_3534 and Psyr_3535 are separated by 117 nucleotides Psyr_3535 and Psyr_3536 overlap by 31 nucleotides
Psyr_3532: Psyr_3532 - PAS, at 4,209,228 to 4,211,303
_3532
Psyr_3533: Psyr_3533 - conserved hypothetical protein, at 4,211,305 to 4,211,628
_3533
Psyr_3534: Psyr_3534 - Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer, at 4,211,791 to 4,213,680
_3534
Psyr_3535: Psyr_3535 - conserved hypothetical protein, at 4,213,798 to 4,214,592
_3535
Psyr_3536: Psyr_3536 - hypothetical protein, at 4,214,562 to 4,214,981
_3536
Position (kb) 4211
4212
4213
4214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4210.829 kb on - strand, within Psyr_3532 at 4210.829 kb on - strand, within Psyr_3532 at 4210.829 kb on - strand, within Psyr_3532 at 4210.934 kb on - strand, within Psyr_3532 at 4210.989 kb on + strand, within Psyr_3532 at 4211.074 kb on + strand, within Psyr_3532 at 4211.074 kb on + strand, within Psyr_3532 at 4211.074 kb on + strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.332 kb on + strand at 4211.332 kb on + strand at 4211.333 kb on - strand at 4211.599 kb on + strand at 4211.600 kb on - strand at 4211.600 kb on - strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.684 kb on - strand at 4211.684 kb on - strand at 4211.684 kb on - strand at 4211.684 kb on - strand at 4211.684 kb on - strand at 4211.686 kb on - strand at 4211.704 kb on - strand at 4211.704 kb on - strand at 4211.746 kb on - strand at 4211.749 kb on + strand at 4211.749 kb on + strand at 4211.749 kb on + strand at 4211.749 kb on + strand at 4211.749 kb on + strand at 4211.749 kb on + strand at 4211.750 kb on - strand at 4211.750 kb on - strand at 4211.750 kb on - strand at 4211.750 kb on - strand at 4211.750 kb on - strand at 4211.775 kb on - strand at 4211.817 kb on + strand at 4211.865 kb on - strand at 4211.875 kb on + strand at 4211.875 kb on + strand at 4211.876 kb on - strand at 4211.876 kb on - strand at 4211.876 kb on - strand at 4211.876 kb on - strand at 4211.876 kb on - strand at 4211.876 kb on - strand at 4211.876 kb on - strand at 4211.876 kb on - strand at 4211.885 kb on - strand at 4211.885 kb on - strand at 4211.964 kb on + strand at 4212.091 kb on + strand, within Psyr_3534 at 4212.091 kb on + strand, within Psyr_3534 at 4212.091 kb on + strand, within Psyr_3534 at 4212.092 kb on - strand, within Psyr_3534 at 4212.175 kb on + strand, within Psyr_3534 at 4212.175 kb on + strand, within Psyr_3534 at 4212.175 kb on + strand, within Psyr_3534 at 4212.296 kb on + strand, within Psyr_3534 at 4212.297 kb on - strand, within Psyr_3534 at 4212.297 kb on - strand, within Psyr_3534 at 4212.297 kb on - strand, within Psyr_3534 at 4212.297 kb on - strand, within Psyr_3534 at 4212.297 kb on - strand, within Psyr_3534 at 4212.297 kb on - strand, within Psyr_3534 at 4212.569 kb on + strand, within Psyr_3534 at 4212.570 kb on - strand, within Psyr_3534 at 4212.821 kb on + strand, within Psyr_3534 at 4212.921 kb on + strand, within Psyr_3534 at 4212.921 kb on + strand, within Psyr_3534 at 4212.921 kb on + strand, within Psyr_3534 at 4212.922 kb on - strand, within Psyr_3534 at 4213.214 kb on + strand, within Psyr_3534 at 4213.214 kb on + strand, within Psyr_3534 at 4213.214 kb on + strand, within Psyr_3534 at 4213.215 kb on - strand, within Psyr_3534 at 4213.215 kb on - strand, within Psyr_3534 at 4213.215 kb on - strand, within Psyr_3534 at 4213.215 kb on - strand, within Psyr_3534 at 4213.570 kb on - strand at 4213.570 kb on - strand at 4213.589 kb on + strand at 4213.590 kb on - strand at 4213.729 kb on + strand at 4213.729 kb on + strand at 4213.730 kb on - strand at 4213.730 kb on - strand at 4213.730 kb on - strand at 4213.730 kb on - strand at 4213.730 kb on - strand at 4213.730 kb on - strand at 4213.730 kb on - strand at 4213.730 kb on - strand at 4213.733 kb on + strand at 4213.768 kb on + strand at 4213.774 kb on + strand at 4213.872 kb on + strand at 4213.872 kb on + strand at 4213.873 kb on - strand at 4213.877 kb on + strand at 4213.877 kb on + strand at 4213.878 kb on - strand, within Psyr_3535 at 4213.878 kb on - strand, within Psyr_3535 at 4213.878 kb on - strand, within Psyr_3535 at 4213.878 kb on - strand, within Psyr_3535 at 4213.878 kb on - strand, within Psyr_3535 at 4213.878 kb on - strand, within Psyr_3535 at 4213.878 kb on - strand, within Psyr_3535 at 4213.878 kb on - strand, within Psyr_3535 at 4213.906 kb on + strand, within Psyr_3535 at 4213.906 kb on + strand, within Psyr_3535 at 4213.907 kb on - strand, within Psyr_3535 at 4213.907 kb on - strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.987 kb on + strand, within Psyr_3535 at 4213.987 kb on + strand, within Psyr_3535 at 4213.987 kb on + strand, within Psyr_3535 at 4214.077 kb on + strand, within Psyr_3535 at 4214.077 kb on + strand, within Psyr_3535 at 4214.230 kb on + strand, within Psyr_3535 at 4214.230 kb on + strand, within Psyr_3535 at 4214.230 kb on + strand, within Psyr_3535 at 4214.231 kb on - strand, within Psyr_3535 at 4214.231 kb on - strand, within Psyr_3535 at 4214.231 kb on - strand, within Psyr_3535 at 4214.476 kb on + strand, within Psyr_3535 at 4214.477 kb on - strand, within Psyr_3535 at 4214.477 kb on - strand, within Psyr_3535 at 4214.525 kb on + strand at 4214.525 kb on + strand at 4214.525 kb on + strand at 4214.525 kb on + strand at 4214.563 kb on + strand at 4214.564 kb on - strand at 4214.574 kb on + strand at 4214.575 kb on - strand at 4214.575 kb on - strand at 4214.575 kb on - strand at 4214.575 kb on - strand at 4214.575 kb on - strand at 4214.646 kb on + strand, within Psyr_3536 at 4214.674 kb on + strand, within Psyr_3536 at 4214.674 kb on + strand, within Psyr_3536 at 4214.674 kb on + strand, within Psyr_3536 at 4214.674 kb on + strand, within Psyr_3536 at 4214.675 kb on - strand, within Psyr_3536
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 4,210,829 - Psyr_3532 0.77 -1.5 4,210,829 - Psyr_3532 0.77 -0.6 4,210,829 - Psyr_3532 0.77 -2.5 4,210,934 - Psyr_3532 0.82 +0.1 4,210,989 + Psyr_3532 0.85 -1.1 4,211,074 + Psyr_3532 0.89 +0.6 4,211,074 + Psyr_3532 0.89 -0.0 4,211,074 + Psyr_3532 0.89 +0.8 4,211,075 - Psyr_3532 0.89 -0.2 4,211,075 - Psyr_3532 0.89 -1.5 4,211,075 - Psyr_3532 0.89 +0.1 4,211,075 - Psyr_3532 0.89 +0.5 4,211,075 - Psyr_3532 0.89 +0.2 4,211,075 - Psyr_3532 0.89 +0.0 4,211,075 - Psyr_3532 0.89 +0.8 4,211,075 - Psyr_3532 0.89 -0.5 4,211,075 - Psyr_3532 0.89 -0.6 4,211,075 - +0.5 4,211,075 - Psyr_3532 0.89 -0.6 4,211,075 - Psyr_3532 0.89 +0.9 4,211,075 - Psyr_3532 0.89 +0.4 4,211,332 + +0.9 4,211,332 + -0.6 4,211,333 - -0.3 4,211,599 + -0.9 4,211,600 - -0.3 4,211,600 - +1.1 4,211,683 + -0.7 4,211,683 + +1.2 4,211,683 + +1.4 4,211,683 + -0.5 4,211,683 + +1.2 4,211,683 + +0.4 4,211,683 + -0.5 4,211,683 + +3.1 4,211,683 + -0.7 4,211,684 - +0.3 4,211,684 - +2.1 4,211,684 - +1.2 4,211,684 - +0.3 4,211,684 - -0.6 4,211,686 - -0.2 4,211,704 - +1.4 4,211,704 - -0.1 4,211,746 - -0.3 4,211,749 + -1.5 4,211,749 + +1.6 4,211,749 + +0.6 4,211,749 + -0.7 4,211,749 + +1.1 4,211,749 + +1.6 4,211,750 - +1.6 4,211,750 - +0.1 4,211,750 - +0.1 4,211,750 - +2.4 4,211,750 - +1.2 4,211,775 - +0.3 4,211,817 + +0.9 4,211,865 - -0.9 4,211,875 + -1.6 4,211,875 + -0.6 4,211,876 - +0.3 4,211,876 - +0.3 4,211,876 - +1.4 4,211,876 - +0.4 4,211,876 - +0.1 4,211,876 - +0.8 4,211,876 - +1.3 4,211,876 - -0.2 4,211,885 - -0.4 4,211,885 - +1.1 4,211,964 + -1.4 4,212,091 + Psyr_3534 0.16 +0.1 4,212,091 + Psyr_3534 0.16 -1.3 4,212,091 + Psyr_3534 0.16 +1.1 4,212,092 - Psyr_3534 0.16 +0.1 4,212,175 + Psyr_3534 0.20 +0.2 4,212,175 + Psyr_3534 0.20 +1.5 4,212,175 + Psyr_3534 0.20 +0.1 4,212,296 + Psyr_3534 0.27 +0.1 4,212,297 - Psyr_3534 0.27 -1.4 4,212,297 - Psyr_3534 0.27 +0.7 4,212,297 - Psyr_3534 0.27 +0.2 4,212,297 - Psyr_3534 0.27 +0.3 4,212,297 - Psyr_3534 0.27 -0.2 4,212,297 - Psyr_3534 0.27 +0.9 4,212,569 + Psyr_3534 0.41 +0.2 4,212,570 - Psyr_3534 0.41 +0.1 4,212,821 + Psyr_3534 0.54 -0.7 4,212,921 + Psyr_3534 0.60 +0.5 4,212,921 + Psyr_3534 0.60 -0.9 4,212,921 + Psyr_3534 0.60 -2.0 4,212,922 - Psyr_3534 0.60 +2.5 4,213,214 + Psyr_3534 0.75 -0.7 4,213,214 + Psyr_3534 0.75 -0.8 4,213,214 + Psyr_3534 0.75 +1.1 4,213,215 - Psyr_3534 0.75 +0.2 4,213,215 - Psyr_3534 0.75 -2.4 4,213,215 - Psyr_3534 0.75 +0.4 4,213,215 - Psyr_3534 0.75 -1.1 4,213,570 - -3.3 4,213,570 - +0.4 4,213,589 + +0.6 4,213,590 - +3.2 4,213,729 + +1.1 4,213,729 + +0.1 4,213,730 - -0.3 4,213,730 - +0.7 4,213,730 - +0.9 4,213,730 - +0.2 4,213,730 - -1.5 4,213,730 - -1.4 4,213,730 - +1.3 4,213,730 - +0.8 4,213,733 + +0.0 4,213,768 + -0.1 4,213,774 + +1.1 4,213,872 + -0.2 4,213,872 + +1.1 4,213,873 - -0.7 4,213,877 + +0.3 4,213,877 + +1.8 4,213,878 - Psyr_3535 0.10 -0.8 4,213,878 - Psyr_3535 0.10 -0.7 4,213,878 - Psyr_3535 0.10 +0.5 4,213,878 - Psyr_3535 0.10 +0.2 4,213,878 - Psyr_3535 0.10 +0.7 4,213,878 - Psyr_3535 0.10 +2.1 4,213,878 - Psyr_3535 0.10 -1.3 4,213,878 - Psyr_3535 0.10 +1.3 4,213,906 + Psyr_3535 0.14 -1.1 4,213,906 + Psyr_3535 0.14 -0.0 4,213,907 - Psyr_3535 0.14 +1.6 4,213,907 - Psyr_3535 0.14 +0.6 4,213,933 + Psyr_3535 0.17 +1.5 4,213,933 + Psyr_3535 0.17 +1.6 4,213,933 + Psyr_3535 0.17 -0.2 4,213,933 + Psyr_3535 0.17 +0.5 4,213,933 + Psyr_3535 0.17 -0.1 4,213,933 + Psyr_3535 0.17 -0.3 4,213,933 + Psyr_3535 0.17 -1.9 4,213,933 + Psyr_3535 0.17 +0.7 4,213,934 - Psyr_3535 0.17 -1.9 4,213,934 - Psyr_3535 0.17 +0.5 4,213,934 - Psyr_3535 0.17 -0.5 4,213,934 - Psyr_3535 0.17 +0.4 4,213,934 - Psyr_3535 0.17 -0.8 4,213,934 - Psyr_3535 0.17 +0.2 4,213,934 - Psyr_3535 0.17 +0.6 4,213,934 - Psyr_3535 0.17 +0.7 4,213,934 - Psyr_3535 0.17 +0.1 4,213,987 + Psyr_3535 0.24 +0.1 4,213,987 + Psyr_3535 0.24 +0.9 4,213,987 + Psyr_3535 0.24 +0.3 4,214,077 + Psyr_3535 0.35 -1.3 4,214,077 + Psyr_3535 0.35 +2.2 4,214,230 + Psyr_3535 0.54 -0.9 4,214,230 + Psyr_3535 0.54 +0.9 4,214,230 + Psyr_3535 0.54 +0.1 4,214,231 - Psyr_3535 0.54 +1.9 4,214,231 - Psyr_3535 0.54 +0.2 4,214,231 - Psyr_3535 0.54 +1.1 4,214,476 + Psyr_3535 0.85 -0.5 4,214,477 - Psyr_3535 0.85 +0.4 4,214,477 - Psyr_3535 0.85 -1.1 4,214,525 + -2.1 4,214,525 + +0.8 4,214,525 + +0.7 4,214,525 + +1.3 4,214,563 + -2.6 4,214,564 - -0.4 4,214,574 + -0.4 4,214,575 - -1.0 4,214,575 - +0.5 4,214,575 - -0.4 4,214,575 - +0.1 4,214,575 - +0.6 4,214,646 + Psyr_3536 0.20 -2.0 4,214,674 + Psyr_3536 0.27 -1.1 4,214,674 + Psyr_3536 0.27 -0.0 4,214,674 + Psyr_3536 0.27 +0.4 4,214,674 + Psyr_3536 0.27 -0.8 4,214,675 - Psyr_3536 0.27 +2.1
Or see this region's nucleotide sequence