Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3468

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3467 and Psyr_3468 are separated by 305 nucleotidesPsyr_3468 and Psyr_3469 are separated by 114 nucleotides Psyr_3467: Psyr_3467 - 3-oxoacyl-[acyl-carrier protein] synthase, at 4,130,866 to 4,131,795 _3467 Psyr_3468: Psyr_3468 - Glycosyl transferase, family 2, at 4,132,101 to 4,135,007 _3468 Psyr_3469: Psyr_3469 - Glycosyl transferase, family 2, at 4,135,122 to 4,138,694 _3469 Position (kb) 4132 4133 4134 4135 4136Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4131.925 kb on + strandat 4132.150 kb on + strandat 4132.150 kb on + strandat 4132.150 kb on + strandat 4132.150 kb on + strandat 4132.150 kb on + strandat 4132.151 kb on - strandat 4132.151 kb on - strandat 4132.260 kb on + strandat 4132.357 kb on + strandat 4132.357 kb on + strandat 4132.357 kb on + strandat 4132.358 kb on - strandat 4132.402 kb on + strand, within Psyr_3468at 4132.402 kb on + strand, within Psyr_3468at 4132.402 kb on + strand, within Psyr_3468at 4132.402 kb on + strand, within Psyr_3468at 4132.402 kb on + strand, within Psyr_3468at 4132.402 kb on + strand, within Psyr_3468at 4132.402 kb on + strand, within Psyr_3468at 4132.402 kb on + strandat 4132.403 kb on - strand, within Psyr_3468at 4132.403 kb on - strand, within Psyr_3468at 4132.430 kb on + strand, within Psyr_3468at 4132.430 kb on + strand, within Psyr_3468at 4132.430 kb on + strand, within Psyr_3468at 4132.431 kb on - strand, within Psyr_3468at 4132.431 kb on - strand, within Psyr_3468at 4132.431 kb on - strand, within Psyr_3468at 4132.431 kb on - strand, within Psyr_3468at 4132.432 kb on + strand, within Psyr_3468at 4132.432 kb on + strand, within Psyr_3468at 4132.433 kb on - strand, within Psyr_3468at 4132.433 kb on - strand, within Psyr_3468at 4132.433 kb on - strand, within Psyr_3468at 4132.545 kb on + strand, within Psyr_3468at 4132.639 kb on + strand, within Psyr_3468at 4132.924 kb on + strand, within Psyr_3468at 4132.924 kb on + strand, within Psyr_3468at 4132.924 kb on + strand, within Psyr_3468at 4132.924 kb on + strand, within Psyr_3468at 4132.925 kb on - strand, within Psyr_3468at 4132.925 kb on - strand, within Psyr_3468at 4132.925 kb on - strand, within Psyr_3468at 4132.925 kb on - strand, within Psyr_3468at 4132.925 kb on - strand, within Psyr_3468at 4132.925 kb on - strand, within Psyr_3468at 4133.137 kb on + strand, within Psyr_3468at 4133.425 kb on + strand, within Psyr_3468at 4133.425 kb on + strand, within Psyr_3468at 4133.425 kb on + strand, within Psyr_3468at 4133.425 kb on + strand, within Psyr_3468at 4133.426 kb on - strand, within Psyr_3468at 4133.426 kb on - strand, within Psyr_3468at 4133.426 kb on - strand, within Psyr_3468at 4133.426 kb on - strand, within Psyr_3468at 4133.426 kb on - strand, within Psyr_3468at 4133.524 kb on + strand, within Psyr_3468at 4133.524 kb on + strand, within Psyr_3468at 4133.524 kb on + strand, within Psyr_3468at 4133.525 kb on - strand, within Psyr_3468at 4133.525 kb on - strand, within Psyr_3468at 4133.568 kb on + strand, within Psyr_3468at 4133.568 kb on + strand, within Psyr_3468at 4133.568 kb on + strand, within Psyr_3468at 4133.568 kb on + strand, within Psyr_3468at 4133.568 kb on + strand, within Psyr_3468at 4133.568 kb on + strand, within Psyr_3468at 4133.568 kb on + strand, within Psyr_3468at 4133.569 kb on - strand, within Psyr_3468at 4133.569 kb on - strand, within Psyr_3468at 4133.569 kb on - strand, within Psyr_3468at 4133.569 kb on - strand, within Psyr_3468at 4133.569 kb on - strand, within Psyr_3468at 4133.569 kb on - strand, within Psyr_3468at 4133.569 kb on - strand, within Psyr_3468at 4133.569 kb on - strand, within Psyr_3468at 4133.569 kb on - strand, within Psyr_3468at 4133.569 kb on - strand, within Psyr_3468at 4133.860 kb on + strand, within Psyr_3468at 4133.861 kb on - strand, within Psyr_3468at 4133.861 kb on - strand, within Psyr_3468at 4133.861 kb on - strand, within Psyr_3468at 4133.861 kb on - strand, within Psyr_3468at 4134.043 kb on + strand, within Psyr_3468at 4134.043 kb on + strand, within Psyr_3468at 4134.044 kb on - strand, within Psyr_3468at 4134.044 kb on - strand, within Psyr_3468at 4134.367 kb on + strand, within Psyr_3468at 4134.368 kb on - strand, within Psyr_3468at 4134.368 kb on - strand, within Psyr_3468at 4134.409 kb on + strand, within Psyr_3468at 4134.409 kb on + strand, within Psyr_3468at 4134.410 kb on - strand, within Psyr_3468at 4134.410 kb on - strand, within Psyr_3468at 4134.416 kb on + strand, within Psyr_3468at 4134.416 kb on + strand, within Psyr_3468at 4134.417 kb on - strand, within Psyr_3468at 4134.566 kb on - strand, within Psyr_3468at 4134.566 kb on - strand, within Psyr_3468at 4134.566 kb on - strand, within Psyr_3468at 4134.566 kb on - strand, within Psyr_3468at 4134.599 kb on - strand, within Psyr_3468at 4134.599 kb on - strand, within Psyr_3468at 4134.599 kb on - strand, within Psyr_3468at 4134.599 kb on - strand, within Psyr_3468at 4134.599 kb on - strand, within Psyr_3468at 4134.599 kb on - strand, within Psyr_3468at 4134.599 kb on - strand, within Psyr_3468at 4134.599 kb on - strand, within Psyr_3468at 4134.625 kb on + strand, within Psyr_3468at 4134.625 kb on + strand, within Psyr_3468at 4134.626 kb on - strand, within Psyr_3468at 4134.655 kb on + strand, within Psyr_3468at 4134.656 kb on - strand, within Psyr_3468at 4134.817 kb on + strandat 4134.817 kb on + strandat 4134.817 kb on + strandat 4134.818 kb on - strandat 4134.876 kb on + strandat 4134.876 kb on + strandat 4134.877 kb on - strandat 4134.877 kb on - strandat 4134.901 kb on + strandat 4134.902 kb on - strandat 4134.902 kb on - strandat 4134.904 kb on + strandat 4134.904 kb on + strandat 4134.904 kb on + strandat 4135.019 kb on - strandat 4135.151 kb on - strandat 4135.285 kb on + strandat 4135.286 kb on - strandat 4135.286 kb on - strandat 4135.498 kb on + strand, within Psyr_3469at 4135.499 kb on - strand, within Psyr_3469at 4135.499 kb on - strand, within Psyr_3469at 4135.774 kb on - strand, within Psyr_3469at 4135.852 kb on + strand, within Psyr_3469at 4135.852 kb on + strand, within Psyr_3469at 4135.852 kb on + strand, within Psyr_3469at 4135.852 kb on + strand, within Psyr_3469at 4135.852 kb on + strand, within Psyr_3469at 4135.852 kb on + strand, within Psyr_3469at 4135.852 kb on + strand, within Psyr_3469at 4135.853 kb on - strand, within Psyr_3469at 4135.853 kb on - strand, within Psyr_3469at 4135.853 kb on - strand, within Psyr_3469at 4135.871 kb on + strand, within Psyr_3469at 4135.871 kb on + strand, within Psyr_3469at 4135.872 kb on - strand, within Psyr_3469at 4135.888 kb on + strand, within Psyr_3469at 4135.888 kb on + strand, within Psyr_3469at 4135.996 kb on + strand, within Psyr_3469at 4135.996 kb on + strand, within Psyr_3469at 4135.996 kb on + strand, within Psyr_3469at 4135.997 kb on - strand, within Psyr_3469

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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4,131,925 + +0.8
4,132,150 + -0.6
4,132,150 + +0.7
4,132,150 + +1.3
4,132,150 + +1.1
4,132,150 + -0.3
4,132,151 - +0.5
4,132,151 - -1.7
4,132,260 + -0.2
4,132,357 + +0.7
4,132,357 + +2.7
4,132,357 + +1.2
4,132,358 - +0.2
4,132,402 + Psyr_3468 0.10 +1.1
4,132,402 + Psyr_3468 0.10 +0.3
4,132,402 + Psyr_3468 0.10 -0.7
4,132,402 + Psyr_3468 0.10 +0.3
4,132,402 + Psyr_3468 0.10 +1.7
4,132,402 + Psyr_3468 0.10 +1.2
4,132,402 + Psyr_3468 0.10 +0.6
4,132,402 + +1.1
4,132,403 - Psyr_3468 0.10 -0.5
4,132,403 - Psyr_3468 0.10 -0.9
4,132,430 + Psyr_3468 0.11 -0.1
4,132,430 + Psyr_3468 0.11 +0.2
4,132,430 + Psyr_3468 0.11 +0.3
4,132,431 - Psyr_3468 0.11 -1.5
4,132,431 - Psyr_3468 0.11 -1.2
4,132,431 - Psyr_3468 0.11 +0.6
4,132,431 - Psyr_3468 0.11 -2.4
4,132,432 + Psyr_3468 0.11 +1.4
4,132,432 + Psyr_3468 0.11 +0.3
4,132,433 - Psyr_3468 0.11 +0.3
4,132,433 - Psyr_3468 0.11 +1.1
4,132,433 - Psyr_3468 0.11 -1.2
4,132,545 + Psyr_3468 0.15 +0.2
4,132,639 + Psyr_3468 0.19 -0.1
4,132,924 + Psyr_3468 0.28 +0.4
4,132,924 + Psyr_3468 0.28 -0.4
4,132,924 + Psyr_3468 0.28 +0.3
4,132,924 + Psyr_3468 0.28 +1.1
4,132,925 - Psyr_3468 0.28 +0.0
4,132,925 - Psyr_3468 0.28 +0.4
4,132,925 - Psyr_3468 0.28 +1.3
4,132,925 - Psyr_3468 0.28 +0.2
4,132,925 - Psyr_3468 0.28 +0.9
4,132,925 - Psyr_3468 0.28 +0.3
4,133,137 + Psyr_3468 0.36 -1.5
4,133,425 + Psyr_3468 0.46 +1.7
4,133,425 + Psyr_3468 0.46 +0.5
4,133,425 + Psyr_3468 0.46 -2.5
4,133,425 + Psyr_3468 0.46 +0.4
4,133,426 - Psyr_3468 0.46 +1.0
4,133,426 - Psyr_3468 0.46 +1.1
4,133,426 - Psyr_3468 0.46 +0.6
4,133,426 - Psyr_3468 0.46 +0.9
4,133,426 - Psyr_3468 0.46 +0.6
4,133,524 + Psyr_3468 0.49 +1.4
4,133,524 + Psyr_3468 0.49 +0.5
4,133,524 + Psyr_3468 0.49 -1.6
4,133,525 - Psyr_3468 0.49 -0.3
4,133,525 - Psyr_3468 0.49 -0.6
4,133,568 + Psyr_3468 0.50 +1.7
4,133,568 + Psyr_3468 0.50 +1.7
4,133,568 + Psyr_3468 0.50 +1.8
4,133,568 + Psyr_3468 0.50 -3.5
4,133,568 + Psyr_3468 0.50 +1.1
4,133,568 + Psyr_3468 0.50 -3.3
4,133,568 + Psyr_3468 0.50 -0.3
4,133,569 - Psyr_3468 0.50 +0.7
4,133,569 - Psyr_3468 0.50 +1.1
4,133,569 - Psyr_3468 0.50 +0.7
4,133,569 - Psyr_3468 0.50 +0.2
4,133,569 - Psyr_3468 0.50 +0.4
4,133,569 - Psyr_3468 0.50 +1.7
4,133,569 - Psyr_3468 0.50 +0.1
4,133,569 - Psyr_3468 0.50 -1.9
4,133,569 - Psyr_3468 0.50 +1.1
4,133,569 - Psyr_3468 0.50 -1.8
4,133,860 + Psyr_3468 0.61 +0.2
4,133,861 - Psyr_3468 0.61 -0.5
4,133,861 - Psyr_3468 0.61 +0.7
4,133,861 - Psyr_3468 0.61 +1.6
4,133,861 - Psyr_3468 0.61 +0.2
4,134,043 + Psyr_3468 0.67 +0.2
4,134,043 + Psyr_3468 0.67 +0.3
4,134,044 - Psyr_3468 0.67 -0.9
4,134,044 - Psyr_3468 0.67 -0.4
4,134,367 + Psyr_3468 0.78 +1.5
4,134,368 - Psyr_3468 0.78 -3.3
4,134,368 - Psyr_3468 0.78 +0.5
4,134,409 + Psyr_3468 0.79 +0.4
4,134,409 + Psyr_3468 0.79 +1.1
4,134,410 - Psyr_3468 0.79 -1.0
4,134,410 - Psyr_3468 0.79 +0.2
4,134,416 + Psyr_3468 0.80 +0.6
4,134,416 + Psyr_3468 0.80 +0.9
4,134,417 - Psyr_3468 0.80 -1.1
4,134,566 - Psyr_3468 0.85 -0.1
4,134,566 - Psyr_3468 0.85 -2.1
4,134,566 - Psyr_3468 0.85 -0.3
4,134,566 - Psyr_3468 0.85 +0.5
4,134,599 - Psyr_3468 0.86 +0.9
4,134,599 - Psyr_3468 0.86 -0.5
4,134,599 - Psyr_3468 0.86 +1.8
4,134,599 - Psyr_3468 0.86 -1.5
4,134,599 - Psyr_3468 0.86 +0.7
4,134,599 - Psyr_3468 0.86 +0.5
4,134,599 - Psyr_3468 0.86 -1.0
4,134,599 - Psyr_3468 0.86 +0.4
4,134,625 + Psyr_3468 0.87 -0.1
4,134,625 + Psyr_3468 0.87 +1.5
4,134,626 - Psyr_3468 0.87 -0.6
4,134,655 + Psyr_3468 0.88 -0.3
4,134,656 - Psyr_3468 0.88 -0.7
4,134,817 + +0.1
4,134,817 + +1.3
4,134,817 + +1.5
4,134,818 - +4.1
4,134,876 + -2.4
4,134,876 + -0.7
4,134,877 - -0.8
4,134,877 - -0.7
4,134,901 + +0.2
4,134,902 - +0.0
4,134,902 - +1.7
4,134,904 + -0.4
4,134,904 + +0.7
4,134,904 + +0.1
4,135,019 - -2.3
4,135,151 - +0.1
4,135,285 + +2.1
4,135,286 - +0.3
4,135,286 - -1.4
4,135,498 + Psyr_3469 0.11 -0.9
4,135,499 - Psyr_3469 0.11 +0.1
4,135,499 - Psyr_3469 0.11 -0.7
4,135,774 - Psyr_3469 0.18 -1.5
4,135,852 + Psyr_3469 0.20 +0.2
4,135,852 + Psyr_3469 0.20 +0.5
4,135,852 + Psyr_3469 0.20 -1.1
4,135,852 + Psyr_3469 0.20 +1.9
4,135,852 + Psyr_3469 0.20 +1.0
4,135,852 + Psyr_3469 0.20 +0.1
4,135,852 + Psyr_3469 0.20 +1.1
4,135,853 - Psyr_3469 0.20 +0.2
4,135,853 - Psyr_3469 0.20 -0.9
4,135,853 - Psyr_3469 0.20 -0.1
4,135,871 + Psyr_3469 0.21 -0.2
4,135,871 + Psyr_3469 0.21 +1.1
4,135,872 - Psyr_3469 0.21 -0.9
4,135,888 + Psyr_3469 0.21 -2.0
4,135,888 + Psyr_3469 0.21 -0.7
4,135,996 + Psyr_3469 0.24 -2.7
4,135,996 + Psyr_3469 0.24 +0.6
4,135,996 + Psyr_3469 0.24 +1.2
4,135,997 - Psyr_3469 0.24 -0.5

Or see this region's nucleotide sequence