Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3435

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
4,098,670	-		Psyr_3434	0.81	-0.6
4,098,771	+		Psyr_3434	0.85	-2.6
4,098,789	+		Psyr_3434	0.86	+0.2
4,098,954	+				+0.6
4,098,954	+				-0.1
4,098,954	+				-1.7
4,098,955	-				+0.1
4,098,955	-				-0.9
4,098,955	-				-0.7
4,098,955	-				+0.3
4,098,955	-				-0.5
4,098,955	-				-0.2
4,098,955	-				-0.2
4,098,955	-				+0.2
4,098,955	-				+0.1
4,099,141	+				-1.2
4,099,141	+				+0.1
4,099,142	-				+0.0
4,099,142	-				-0.7
4,099,170	+				-1.5
4,099,170	+				-2.8
4,099,171	-				-0.2
4,099,171	-				-0.6
4,099,171	-				+0.1
4,099,206	-				-1.2
4,099,405	+		Psyr_3435	0.34	-2.5
4,099,598	+		Psyr_3435	0.58	-0.4
4,099,657	+		Psyr_3435	0.66	-0.9
4,099,657	+		Psyr_3435	0.66	+0.5
4,099,657	+		Psyr_3435	0.66	-0.5
4,099,657	+		Psyr_3435	0.66	-0.4
4,099,657	+		Psyr_3435	0.66	-1.3
4,099,658	-		Psyr_3435	0.66	-1.5
4,099,658	-		Psyr_3435	0.66	-0.1
4,099,734	+		Psyr_3435	0.76	-0.2
4,099,884	+				-0.6
4,099,950	+				-0.4
4,099,950	+				+1.7
4,099,950	+				+1.1
4,099,951	-				-0.6
4,099,951	-				-0.5
4,099,951	-				-1.1
4,100,014	+		Psyr_3436	0.18	+0.7
4,100,014	+		Psyr_3436	0.18	-0.5
4,100,014	+		Psyr_3436	0.18	-0.6
4,100,014	+		Psyr_3436	0.18	-1.5
4,100,014	+		Psyr_3436	0.18	-1.0
4,100,014	+		Psyr_3436	0.18	-1.6
4,100,014	+		Psyr_3436	0.18	+0.7
4,100,014	+		Psyr_3436	0.18	+0.1
4,100,014	+		Psyr_3436	0.18	+0.7
4,100,014	+		Psyr_3436	0.18	+0.7
4,100,015	-		Psyr_3436	0.18	-0.3
4,100,015	-		Psyr_3436	0.18	+1.5
4,100,015	-		Psyr_3436	0.18	-2.4
4,100,015	-		Psyr_3436	0.18	-2.8
4,100,018	+		Psyr_3436	0.19	+1.9
4,100,019	-		Psyr_3436	0.19	+2.5
4,100,019	-		Psyr_3436	0.19	+0.7
4,100,019	-		Psyr_3436	0.19	-0.0
4,100,244	+		Psyr_3436	0.77	+2.0
4,100,244	+		Psyr_3436	0.77	-1.0
4,100,245	-		Psyr_3436	0.78	-0.5
4,100,518	+				+0.0
4,100,559	-				+1.7
4,100,633	+				-1.7
4,100,633	+				+0.6
4,100,633	+				+0.2
4,100,634	-				-0.3
4,100,634	-				+0.0
4,100,634	-				+0.4
4,100,703	+		Psyr_3437	0.17	+0.3
4,100,704	-		Psyr_3437	0.17	-0.9
4,100,706	+		Psyr_3437	0.18	-1.9
4,100,706	+		Psyr_3437	0.18	-0.4
4,100,706	+		Psyr_3437	0.18	+0.6
4,100,707	-		Psyr_3437	0.18	+0.1
4,100,707	-		Psyr_3437	0.18	-0.5
4,100,893	+		Psyr_3437	0.43	+1.9
4,100,913	+		Psyr_3437	0.45	+0.9
4,100,913	+		Psyr_3437	0.45	-1.8
4,100,913	+		Psyr_3437	0.45	-2.5
4,100,913	+		Psyr_3437	0.45	+1.1
4,100,913	+		Psyr_3437	0.45	+0.5
4,100,914	-		Psyr_3437	0.46	+0.8
4,100,914	-		Psyr_3437	0.46	+0.3
4,100,914	-		Psyr_3437	0.46	-0.3
4,100,914	-		Psyr_3437	0.46	-1.5