Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3424

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3423 and Psyr_3424 are separated by 14 nucleotidesPsyr_3424 and Psyr_3425 are separated by 152 nucleotidesPsyr_3425 and Psyr_3426 are separated by 61 nucleotides Psyr_3423: Psyr_3423 - coproporphyrinogen III oxidase, anaerobic, at 4,087,450 to 4,088,835 _3423 Psyr_3424: Psyr_3424 - conserved hypothetical protein, at 4,088,850 to 4,089,317 _3424 Psyr_3425: Psyr_3425 - Cyclic nucleotide-binding:Bacterial regulatory protein, Crp, at 4,089,470 to 4,090,204 _3425 Psyr_3426: Psyr_3426 - adenine phosphoribosyltransferase, at 4,090,266 to 4,090,814 _3426 Position (kb) 4088 4089 4090Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4087.885 kb on + strand, within Psyr_3423at 4087.885 kb on + strand, within Psyr_3423at 4087.886 kb on - strand, within Psyr_3423at 4088.095 kb on + strand, within Psyr_3423at 4088.096 kb on - strand, within Psyr_3423at 4088.096 kb on - strand, within Psyr_3423at 4088.096 kb on - strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.186 kb on - strand, within Psyr_3423at 4088.186 kb on - strand, within Psyr_3423at 4088.186 kb on - strand, within Psyr_3423at 4088.186 kb on - strand, within Psyr_3423at 4088.186 kb on - strand, within Psyr_3423at 4088.186 kb on - strand, within Psyr_3423at 4088.311 kb on + strand, within Psyr_3423at 4088.312 kb on - strand, within Psyr_3423at 4088.312 kb on - strand, within Psyr_3423at 4088.312 kb on - strand, within Psyr_3423at 4088.398 kb on + strand, within Psyr_3423at 4088.398 kb on + strand, within Psyr_3423at 4088.398 kb on + strand, within Psyr_3423at 4088.400 kb on + strand, within Psyr_3423at 4088.400 kb on + strand, within Psyr_3423at 4088.400 kb on + strand, within Psyr_3423at 4088.401 kb on - strand, within Psyr_3423at 4088.467 kb on + strand, within Psyr_3423at 4088.656 kb on + strand, within Psyr_3423at 4088.657 kb on - strand, within Psyr_3423at 4088.657 kb on - strand, within Psyr_3423at 4088.657 kb on - strand, within Psyr_3423at 4088.789 kb on - strandat 4088.831 kb on + strandat 4088.831 kb on + strandat 4088.851 kb on + strandat 4088.852 kb on - strandat 4088.966 kb on + strand, within Psyr_3424at 4088.967 kb on - strand, within Psyr_3424at 4088.967 kb on - strand, within Psyr_3424at 4088.967 kb on - strand, within Psyr_3424at 4088.967 kb on - strand, within Psyr_3424at 4089.253 kb on + strand, within Psyr_3424at 4089.253 kb on + strand, within Psyr_3424at 4089.253 kb on + strand, within Psyr_3424at 4089.253 kb on + strand, within Psyr_3424at 4089.254 kb on - strand, within Psyr_3424at 4089.254 kb on - strand, within Psyr_3424at 4089.254 kb on - strand, within Psyr_3424at 4089.254 kb on - strand, within Psyr_3424at 4089.254 kb on - strand, within Psyr_3424at 4089.348 kb on - strandat 4089.440 kb on + strandat 4089.440 kb on + strandat 4089.440 kb on + strandat 4089.440 kb on + strandat 4089.440 kb on + strandat 4089.440 kb on + strandat 4089.441 kb on - strandat 4089.441 kb on - strandat 4089.441 kb on - strandat 4089.464 kb on + strandat 4089.464 kb on + strandat 4089.555 kb on + strand, within Psyr_3425at 4089.555 kb on + strand, within Psyr_3425at 4089.660 kb on - strand, within Psyr_3425at 4089.694 kb on + strand, within Psyr_3425at 4089.751 kb on - strandat 4090.095 kb on + strand, within Psyr_3425at 4090.096 kb on - strand, within Psyr_3425at 4090.099 kb on + strand, within Psyr_3425at 4090.146 kb on + strandat 4090.146 kb on + strandat 4090.146 kb on + strandat 4090.146 kb on + strandat 4090.146 kb on + strandat 4090.147 kb on - strandat 4090.147 kb on - strandat 4090.147 kb on - strandat 4090.147 kb on - strandat 4090.231 kb on + strandat 4090.232 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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4,087,885 + Psyr_3423 0.31 +0.5
4,087,885 + Psyr_3423 0.31 +1.8
4,087,886 - Psyr_3423 0.31 -0.1
4,088,095 + Psyr_3423 0.47 -1.2
4,088,096 - Psyr_3423 0.47 +0.3
4,088,096 - Psyr_3423 0.47 +1.1
4,088,096 - Psyr_3423 0.47 +0.4
4,088,185 + Psyr_3423 0.53 +0.3
4,088,185 + Psyr_3423 0.53 -1.2
4,088,185 + Psyr_3423 0.53 +0.8
4,088,185 + Psyr_3423 0.53 -0.4
4,088,185 + Psyr_3423 0.53 -0.4
4,088,185 + Psyr_3423 0.53 +0.8
4,088,185 + Psyr_3423 0.53 +1.1
4,088,185 + Psyr_3423 0.53 -1.2
4,088,185 + Psyr_3423 0.53 +0.2
4,088,186 - Psyr_3423 0.53 -0.9
4,088,186 - Psyr_3423 0.53 +0.9
4,088,186 - Psyr_3423 0.53 -0.5
4,088,186 - Psyr_3423 0.53 +0.4
4,088,186 - Psyr_3423 0.53 +0.6
4,088,186 - Psyr_3423 0.53 +2.1
4,088,311 + Psyr_3423 0.62 -2.6
4,088,312 - Psyr_3423 0.62 +0.6
4,088,312 - Psyr_3423 0.62 +2.6
4,088,312 - Psyr_3423 0.62 -0.5
4,088,398 + Psyr_3423 0.68 +0.2
4,088,398 + Psyr_3423 0.68 -0.3
4,088,398 + Psyr_3423 0.68 +1.2
4,088,400 + Psyr_3423 0.69 -2.1
4,088,400 + Psyr_3423 0.69 +2.4
4,088,400 + Psyr_3423 0.69 +0.7
4,088,401 - Psyr_3423 0.69 +1.6
4,088,467 + Psyr_3423 0.73 -0.8
4,088,656 + Psyr_3423 0.87 -0.3
4,088,657 - Psyr_3423 0.87 -0.3
4,088,657 - Psyr_3423 0.87 -0.2
4,088,657 - Psyr_3423 0.87 +1.7
4,088,789 - +0.6
4,088,831 + +0.5
4,088,831 + +0.2
4,088,851 + -2.4
4,088,852 - -1.1
4,088,966 + Psyr_3424 0.25 +0.1
4,088,967 - Psyr_3424 0.25 -2.1
4,088,967 - Psyr_3424 0.25 +1.1
4,088,967 - Psyr_3424 0.25 +0.1
4,088,967 - Psyr_3424 0.25 -2.2
4,089,253 + Psyr_3424 0.86 +0.1
4,089,253 + Psyr_3424 0.86 +0.9
4,089,253 + Psyr_3424 0.86 -0.0
4,089,253 + Psyr_3424 0.86 -1.2
4,089,254 - Psyr_3424 0.86 +2.1
4,089,254 - Psyr_3424 0.86 +1.1
4,089,254 - Psyr_3424 0.86 +1.1
4,089,254 - Psyr_3424 0.86 +1.8
4,089,254 - Psyr_3424 0.86 +1.8
4,089,348 - -0.9
4,089,440 + +0.2
4,089,440 + -0.4
4,089,440 + -0.1
4,089,440 + -1.1
4,089,440 + +1.1
4,089,440 + +0.4
4,089,441 - +0.6
4,089,441 - -1.1
4,089,441 - +2.3
4,089,464 + -2.2
4,089,464 + -0.0
4,089,555 + Psyr_3425 0.12 -3.7
4,089,555 + Psyr_3425 0.12 -0.4
4,089,660 - Psyr_3425 0.26 +2.3
4,089,694 + Psyr_3425 0.30 +0.1
4,089,751 - +1.7
4,090,095 + Psyr_3425 0.85 -0.6
4,090,096 - Psyr_3425 0.85 -0.1
4,090,099 + Psyr_3425 0.86 -1.0
4,090,146 + +0.4
4,090,146 + +0.6
4,090,146 + -3.4
4,090,146 + -1.2
4,090,146 + +0.8
4,090,147 - +1.5
4,090,147 - -1.7
4,090,147 - -1.5
4,090,147 - -1.3
4,090,231 + +1.8
4,090,232 - -0.2

Or see this region's nucleotide sequence