Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3394

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3392 and Psyr_3393 overlap by 4 nucleotidesPsyr_3393 and Psyr_3394 are separated by 189 nucleotidesPsyr_3394 and Psyr_3395 overlap by 1 nucleotidesPsyr_3395 and Psyr_3396 are separated by 21 nucleotides Psyr_3392: Psyr_3392 - Cytochrome c-type biogenesis protein CcmB, at 4,050,093 to 4,050,764 _3392 Psyr_3393: Psyr_3393 - Heme exporter protein CcmA, at 4,050,761 to 4,051,408 _3393 Psyr_3394: Psyr_3394 - conserved hypothetical protein, at 4,051,598 to 4,053,223 _3394 Psyr_3395: Psyr_3395 - FlhB domain protein, at 4,053,223 to 4,053,546 _3395 Psyr_3396: Psyr_3396 - DNA replication and repair protein RecR, at 4,053,568 to 4,054,170 _3396 Position (kb) 4051 4052 4053 4054Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4051.458 kb on - strandat 4051.458 kb on - strandat 4051.458 kb on - strandat 4051.458 kb on - strandat 4051.491 kb on - strandat 4051.500 kb on - strandat 4051.546 kb on - strandat 4051.546 kb on - strandat 4051.546 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4051.548 kb on - strandat 4052.064 kb on - strand, within Psyr_3394at 4052.166 kb on + strand, within Psyr_3394at 4052.166 kb on + strand, within Psyr_3394at 4052.167 kb on - strand, within Psyr_3394at 4052.167 kb on - strand, within Psyr_3394at 4052.167 kb on - strand, within Psyr_3394at 4052.558 kb on + strand, within Psyr_3394at 4053.024 kb on + strand, within Psyr_3394at 4053.024 kb on + strand, within Psyr_3394at 4053.024 kb on + strand, within Psyr_3394at 4053.025 kb on - strand, within Psyr_3394at 4053.052 kb on - strand, within Psyr_3394at 4053.052 kb on - strand, within Psyr_3394at 4053.101 kb on + strandat 4053.268 kb on + strand, within Psyr_3395at 4053.268 kb on + strand, within Psyr_3395at 4053.269 kb on - strand, within Psyr_3395at 4053.269 kb on - strand, within Psyr_3395at 4053.364 kb on + strand, within Psyr_3395at 4053.407 kb on + strand, within Psyr_3395at 4053.417 kb on + strand, within Psyr_3395at 4053.417 kb on + strand, within Psyr_3395at 4053.541 kb on + strandat 4053.707 kb on + strand, within Psyr_3396at 4053.707 kb on + strand, within Psyr_3396at 4053.707 kb on + strand, within Psyr_3396at 4053.707 kb on + strand, within Psyr_3396at 4053.707 kb on + strand, within Psyr_3396at 4053.707 kb on + strand, within Psyr_3396at 4053.707 kb on + strand, within Psyr_3396at 4053.708 kb on - strand, within Psyr_3396at 4053.708 kb on - strand, within Psyr_3396at 4053.708 kb on - strand, within Psyr_3396at 4053.863 kb on + strand, within Psyr_3396at 4053.864 kb on - strand, within Psyr_3396at 4053.897 kb on - strand, within Psyr_3396at 4053.897 kb on - strand, within Psyr_3396

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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4,051,458 - +0.3
4,051,458 - +0.9
4,051,458 - +2.0
4,051,458 - +2.2
4,051,491 - -0.4
4,051,500 - -1.2
4,051,546 - -0.1
4,051,546 - +1.1
4,051,546 - -1.8
4,051,548 - +0.2
4,051,548 - -0.7
4,051,548 - +0.3
4,051,548 - -1.7
4,051,548 - -1.5
4,051,548 - -0.3
4,051,548 - +1.6
4,051,548 - +1.8
4,051,548 - +0.3
4,051,548 - +0.1
4,051,548 - +0.3
4,051,548 - -0.1
4,051,548 - +0.7
4,051,548 - +1.9
4,051,548 - +0.3
4,051,548 - +2.1
4,051,548 - -0.5
4,051,548 - +1.1
4,052,064 - Psyr_3394 0.29 +2.5
4,052,166 + Psyr_3394 0.35 +1.1
4,052,166 + Psyr_3394 0.35 -1.9
4,052,167 - Psyr_3394 0.35 -1.1
4,052,167 - Psyr_3394 0.35 +1.1
4,052,167 - Psyr_3394 0.35 -0.3
4,052,558 + Psyr_3394 0.59 +0.7
4,053,024 + Psyr_3394 0.88 +0.2
4,053,024 + Psyr_3394 0.88 +0.3
4,053,024 + Psyr_3394 0.88 -0.3
4,053,025 - Psyr_3394 0.88 +1.0
4,053,052 - Psyr_3394 0.89 +3.0
4,053,052 - Psyr_3394 0.89 +0.1
4,053,101 + +0.9
4,053,268 + Psyr_3395 0.14 +0.9
4,053,268 + Psyr_3395 0.14 +0.4
4,053,269 - Psyr_3395 0.14 +1.1
4,053,269 - Psyr_3395 0.14 +0.6
4,053,364 + Psyr_3395 0.44 +0.7
4,053,407 + Psyr_3395 0.57 +0.5
4,053,417 + Psyr_3395 0.60 +0.8
4,053,417 + Psyr_3395 0.60 -0.2
4,053,541 + +0.2
4,053,707 + Psyr_3396 0.23 +0.7
4,053,707 + Psyr_3396 0.23 +0.9
4,053,707 + Psyr_3396 0.23 -1.2
4,053,707 + Psyr_3396 0.23 +0.5
4,053,707 + Psyr_3396 0.23 -1.4
4,053,707 + Psyr_3396 0.23 +0.1
4,053,707 + Psyr_3396 0.23 -1.1
4,053,708 - Psyr_3396 0.23 -2.6
4,053,708 - Psyr_3396 0.23 -1.4
4,053,708 - Psyr_3396 0.23 -1.9
4,053,863 + Psyr_3396 0.49 -0.1
4,053,864 - Psyr_3396 0.49 -0.8
4,053,897 - Psyr_3396 0.55 +0.2
4,053,897 - Psyr_3396 0.55 +0.1

Or see this region's nucleotide sequence