Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3357 and Psyr_3358 are separated by 99 nucleotides Psyr_3358 and Psyr_3359 are separated by 102 nucleotides Psyr_3359 and Psyr_3360 are separated by 6 nucleotides
Psyr_3357: Psyr_3357 - transcriptional regulator, LysR family, at 4,015,162 to 4,016,046
_3357
Psyr_3358: Psyr_3358 - transmembrane pair, at 4,016,146 to 4,016,625
_3358
Psyr_3359: Psyr_3359 - Phenazine biosynthesis PhzC/PhzF protein, at 4,016,728 to 4,017,561
_3359
Psyr_3360: Psyr_3360 - Major facilitator superfamily, at 4,017,568 to 4,018,719
_3360
Position (kb)
4016
4017 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4015.376 kb on + strand, within Psyr_3357 at 4015.376 kb on + strand, within Psyr_3357 at 4015.376 kb on + strand, within Psyr_3357 at 4015.377 kb on - strand, within Psyr_3357 at 4015.450 kb on - strand, within Psyr_3357 at 4015.450 kb on - strand, within Psyr_3357 at 4016.040 kb on - strand at 4016.040 kb on - strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.141 kb on + strand at 4016.142 kb on - strand at 4016.142 kb on - strand at 4016.142 kb on - strand at 4016.142 kb on - strand at 4016.142 kb on - strand at 4016.142 kb on - strand at 4016.145 kb on + strand at 4016.146 kb on - strand at 4016.152 kb on - strand at 4016.353 kb on + strand, within Psyr_3358 at 4016.353 kb on + strand, within Psyr_3358 at 4016.354 kb on - strand, within Psyr_3358 at 4016.354 kb on - strand, within Psyr_3358 at 4016.484 kb on + strand, within Psyr_3358 at 4016.546 kb on - strand, within Psyr_3358 at 4016.623 kb on + strand at 4016.623 kb on + strand at 4016.624 kb on - strand at 4016.624 kb on - strand at 4016.624 kb on - strand at 4016.624 kb on - strand at 4016.703 kb on - strand at 4016.725 kb on - strand at 4016.725 kb on - strand at 4016.725 kb on - strand at 4016.725 kb on - strand at 4016.725 kb on - strand at 4016.725 kb on - strand at 4016.741 kb on + strand at 4016.741 kb on + strand at 4016.741 kb on + strand at 4017.106 kb on - strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.144 kb on + strand, within Psyr_3359 at 4017.184 kb on - strand, within Psyr_3359 at 4017.370 kb on + strand, within Psyr_3359 at 4017.452 kb on + strand, within Psyr_3359 at 4017.453 kb on - strand, within Psyr_3359 at 4017.460 kb on - strand, within Psyr_3359 at 4017.460 kb on - strand, within Psyr_3359 at 4017.559 kb on + strand at 4017.560 kb on - strand at 4017.560 kb on - strand at 4017.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 4,015,376 + Psyr_3357 0.24 +0.2 4,015,376 + Psyr_3357 0.24 +2.8 4,015,376 + Psyr_3357 0.24 +2.1 4,015,377 - Psyr_3357 0.24 -0.3 4,015,450 - Psyr_3357 0.33 -3.2 4,015,450 - Psyr_3357 0.33 -0.8 4,016,040 - -0.4 4,016,040 - +0.9 4,016,141 + +1.3 4,016,141 + +1.5 4,016,141 + -0.2 4,016,141 + +2.4 4,016,141 + -1.5 4,016,141 + +0.6 4,016,141 + -0.1 4,016,141 + +0.6 4,016,141 + -1.9 4,016,142 - -0.8 4,016,142 - +1.0 4,016,142 - +1.4 4,016,142 - -0.0 4,016,142 - +0.5 4,016,142 - -1.2 4,016,145 + +0.1 4,016,146 - -1.5 4,016,152 - -1.5 4,016,353 + Psyr_3358 0.43 +1.1 4,016,353 + Psyr_3358 0.43 -2.1 4,016,354 - Psyr_3358 0.43 -0.5 4,016,354 - Psyr_3358 0.43 +0.9 4,016,484 + Psyr_3358 0.70 -0.9 4,016,546 - Psyr_3358 0.83 -1.5 4,016,623 + -0.6 4,016,623 + +0.5 4,016,624 - +1.1 4,016,624 - +0.0 4,016,624 - -1.5 4,016,624 - +0.9 4,016,703 - -0.5 4,016,725 - +0.8 4,016,725 - -0.0 4,016,725 - -1.0 4,016,725 - -1.6 4,016,725 - +1.1 4,016,725 - -1.2 4,016,741 + -0.8 4,016,741 + +0.1 4,016,741 + -1.2 4,017,106 - Psyr_3359 0.45 -0.7 4,017,144 + Psyr_3359 0.50 -0.8 4,017,144 + Psyr_3359 0.50 +0.8 4,017,144 + Psyr_3359 0.50 +1.3 4,017,144 + Psyr_3359 0.50 -1.5 4,017,144 + Psyr_3359 0.50 -0.3 4,017,144 + Psyr_3359 0.50 +0.0 4,017,184 - Psyr_3359 0.55 +1.1 4,017,370 + Psyr_3359 0.77 -0.5 4,017,452 + Psyr_3359 0.87 -0.7 4,017,453 - Psyr_3359 0.87 +1.0 4,017,460 - Psyr_3359 0.88 +0.9 4,017,460 - Psyr_3359 0.88 +0.4 4,017,559 + +0.7 4,017,560 - -1.9 4,017,560 - -2.6 4,017,560 - +0.2
Or see this region's nucleotide sequence