Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3341 and Psyr_3342 are separated by 196 nucleotides Psyr_3342 and Psyr_3343 are separated by 404 nucleotides Psyr_3343 and Psyr_3344 are separated by 420 nucleotides
Psyr_3341: Psyr_3341 - hypothetical protein, at 3,997,183 to 3,997,461
_3341
Psyr_3342: Psyr_3342 - conserved hypothetical protein, at 3,997,658 to 3,997,918
_3342
Psyr_3343: Psyr_3343 - GCN5-related N-acetyltransferase, at 3,998,323 to 3,998,820
_3343
Psyr_3344: Psyr_3344 - conserved hypothetical protein, at 3,999,241 to 4,000,131
_3344
Position (kb) 3998
3999 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 3997.332 kb on - strand, within Psyr_3341 at 3997.332 kb on - strand, within Psyr_3341 at 3997.334 kb on - strand, within Psyr_3341 at 3997.334 kb on - strand, within Psyr_3341 at 3997.365 kb on + strand, within Psyr_3341 at 3997.366 kb on - strand, within Psyr_3341 at 3997.393 kb on - strand, within Psyr_3341 at 3997.431 kb on + strand, within Psyr_3341 at 3997.622 kb on - strand at 3997.671 kb on + strand at 3997.671 kb on + strand at 3997.672 kb on - strand at 3997.674 kb on + strand at 3997.674 kb on + strand at 3997.675 kb on - strand at 3997.809 kb on - strand, within Psyr_3342 at 3997.809 kb on - strand, within Psyr_3342 at 3997.840 kb on + strand, within Psyr_3342 at 3997.892 kb on + strand, within Psyr_3342 at 3997.924 kb on + strand at 3997.925 kb on - strand at 3997.925 kb on - strand at 3997.932 kb on + strand at 3997.932 kb on + strand at 3997.932 kb on + strand at 3997.932 kb on + strand at 3997.932 kb on + strand at 3997.933 kb on - strand at 3997.940 kb on + strand at 3997.941 kb on - strand at 3997.941 kb on - strand at 3997.941 kb on - strand at 3997.941 kb on - strand at 3997.978 kb on + strand at 3998.038 kb on - strand at 3998.059 kb on + strand at 3998.060 kb on - strand at 3998.060 kb on - strand at 3998.060 kb on - strand at 3998.115 kb on - strand at 3998.128 kb on - strand at 3998.229 kb on + strand at 3998.325 kb on - strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.335 kb on - strand at 3998.335 kb on - strand at 3998.335 kb on - strand at 3998.335 kb on - strand at 3998.335 kb on - strand at 3998.639 kb on - strand, within Psyr_3343 at 3998.720 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.821 kb on - strand at 3998.859 kb on + strand at 3998.860 kb on - strand at 3998.861 kb on + strand at 3998.861 kb on + strand at 3998.861 kb on + strand at 3998.861 kb on + strand at 3998.861 kb on + strand at 3998.862 kb on - strand at 3998.862 kb on - strand at 3998.862 kb on - strand at 3998.862 kb on - strand at 3998.862 kb on - strand at 3998.862 kb on - strand at 3998.931 kb on - strand at 3998.975 kb on + strand at 3999.041 kb on - strand at 3999.075 kb on + strand at 3999.075 kb on + strand at 3999.076 kb on - strand at 3999.076 kb on - strand at 3999.076 kb on - strand at 3999.076 kb on - strand at 3999.076 kb on - strand at 3999.079 kb on + strand at 3999.090 kb on + strand at 3999.090 kb on + strand at 3999.091 kb on - strand at 3999.098 kb on - strand at 3999.155 kb on + strand at 3999.156 kb on - strand at 3999.156 kb on - strand at 3999.177 kb on + strand at 3999.186 kb on + strand at 3999.186 kb on + strand at 3999.186 kb on + strand at 3999.186 kb on + strand at 3999.187 kb on - strand at 3999.187 kb on - strand at 3999.187 kb on - strand at 3999.381 kb on + strand, within Psyr_3344 at 3999.382 kb on - strand, within Psyr_3344 at 3999.382 kb on - strand, within Psyr_3344 at 3999.460 kb on + strand, within Psyr_3344 at 3999.460 kb on + strand, within Psyr_3344 at 3999.460 kb on + strand, within Psyr_3344 at 3999.460 kb on + strand, within Psyr_3344 at 3999.460 kb on + strand, within Psyr_3344 at 3999.461 kb on - strand, within Psyr_3344 at 3999.461 kb on - strand, within Psyr_3344 at 3999.461 kb on - strand, within Psyr_3344 at 3999.461 kb on - strand, within Psyr_3344 at 3999.461 kb on - strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.601 kb on + strand, within Psyr_3344 at 3999.601 kb on + strand, within Psyr_3344 at 3999.601 kb on + strand, within Psyr_3344 at 3999.601 kb on + strand, within Psyr_3344 at 3999.601 kb on + strand, within Psyr_3344 at 3999.602 kb on - strand, within Psyr_3344 at 3999.670 kb on + strand, within Psyr_3344 at 3999.670 kb on + strand, within Psyr_3344 at 3999.670 kb on + strand, within Psyr_3344 at 3999.670 kb on + strand, within Psyr_3344
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 3,997,332 - Psyr_3341 0.53 +0.4 3,997,332 - Psyr_3341 0.53 -1.8 3,997,334 - Psyr_3341 0.54 +0.4 3,997,334 - Psyr_3341 0.54 +0.1 3,997,365 + Psyr_3341 0.65 -0.9 3,997,366 - Psyr_3341 0.66 +0.8 3,997,393 - Psyr_3341 0.75 -1.8 3,997,431 + Psyr_3341 0.89 -0.2 3,997,622 - +0.6 3,997,671 + -0.5 3,997,671 + -0.5 3,997,672 - -0.6 3,997,674 + +0.8 3,997,674 + +1.1 3,997,675 - +0.2 3,997,809 - Psyr_3342 0.58 -2.5 3,997,809 - Psyr_3342 0.58 +0.3 3,997,840 + Psyr_3342 0.70 -0.1 3,997,892 + Psyr_3342 0.90 +0.6 3,997,924 + -0.2 3,997,925 - +0.1 3,997,925 - +1.3 3,997,932 + -0.3 3,997,932 + +0.1 3,997,932 + -0.3 3,997,932 + +0.1 3,997,932 + -0.5 3,997,933 - -1.2 3,997,940 + +0.0 3,997,941 - -0.2 3,997,941 - +1.5 3,997,941 - -2.5 3,997,941 - -0.2 3,997,978 + +0.9 3,998,038 - +0.3 3,998,059 + +1.1 3,998,060 - -1.5 3,998,060 - +2.4 3,998,060 - -3.9 3,998,115 - -1.1 3,998,128 - +0.4 3,998,229 + -1.5 3,998,325 - +1.1 3,998,334 + -1.0 3,998,334 + -0.2 3,998,334 + -1.1 3,998,334 + -1.4 3,998,334 + -2.8 3,998,334 + +2.0 3,998,334 + +2.1 3,998,334 + -0.8 3,998,334 + -0.9 3,998,335 - -0.1 3,998,335 - +0.3 3,998,335 - +0.5 3,998,335 - -1.5 3,998,335 - +2.7 3,998,639 - Psyr_3343 0.63 -0.3 3,998,720 + Psyr_3343 0.80 -3.6 3,998,741 + Psyr_3343 0.84 +0.9 3,998,741 + Psyr_3343 0.84 +2.2 3,998,741 + Psyr_3343 0.84 +0.9 3,998,741 + Psyr_3343 0.84 -1.3 3,998,741 + Psyr_3343 0.84 -3.3 3,998,741 + Psyr_3343 0.84 +1.6 3,998,741 + Psyr_3343 0.84 -0.7 3,998,741 + Psyr_3343 0.84 -0.0 3,998,741 + Psyr_3343 0.84 +1.1 3,998,741 + Psyr_3343 0.84 +0.1 3,998,741 + Psyr_3343 0.84 +2.3 3,998,741 + Psyr_3343 0.84 +1.3 3,998,741 + Psyr_3343 0.84 +0.9 3,998,742 - Psyr_3343 0.84 +0.5 3,998,742 - Psyr_3343 0.84 +0.4 3,998,742 - Psyr_3343 0.84 +2.4 3,998,742 - Psyr_3343 0.84 +0.2 3,998,742 - Psyr_3343 0.84 +1.1 3,998,742 - Psyr_3343 0.84 +2.5 3,998,742 - Psyr_3343 0.84 +3.4 3,998,742 - Psyr_3343 0.84 +1.8 3,998,742 - Psyr_3343 0.84 -1.3 3,998,742 - Psyr_3343 0.84 +1.8 3,998,821 - -1.9 3,998,859 + -0.5 3,998,860 - +0.5 3,998,861 + +0.6 3,998,861 + +1.1 3,998,861 + -1.1 3,998,861 + +1.3 3,998,861 + +1.4 3,998,862 - +0.2 3,998,862 - -1.3 3,998,862 - -0.5 3,998,862 - -0.0 3,998,862 - -2.4 3,998,862 - -1.9 3,998,931 - +2.2 3,998,975 + +0.7 3,999,041 - +1.3 3,999,075 + -3.1 3,999,075 + +1.0 3,999,076 - +0.6 3,999,076 - -0.5 3,999,076 - +0.3 3,999,076 - +0.7 3,999,076 - +3.1 3,999,079 + +0.3 3,999,090 + -0.4 3,999,090 + +1.5 3,999,091 - -2.4 3,999,098 - -0.7 3,999,155 + -0.8 3,999,156 - -1.2 3,999,156 - +2.5 3,999,177 + +0.1 3,999,186 + -1.7 3,999,186 + +2.7 3,999,186 + +3.5 3,999,186 + +1.5 3,999,187 - +0.3 3,999,187 - -2.8 3,999,187 - -0.8 3,999,381 + Psyr_3344 0.16 +1.6 3,999,382 - Psyr_3344 0.16 -1.2 3,999,382 - Psyr_3344 0.16 +0.7 3,999,460 + Psyr_3344 0.25 +1.3 3,999,460 + Psyr_3344 0.25 +0.7 3,999,460 + Psyr_3344 0.25 -1.9 3,999,460 + Psyr_3344 0.25 +0.3 3,999,460 + Psyr_3344 0.25 +0.6 3,999,461 - Psyr_3344 0.25 -0.6 3,999,461 - Psyr_3344 0.25 -0.3 3,999,461 - Psyr_3344 0.25 -1.2 3,999,461 - Psyr_3344 0.25 -0.7 3,999,461 - Psyr_3344 0.25 -0.1 3,999,599 + Psyr_3344 0.40 +0.8 3,999,599 + Psyr_3344 0.40 -0.1 3,999,599 + Psyr_3344 0.40 +0.2 3,999,599 + Psyr_3344 0.40 +1.1 3,999,599 + Psyr_3344 0.40 -0.1 3,999,599 + Psyr_3344 0.40 +0.0 3,999,599 + Psyr_3344 0.40 +2.3 3,999,599 + Psyr_3344 0.40 -0.5 3,999,599 + Psyr_3344 0.40 +0.5 3,999,599 + Psyr_3344 0.40 +3.1 3,999,599 + Psyr_3344 0.40 -0.1 3,999,599 + Psyr_3344 0.40 -0.3 3,999,600 - Psyr_3344 0.40 +0.7 3,999,600 - Psyr_3344 0.40 +0.4 3,999,600 - Psyr_3344 0.40 -1.1 3,999,600 - Psyr_3344 0.40 +0.9 3,999,600 - Psyr_3344 0.40 +1.9 3,999,600 - Psyr_3344 0.40 -1.6 3,999,600 - Psyr_3344 0.40 -1.9 3,999,600 - Psyr_3344 0.40 +0.8 3,999,600 - Psyr_3344 0.40 +0.4 3,999,600 - Psyr_3344 0.40 -0.6 3,999,600 - Psyr_3344 0.40 +0.3 3,999,601 + Psyr_3344 0.40 +0.8 3,999,601 + Psyr_3344 0.40 -0.0 3,999,601 + Psyr_3344 0.40 +0.1 3,999,601 + Psyr_3344 0.40 +0.9 3,999,601 + Psyr_3344 0.40 -0.0 3,999,602 - Psyr_3344 0.41 -1.2 3,999,670 + Psyr_3344 0.48 -0.9 3,999,670 + Psyr_3344 0.48 -1.0 3,999,670 + Psyr_3344 0.48 +0.8 3,999,670 + Psyr_3344 0.48 -0.3
Or see this region's nucleotide sequence