Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3336

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
3,990,399	-		Psyr_3335	0.38	-0.2
3,990,545	+		Psyr_3335	0.53	-0.6
3,990,545	+		Psyr_3335	0.53	-0.7
3,990,545	+		Psyr_3335	0.53	+0.6
3,990,546	-		Psyr_3335	0.53	+0.8
3,990,546	-		Psyr_3335	0.53	+0.1
3,990,607	-		Psyr_3335	0.60	+3.1
3,990,658	+		Psyr_3335	0.65	-1.5
3,990,659	-				+0.5
3,990,659	-		Psyr_3335	0.65	+0.3
3,990,659	-		Psyr_3335	0.65	+0.1
3,990,695	+		Psyr_3335	0.69	+0.1
3,990,695	+		Psyr_3335	0.69	-2.5
3,990,695	+		Psyr_3335	0.69	+0.2
3,990,696	-		Psyr_3335	0.69	-1.4
3,990,696	-		Psyr_3335	0.69	+0.5
3,990,719	+		Psyr_3335	0.71	+1.1
3,990,719	+		Psyr_3335	0.71	-1.4
3,990,719	+		Psyr_3335	0.71	+2.0
3,990,720	-		Psyr_3335	0.71	-1.0
3,990,748	-		Psyr_3335	0.74	-0.8
3,990,842	+		Psyr_3335	0.84	-0.6
3,990,842	+		Psyr_3335	0.84	+0.6
3,990,842	+		Psyr_3335	0.84	-0.7
3,990,842	+		Psyr_3335	0.84	-0.4
3,990,842	+		Psyr_3335	0.84	+0.2
3,990,842	+		Psyr_3335	0.84	-1.0
3,990,842	+		Psyr_3335	0.84	+0.2
3,990,842	+		Psyr_3335	0.84	+1.1
3,990,842	+		Psyr_3335	0.84	-0.4
3,990,842	+		Psyr_3335	0.84	+1.1
3,990,842	+		Psyr_3335	0.84	+3.7
3,990,843	-		Psyr_3335	0.84	-2.6
3,990,843	-		Psyr_3335	0.84	-1.4
3,990,843	-		Psyr_3335	0.84	+0.2
3,990,843	-		Psyr_3335	0.84	+0.4
3,990,843	-		Psyr_3335	0.84	-2.7
3,990,843	-		Psyr_3335	0.84	-0.1
3,990,843	-		Psyr_3335	0.84	+0.7
3,990,843	-		Psyr_3335	0.84	-0.0
3,990,843	-		Psyr_3335	0.84	+0.9
3,990,843	-		Psyr_3335	0.84	+2.4
3,990,843	-		Psyr_3335	0.84	-0.9
3,990,843	-		Psyr_3335	0.84	+0.7
3,990,843	-		Psyr_3335	0.84	+1.1
3,990,843	-		Psyr_3335	0.84	-0.1
3,990,883	+		Psyr_3335	0.88	-0.5
3,991,016	+				-1.9
3,991,016	+				-0.9
3,991,016	+				+0.3
3,991,017	-				+2.7
3,991,017	-				+3.4
3,991,025	+				+0.1
3,991,025	+				-0.9
3,991,046	+				-0.1
3,991,046	+				-1.2
3,991,047	-				+1.6
3,991,047	-				+2.5
3,991,050	+				-0.7
3,991,050	+				+0.1
3,991,051	-				-0.9
3,991,051	-				-1.5
3,991,058	+				-1.9
3,991,058	+				+0.9
3,991,058	+				-1.2
3,991,058	+				+0.5
3,991,058	+				+1.7
3,991,058	+				+0.5
3,991,058	+				+1.7
3,991,058	+				+0.3
3,991,058	+				-0.3
3,991,058	+				+0.7
3,991,058	+				-0.0
3,991,058	+				+0.2
3,991,058	+				-0.5
3,991,058	+				-0.2
3,991,058	+				+4.1
3,991,059	-				-0.9
3,991,059	-				+0.1
3,991,059	-				+1.3
3,991,059	-				+0.1
3,991,059	-				+0.2
3,991,059	-				-2.7
3,991,059	-				-0.4
3,991,059	-				+0.4
3,991,059	-				-0.4
3,991,059	-				+1.6
3,991,059	-				+2.1
3,991,059	-				-1.7
3,991,059	-				-1.7
3,991,060	+				+0.1
3,991,060	+				+2.1
3,991,061	-				-0.8
3,991,061	-				+0.1
3,991,094	+				+1.1
3,991,094	+				+1.2
3,991,094	+				-0.1
3,991,094	+				+0.4
3,991,094	+				-2.2
3,991,095	-				+0.8
3,991,095	-				-1.1
3,991,095	-				+0.3
3,991,095	-				-0.2
3,991,118	-				-0.2
3,991,130	+				-0.5
3,991,131	-				-1.3
3,991,131	-				-0.8
3,991,151	+				-0.9
3,991,163	+				-0.7
3,991,164	-				+0.9
3,991,164	-				+0.3
3,991,270	+				+0.5
3,991,410	-				-1.6
3,991,773	+		Psyr_3336	0.44	+0.4
3,991,773	+		Psyr_3336	0.44	+2.2
3,991,773	+		Psyr_3336	0.44	-0.4
3,991,774	-		Psyr_3336	0.44	-1.6
3,991,774	-		Psyr_3336	0.44	-0.3
3,991,774	-		Psyr_3336	0.44	+1.1
3,991,774	-		Psyr_3336	0.44	+0.7
3,991,898	+		Psyr_3336	0.56	+0.7
3,991,898	+		Psyr_3336	0.56	+1.1
3,991,899	-		Psyr_3336	0.56	+0.5
3,991,900	+		Psyr_3336	0.56	+0.7
3,991,900	+		Psyr_3336	0.56	+0.2
3,991,901	-		Psyr_3336	0.56	+0.8
3,991,961	-		Psyr_3336	0.62	-1.0
3,992,020	-		Psyr_3336	0.68	+1.3
3,992,026	-		Psyr_3336	0.69	+2.9
3,992,026	-		Psyr_3336	0.69	+1.6
3,992,026	-		Psyr_3336	0.69	+0.7
3,992,177	+		Psyr_3336	0.83	-1.5
3,992,177	+		Psyr_3336	0.83	-1.4
3,992,178	-		Psyr_3336	0.84	+0.4
3,992,182	-		Psyr_3336	0.84	+1.9
3,992,339	+				+2.5
3,992,356	+				+0.1
3,992,356	+				-1.5
3,992,356	+				+0.5
3,992,357	-				-0.8
3,992,357	-				+0.4
3,992,357	-				-2.1
3,992,361	+				+0.6
3,992,362	-				-0.6
3,992,362	-				+1.8
3,992,362	-				+1.0
3,992,488	-				-0.3
3,992,514	+				+2.4
3,992,514	+				-1.1
3,992,515	-				+0.1
3,992,603	+				-1.9
3,992,603	+				+0.3
3,992,604	-				+0.8
3,992,604	-				+1.1
3,992,609	+				+2.4
3,992,610	-				-1.0
3,992,610	-				+0.2
3,992,868	+		Psyr_3337	0.53	+0.1
3,992,869	-		Psyr_3337	0.53	-0.5
3,992,912	-		Psyr_3337	0.61	-0.4
3,992,912	-		Psyr_3337	0.61	+0.8
3,993,308	+				-0.4
3,993,308	+				+2.1
3,993,308	+				+0.3
3,993,308	+				+0.3
3,993,309	-				-0.6
3,993,313	-				+0.3
3,993,313	-				-0.5
3,993,321	+				+3.4
3,993,333	-				+0.1
3,993,340	+				-1.0
3,993,341	-				+2.6
3,993,341	-				+0.9