Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3269

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3268 and Psyr_3269 are separated by 68 nucleotidesPsyr_3269 and Psyr_3270 are separated by 42 nucleotidesPsyr_3270 and Psyr_3271 are separated by 35 nucleotides Psyr_3268: Psyr_3268 - myo-inositol 2-dehydrogenase, at 3,913,469 to 3,914,479 _3268 Psyr_3269: Psyr_3269 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, at 3,914,548 to 3,916,485 _3269 Psyr_3270: Psyr_3270 - AP endonuclease, family 2, at 3,916,528 to 3,917,358 _3270 Psyr_3271: Psyr_3271 - methylmalonate-semialdehyde dehydrogenase (acylating), at 3,917,394 to 3,918,896 _3271 Position (kb) 3914 3915 3916 3917Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3913.566 kb on + strandat 3913.782 kb on + strand, within Psyr_3268at 3913.782 kb on + strand, within Psyr_3268at 3913.799 kb on + strand, within Psyr_3268at 3913.800 kb on - strand, within Psyr_3268at 3913.879 kb on + strand, within Psyr_3268at 3913.895 kb on + strand, within Psyr_3268at 3913.896 kb on - strand, within Psyr_3268at 3913.896 kb on - strand, within Psyr_3268at 3913.914 kb on + strand, within Psyr_3268at 3913.914 kb on + strand, within Psyr_3268at 3913.914 kb on + strand, within Psyr_3268at 3913.914 kb on + strand, within Psyr_3268at 3913.914 kb on + strand, within Psyr_3268at 3913.915 kb on - strand, within Psyr_3268at 3913.940 kb on + strand, within Psyr_3268at 3913.957 kb on + strand, within Psyr_3268at 3913.958 kb on - strand, within Psyr_3268at 3913.958 kb on - strand, within Psyr_3268at 3913.990 kb on - strand, within Psyr_3268at 3913.990 kb on - strand, within Psyr_3268at 3914.117 kb on + strand, within Psyr_3268at 3914.118 kb on - strand, within Psyr_3268at 3914.235 kb on + strand, within Psyr_3268at 3914.235 kb on + strand, within Psyr_3268at 3914.235 kb on + strand, within Psyr_3268at 3914.235 kb on + strand, within Psyr_3268at 3914.235 kb on + strand, within Psyr_3268at 3914.235 kb on + strand, within Psyr_3268at 3914.235 kb on + strand, within Psyr_3268at 3914.235 kb on + strand, within Psyr_3268at 3914.235 kb on + strand, within Psyr_3268at 3914.235 kb on + strand, within Psyr_3268at 3914.236 kb on - strand, within Psyr_3268at 3914.236 kb on - strand, within Psyr_3268at 3914.236 kb on - strand, within Psyr_3268at 3914.316 kb on + strand, within Psyr_3268at 3914.316 kb on + strand, within Psyr_3268at 3914.317 kb on - strand, within Psyr_3268at 3914.317 kb on - strand, within Psyr_3268at 3914.317 kb on - strand, within Psyr_3268at 3914.508 kb on + strandat 3914.540 kb on - strandat 3914.654 kb on + strandat 3914.654 kb on + strandat 3914.655 kb on - strandat 3914.655 kb on - strandat 3914.765 kb on + strand, within Psyr_3269at 3914.765 kb on + strand, within Psyr_3269at 3914.765 kb on + strand, within Psyr_3269at 3914.765 kb on + strand, within Psyr_3269at 3914.765 kb on + strand, within Psyr_3269at 3914.765 kb on + strand, within Psyr_3269at 3914.766 kb on - strand, within Psyr_3269at 3914.766 kb on - strand, within Psyr_3269at 3914.781 kb on - strand, within Psyr_3269at 3914.922 kb on + strand, within Psyr_3269at 3914.922 kb on + strand, within Psyr_3269at 3914.923 kb on - strand, within Psyr_3269at 3914.923 kb on - strand, within Psyr_3269at 3914.923 kb on - strand, within Psyr_3269at 3914.996 kb on + strand, within Psyr_3269at 3914.996 kb on + strand, within Psyr_3269at 3914.996 kb on + strand, within Psyr_3269at 3914.996 kb on + strand, within Psyr_3269at 3914.996 kb on + strand, within Psyr_3269at 3914.996 kb on + strand, within Psyr_3269at 3914.997 kb on - strand, within Psyr_3269at 3914.997 kb on - strand, within Psyr_3269at 3914.997 kb on - strand, within Psyr_3269at 3914.997 kb on - strand, within Psyr_3269at 3914.997 kb on - strand, within Psyr_3269at 3914.997 kb on - strand, within Psyr_3269at 3914.997 kb on - strand, within Psyr_3269at 3914.997 kb on - strand, within Psyr_3269at 3914.997 kb on - strand, within Psyr_3269at 3915.095 kb on + strand, within Psyr_3269at 3915.096 kb on - strand, within Psyr_3269at 3915.096 kb on - strand, within Psyr_3269at 3915.107 kb on + strand, within Psyr_3269at 3915.108 kb on - strand, within Psyr_3269at 3915.108 kb on - strand, within Psyr_3269at 3915.108 kb on - strand, within Psyr_3269at 3915.108 kb on - strand, within Psyr_3269at 3915.108 kb on - strand, within Psyr_3269at 3915.108 kb on - strand, within Psyr_3269at 3915.111 kb on + strand, within Psyr_3269at 3915.111 kb on + strand, within Psyr_3269at 3915.111 kb on + strand, within Psyr_3269at 3915.112 kb on - strand, within Psyr_3269at 3915.116 kb on - strand, within Psyr_3269at 3915.116 kb on - strand, within Psyr_3269at 3915.116 kb on - strand, within Psyr_3269at 3915.811 kb on + strand, within Psyr_3269at 3915.811 kb on + strand, within Psyr_3269at 3915.811 kb on + strand, within Psyr_3269at 3915.812 kb on - strand, within Psyr_3269at 3915.812 kb on - strand, within Psyr_3269at 3915.812 kb on - strand, within Psyr_3269at 3915.812 kb on - strand, within Psyr_3269at 3915.812 kb on - strand, within Psyr_3269at 3915.812 kb on - strand, within Psyr_3269at 3915.812 kb on - strand, within Psyr_3269at 3915.903 kb on - strandat 3916.031 kb on + strand, within Psyr_3269at 3916.427 kb on + strandat 3916.428 kb on - strandat 3916.428 kb on - strandat 3916.479 kb on + strandat 3916.479 kb on + strandat 3916.479 kb on + strandat 3916.479 kb on + strandat 3916.479 kb on + strandat 3916.480 kb on - strandat 3916.480 kb on - strandat 3916.480 kb on - strandat 3916.480 kb on - strandat 3916.647 kb on - strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.774 kb on + strand, within Psyr_3270at 3916.774 kb on + strand, within Psyr_3270at 3916.774 kb on + strand, within Psyr_3270at 3916.774 kb on + strand, within Psyr_3270at 3916.774 kb on + strand, within Psyr_3270at 3916.774 kb on + strand, within Psyr_3270at 3916.774 kb on + strand, within Psyr_3270at 3916.775 kb on - strand, within Psyr_3270at 3916.775 kb on - strand, within Psyr_3270at 3916.775 kb on - strand, within Psyr_3270at 3916.775 kb on - strand, within Psyr_3270at 3916.775 kb on - strand, within Psyr_3270at 3917.171 kb on - strand, within Psyr_3270at 3917.395 kb on + strandat 3917.395 kb on + strandat 3917.396 kb on - strandat 3917.396 kb on - strandat 3917.477 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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3,913,566 + +0.4
3,913,782 + Psyr_3268 0.31 +0.9
3,913,782 + Psyr_3268 0.31 +0.2
3,913,799 + Psyr_3268 0.33 +0.4
3,913,800 - Psyr_3268 0.33 -0.6
3,913,879 + Psyr_3268 0.41 -0.1
3,913,895 + Psyr_3268 0.42 -0.2
3,913,896 - Psyr_3268 0.42 -1.4
3,913,896 - Psyr_3268 0.42 -0.5
3,913,914 + Psyr_3268 0.44 -0.9
3,913,914 + Psyr_3268 0.44 +0.8
3,913,914 + Psyr_3268 0.44 +0.3
3,913,914 + Psyr_3268 0.44 -1.5
3,913,914 + Psyr_3268 0.44 -0.7
3,913,915 - Psyr_3268 0.44 -0.8
3,913,940 + Psyr_3268 0.47 +1.1
3,913,957 + Psyr_3268 0.48 -0.6
3,913,958 - Psyr_3268 0.48 +0.2
3,913,958 - Psyr_3268 0.48 -0.8
3,913,990 - Psyr_3268 0.52 -0.4
3,913,990 - Psyr_3268 0.52 +0.6
3,914,117 + Psyr_3268 0.64 +1.3
3,914,118 - Psyr_3268 0.64 +1.1
3,914,235 + Psyr_3268 0.76 -1.3
3,914,235 + Psyr_3268 0.76 -0.3
3,914,235 + Psyr_3268 0.76 -0.8
3,914,235 + Psyr_3268 0.76 -1.3
3,914,235 + Psyr_3268 0.76 -0.9
3,914,235 + Psyr_3268 0.76 -0.5
3,914,235 + Psyr_3268 0.76 +1.7
3,914,235 + Psyr_3268 0.76 +1.1
3,914,235 + Psyr_3268 0.76 +2.1
3,914,235 + Psyr_3268 0.76 +0.6
3,914,236 - Psyr_3268 0.76 +2.6
3,914,236 - Psyr_3268 0.76 +1.1
3,914,236 - Psyr_3268 0.76 -3.3
3,914,316 + Psyr_3268 0.84 +1.8
3,914,316 + Psyr_3268 0.84 +1.5
3,914,317 - Psyr_3268 0.84 -1.3
3,914,317 - Psyr_3268 0.84 -0.4
3,914,317 - Psyr_3268 0.84 +1.1
3,914,508 + +1.3
3,914,540 - -0.4
3,914,654 + +0.3
3,914,654 + +0.8
3,914,655 - -0.1
3,914,655 - +0.3
3,914,765 + Psyr_3269 0.11 -0.5
3,914,765 + Psyr_3269 0.11 +0.1
3,914,765 + Psyr_3269 0.11 -0.9
3,914,765 + Psyr_3269 0.11 -0.9
3,914,765 + Psyr_3269 0.11 +0.7
3,914,765 + Psyr_3269 0.11 -1.6
3,914,766 - Psyr_3269 0.11 -0.5
3,914,766 - Psyr_3269 0.11 +0.2
3,914,781 - Psyr_3269 0.12 -1.5
3,914,922 + Psyr_3269 0.19 -1.3
3,914,922 + Psyr_3269 0.19 -1.5
3,914,923 - Psyr_3269 0.19 -0.9
3,914,923 - Psyr_3269 0.19 -1.5
3,914,923 - Psyr_3269 0.19 +0.1
3,914,996 + Psyr_3269 0.23 +0.4
3,914,996 + Psyr_3269 0.23 +1.1
3,914,996 + Psyr_3269 0.23 +0.6
3,914,996 + Psyr_3269 0.23 -0.3
3,914,996 + Psyr_3269 0.23 +2.1
3,914,996 + Psyr_3269 0.23 -0.4
3,914,997 - Psyr_3269 0.23 +2.6
3,914,997 - Psyr_3269 0.23 -2.4
3,914,997 - Psyr_3269 0.23 +0.6
3,914,997 - Psyr_3269 0.23 +0.9
3,914,997 - Psyr_3269 0.23 -0.0
3,914,997 - Psyr_3269 0.23 +0.8
3,914,997 - Psyr_3269 0.23 -2.3
3,914,997 - Psyr_3269 0.23 -0.6
3,914,997 - Psyr_3269 0.23 -1.1
3,915,095 + Psyr_3269 0.28 -0.4
3,915,096 - Psyr_3269 0.28 -2.6
3,915,096 - Psyr_3269 0.28 -1.2
3,915,107 + Psyr_3269 0.29 -0.5
3,915,108 - Psyr_3269 0.29 +0.1
3,915,108 - Psyr_3269 0.29 +0.3
3,915,108 - Psyr_3269 0.29 +0.1
3,915,108 - Psyr_3269 0.29 +1.1
3,915,108 - Psyr_3269 0.29 -4.1
3,915,108 - Psyr_3269 0.29 -1.3
3,915,111 + Psyr_3269 0.29 +0.5
3,915,111 + Psyr_3269 0.29 -0.5
3,915,111 + Psyr_3269 0.29 -1.0
3,915,112 - Psyr_3269 0.29 -1.3
3,915,116 - Psyr_3269 0.29 +0.5
3,915,116 - Psyr_3269 0.29 -0.8
3,915,116 - Psyr_3269 0.29 -2.0
3,915,811 + Psyr_3269 0.65 +1.1
3,915,811 + Psyr_3269 0.65 +0.1
3,915,811 + Psyr_3269 0.65 +0.6
3,915,812 - Psyr_3269 0.65 -2.3
3,915,812 - Psyr_3269 0.65 +0.6
3,915,812 - Psyr_3269 0.65 +1.5
3,915,812 - Psyr_3269 0.65 +0.9
3,915,812 - Psyr_3269 0.65 -0.2
3,915,812 - Psyr_3269 0.65 +0.9
3,915,812 - Psyr_3269 0.65 -1.7
3,915,903 - +1.1
3,916,031 + Psyr_3269 0.77 -1.1
3,916,427 + +3.2
3,916,428 - -0.0
3,916,428 - -0.9
3,916,479 + -0.6
3,916,479 + -0.9
3,916,479 + -0.2
3,916,479 + +0.4
3,916,479 + +0.6
3,916,480 - +0.9
3,916,480 - +0.4
3,916,480 - +0.0
3,916,480 - -1.3
3,916,647 - Psyr_3270 0.14 -0.5
3,916,770 + Psyr_3270 0.29 -2.3
3,916,770 + Psyr_3270 0.29 +1.3
3,916,770 + Psyr_3270 0.29 -0.1
3,916,770 + Psyr_3270 0.29 -0.7
3,916,770 + Psyr_3270 0.29 -0.4
3,916,770 + Psyr_3270 0.29 +0.2
3,916,770 + Psyr_3270 0.29 +0.5
3,916,770 + Psyr_3270 0.29 +0.4
3,916,770 + Psyr_3270 0.29 -2.5
3,916,771 - Psyr_3270 0.29 +1.4
3,916,771 - Psyr_3270 0.29 +3.6
3,916,771 - Psyr_3270 0.29 +1.6
3,916,771 - Psyr_3270 0.29 +1.1
3,916,771 - Psyr_3270 0.29 +1.1
3,916,771 - Psyr_3270 0.29 -0.6
3,916,771 - Psyr_3270 0.29 -1.5
3,916,771 - Psyr_3270 0.29 +3.4
3,916,771 - Psyr_3270 0.29 +1.5
3,916,774 + Psyr_3270 0.30 +0.7
3,916,774 + Psyr_3270 0.30 +1.5
3,916,774 + Psyr_3270 0.30 +0.2
3,916,774 + Psyr_3270 0.30 +0.1
3,916,774 + Psyr_3270 0.30 -0.0
3,916,774 + Psyr_3270 0.30 -1.5
3,916,774 + Psyr_3270 0.30 -0.3
3,916,775 - Psyr_3270 0.30 +1.5
3,916,775 - Psyr_3270 0.30 -0.5
3,916,775 - Psyr_3270 0.30 -0.3
3,916,775 - Psyr_3270 0.30 -1.1
3,916,775 - Psyr_3270 0.30 +1.4
3,917,171 - Psyr_3270 0.77 -0.4
3,917,395 + -0.1
3,917,395 + -0.1
3,917,396 - -1.0
3,917,396 - -1.2
3,917,477 - +0.5

Or see this region's nucleotide sequence