Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3236 and Psyr_3237 are separated by 129 nucleotides Psyr_3237 and Psyr_3238 are separated by 42 nucleotides Psyr_3238 and Psyr_3239 are separated by 234 nucleotides
Psyr_3236: Psyr_3236 - transcriptional regulator, LysR family, at 3,874,607 to 3,875,497
_3236
Psyr_3237: Psyr_3237 - 3-oxoacid CoA-transferase, at 3,875,627 to 3,876,328
_3237
Psyr_3238: Psyr_3238 - 3-oxoacid CoA-transferase, at 3,876,371 to 3,877,027
_3238
Psyr_3239: Psyr_3239 - Short chain fatty acid transporter, at 3,877,262 to 3,878,680
_3239
Position (kb) 3876
3877
3878 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3875.454 kb on + strand at 3875.498 kb on - strand at 3875.499 kb on + strand at 3875.609 kb on + strand at 3875.609 kb on + strand at 3875.609 kb on + strand at 3875.609 kb on + strand at 3875.610 kb on - strand at 3875.610 kb on - strand at 3875.611 kb on + strand at 3875.611 kb on + strand at 3875.611 kb on + strand at 3875.611 kb on + strand at 3875.611 kb on + strand at 3875.612 kb on - strand at 3875.612 kb on - strand at 3875.612 kb on - strand at 3875.612 kb on - strand at 3875.612 kb on - strand at 3875.612 kb on - strand at 3875.612 kb on - strand at 3875.612 kb on - strand at 3875.612 kb on - strand at 3875.657 kb on + strand at 3875.658 kb on - strand at 3875.658 kb on - strand at 3875.865 kb on - strand, within Psyr_3237 at 3875.987 kb on + strand, within Psyr_3237 at 3875.987 kb on + strand, within Psyr_3237 at 3875.988 kb on - strand, within Psyr_3237 at 3875.988 kb on - strand, within Psyr_3237 at 3875.988 kb on - strand, within Psyr_3237 at 3875.988 kb on - strand, within Psyr_3237 at 3876.134 kb on + strand, within Psyr_3237 at 3876.134 kb on + strand, within Psyr_3237 at 3876.135 kb on - strand, within Psyr_3237 at 3876.135 kb on - strand, within Psyr_3237 at 3876.135 kb on - strand, within Psyr_3237 at 3876.143 kb on - strand, within Psyr_3237 at 3876.260 kb on + strand at 3876.260 kb on + strand at 3876.260 kb on + strand at 3876.261 kb on - strand at 3876.261 kb on - strand at 3876.261 kb on - strand at 3876.261 kb on - strand at 3876.261 kb on - strand at 3876.261 kb on - strand at 3876.276 kb on + strand at 3876.277 kb on - strand at 3876.346 kb on + strand at 3876.432 kb on - strand at 3876.432 kb on - strand at 3876.432 kb on - strand at 3876.432 kb on - strand at 3876.473 kb on + strand, within Psyr_3238 at 3876.473 kb on + strand, within Psyr_3238 at 3876.473 kb on + strand, within Psyr_3238 at 3876.473 kb on + strand, within Psyr_3238 at 3876.473 kb on + strand, within Psyr_3238 at 3876.473 kb on + strand, within Psyr_3238 at 3876.473 kb on + strand, within Psyr_3238 at 3876.473 kb on + strand, within Psyr_3238 at 3876.473 kb on + strand, within Psyr_3238 at 3876.473 kb on + strand, within Psyr_3238 at 3876.473 kb on + strand, within Psyr_3238 at 3876.473 kb on + strand, within Psyr_3238 at 3876.473 kb on + strand, within Psyr_3238 at 3876.473 kb on + strand, within Psyr_3238 at 3876.473 kb on + strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.474 kb on - strand, within Psyr_3238 at 3876.477 kb on + strand, within Psyr_3238 at 3876.477 kb on + strand, within Psyr_3238 at 3876.478 kb on - strand, within Psyr_3238 at 3876.673 kb on - strand, within Psyr_3238 at 3877.208 kb on + strand at 3877.238 kb on + strand at 3877.238 kb on + strand at 3877.239 kb on - strand at 3877.242 kb on + strand at 3877.242 kb on + strand at 3877.275 kb on + strand at 3877.275 kb on + strand at 3877.275 kb on + strand at 3877.275 kb on + strand at 3877.276 kb on - strand at 3877.276 kb on - strand at 3877.276 kb on - strand at 3877.276 kb on - strand at 3877.276 kb on - strand at 3877.276 kb on - strand at 3877.350 kb on + strand at 3877.496 kb on + strand, within Psyr_3239 at 3877.715 kb on + strand, within Psyr_3239 at 3877.715 kb on + strand, within Psyr_3239
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 3,875,454 + +1.3 3,875,498 - -1.3 3,875,499 + +0.1 3,875,609 + -0.0 3,875,609 + +0.2 3,875,609 + -0.1 3,875,609 + +0.2 3,875,610 - -0.5 3,875,610 - +0.9 3,875,611 + -0.2 3,875,611 + +0.4 3,875,611 + -3.1 3,875,611 + +0.2 3,875,611 + +0.1 3,875,612 - +1.7 3,875,612 - -1.5 3,875,612 - +0.5 3,875,612 - +0.7 3,875,612 - -0.6 3,875,612 - +1.1 3,875,612 - +0.5 3,875,612 - +0.1 3,875,612 - +0.5 3,875,657 + -0.8 3,875,658 - -1.5 3,875,658 - +0.4 3,875,865 - Psyr_3237 0.34 +1.0 3,875,987 + Psyr_3237 0.51 -0.7 3,875,987 + Psyr_3237 0.51 -0.6 3,875,988 - Psyr_3237 0.51 +0.4 3,875,988 - Psyr_3237 0.51 +0.2 3,875,988 - Psyr_3237 0.51 -0.3 3,875,988 - Psyr_3237 0.51 -0.7 3,876,134 + Psyr_3237 0.72 +0.4 3,876,134 + Psyr_3237 0.72 +2.1 3,876,135 - Psyr_3237 0.72 +0.7 3,876,135 - Psyr_3237 0.72 +0.7 3,876,135 - Psyr_3237 0.72 -2.7 3,876,143 - Psyr_3237 0.74 +0.0 3,876,260 + -2.3 3,876,260 + +0.2 3,876,260 + +1.2 3,876,261 - +0.7 3,876,261 - -0.5 3,876,261 - -0.4 3,876,261 - +2.1 3,876,261 - -2.3 3,876,261 - +1.5 3,876,276 + -0.3 3,876,277 - +0.1 3,876,346 + +0.1 3,876,432 - -0.4 3,876,432 - +2.7 3,876,432 - +0.4 3,876,432 - +0.7 3,876,473 + Psyr_3238 0.16 +1.9 3,876,473 + Psyr_3238 0.16 -2.1 3,876,473 + Psyr_3238 0.16 +0.1 3,876,473 + Psyr_3238 0.16 -0.3 3,876,473 + Psyr_3238 0.16 -1.2 3,876,473 + Psyr_3238 0.16 -0.8 3,876,473 + Psyr_3238 0.16 +1.1 3,876,473 + Psyr_3238 0.16 -1.3 3,876,473 + Psyr_3238 0.16 +0.1 3,876,473 + Psyr_3238 0.16 +1.1 3,876,473 + Psyr_3238 0.16 -0.4 3,876,473 + Psyr_3238 0.16 -0.7 3,876,473 + Psyr_3238 0.16 -0.7 3,876,473 + Psyr_3238 0.16 -0.9 3,876,473 + Psyr_3238 0.16 -1.3 3,876,474 - Psyr_3238 0.16 -0.6 3,876,474 - Psyr_3238 0.16 +0.6 3,876,474 - Psyr_3238 0.16 +0.1 3,876,474 - Psyr_3238 0.16 +0.3 3,876,474 - Psyr_3238 0.16 +0.5 3,876,474 - Psyr_3238 0.16 +0.4 3,876,474 - Psyr_3238 0.16 -1.5 3,876,474 - Psyr_3238 0.16 -0.1 3,876,474 - Psyr_3238 0.16 +0.1 3,876,474 - Psyr_3238 0.16 -1.3 3,876,474 - Psyr_3238 0.16 -0.5 3,876,474 - Psyr_3238 0.16 -0.6 3,876,474 - Psyr_3238 0.16 -2.3 3,876,474 - Psyr_3238 0.16 -0.4 3,876,474 - Psyr_3238 0.16 -0.4 3,876,474 - Psyr_3238 0.16 +0.2 3,876,474 - Psyr_3238 0.16 -0.4 3,876,477 + Psyr_3238 0.16 +1.1 3,876,477 + Psyr_3238 0.16 -1.7 3,876,478 - Psyr_3238 0.16 +1.1 3,876,673 - Psyr_3238 0.46 -0.9 3,877,208 + +0.2 3,877,238 + -0.5 3,877,238 + -1.5 3,877,239 - +1.1 3,877,242 + -1.3 3,877,242 + -1.3 3,877,275 + +2.1 3,877,275 + +0.7 3,877,275 + -1.1 3,877,275 + +0.4 3,877,276 - +0.7 3,877,276 - -1.0 3,877,276 - +2.7 3,877,276 - +3.1 3,877,276 - +0.1 3,877,276 - -1.5 3,877,350 + -0.9 3,877,496 + Psyr_3239 0.16 +1.1 3,877,715 + Psyr_3239 0.32 +0.1 3,877,715 + Psyr_3239 0.32 -0.1
Or see this region's nucleotide sequence