Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3191

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3190 and Psyr_3191 overlap by 1 nucleotidesPsyr_3191 and Psyr_3192 are separated by 83 nucleotides Psyr_3190: Psyr_3190 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 3,819,564 to 3,820,694 _3190 Psyr_3191: Psyr_3191 - Protein of unknown function DUF489, at 3,820,694 to 3,821,314 _3191 Psyr_3192: Psyr_3192 - Adenylosuccinate lyase, at 3,821,398 to 3,822,816 _3192 Position (kb) 3820 3821 3822Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3820.734 kb on + strandat 3820.735 kb on - strandat 3820.735 kb on - strandat 3820.841 kb on - strand, within Psyr_3191at 3821.099 kb on + strand, within Psyr_3191at 3821.099 kb on + strand, within Psyr_3191at 3821.099 kb on + strand, within Psyr_3191at 3821.100 kb on - strand, within Psyr_3191at 3821.100 kb on - strand, within Psyr_3191at 3821.139 kb on + strand, within Psyr_3191at 3821.139 kb on + strand, within Psyr_3191at 3821.140 kb on - strand, within Psyr_3191at 3821.294 kb on + strandat 3821.361 kb on + strandat 3821.401 kb on + strandat 3821.401 kb on + strandat 3821.401 kb on + strandat 3821.401 kb on + strandat 3821.401 kb on + strandat 3821.401 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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3,820,734 + +3.4
3,820,735 - +0.7
3,820,735 - -0.6
3,820,841 - Psyr_3191 0.24 -0.3
3,821,099 + Psyr_3191 0.65 +0.9
3,821,099 + Psyr_3191 0.65 +0.7
3,821,099 + Psyr_3191 0.65 -0.2
3,821,100 - Psyr_3191 0.65 -2.4
3,821,100 - Psyr_3191 0.65 +0.7
3,821,139 + Psyr_3191 0.72 -1.4
3,821,139 + Psyr_3191 0.72 +2.1
3,821,140 - Psyr_3191 0.72 +0.8
3,821,294 + +0.2
3,821,361 + +0.5
3,821,401 + -0.5
3,821,401 + +0.3
3,821,401 + +1.1
3,821,401 + -0.7
3,821,401 + -0.9
3,821,401 + +0.7

Or see this region's nucleotide sequence