Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3112

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
3,728,317	+				+0.7
3,728,769	+		Psyr_3111	0.58	-0.1
3,728,769	+		Psyr_3111	0.58	+1.1
3,728,770	-		Psyr_3111	0.58	-1.3
3,728,770	-		Psyr_3111	0.58	-0.2
3,728,770	-		Psyr_3111	0.58	+0.9
3,728,836	+		Psyr_3111	0.66	+0.2
3,728,837	-		Psyr_3111	0.66	+0.3
3,728,868	+		Psyr_3111	0.69	-1.4
3,728,868	+		Psyr_3111	0.69	+0.3
3,728,869	-		Psyr_3111	0.69	-1.2
3,728,869	-		Psyr_3111	0.69	-0.6
3,729,113	+				+2.1
3,729,113	+				+0.4
3,729,114	-				-2.4
3,729,114	-				+3.1
3,729,124	+				-0.5
3,729,124	+				-0.6
3,729,124	+				-0.4
3,729,125	-				+0.7
3,729,125	-				-0.1
3,729,125	-				+0.7
3,729,125	-				-0.9
3,729,147	-				-0.1
3,729,221	+				-1.5
3,729,221	+				-0.5
3,729,221	+				+1.1
3,729,221	+				-2.4
3,729,221	+				-1.0
3,729,221	+				+1.1
3,729,222	-				+0.1
3,729,222	-				+0.2
3,729,222	-				+0.9
3,729,222	-				-0.6
3,729,222	-				-0.7
3,729,230	+				-1.2
3,729,433	-		Psyr_3112	0.17	+1.0
3,729,683	-		Psyr_3112	0.39	-0.0
3,729,718	+		Psyr_3112	0.43	+0.5
3,729,718	+		Psyr_3112	0.43	+0.1
3,729,718	+		Psyr_3112	0.43	-0.4
3,729,718	+		Psyr_3112	0.43	+0.2
3,729,718	+		Psyr_3112	0.43	-0.2
3,729,718	+		Psyr_3112	0.43	-2.2
3,729,718	+		Psyr_3112	0.43	+0.6
3,729,718	+		Psyr_3112	0.43	+0.8
3,729,719	-		Psyr_3112	0.43	+2.1
3,729,719	-		Psyr_3112	0.43	+0.4
3,729,719	-		Psyr_3112	0.43	-0.7
3,729,719	-		Psyr_3112	0.43	-0.2
3,729,719	-		Psyr_3112	0.43	-0.9
3,729,719	-		Psyr_3112	0.43	-0.6
3,729,719	-		Psyr_3112	0.43	+0.1
3,729,719	-		Psyr_3112	0.43	+0.6
3,729,777	-		Psyr_3112	0.48	+0.5
3,730,004	+		Psyr_3112	0.69	-1.6
3,730,013	-		Psyr_3112	0.70	-1.6
3,730,043	+		Psyr_3112	0.73	-2.6
3,730,043	+		Psyr_3112	0.73	-0.4
3,730,044	-		Psyr_3112	0.73	+0.6
3,730,048	+		Psyr_3112	0.73	+1.7
3,730,048	+		Psyr_3112	0.73	-0.4
3,730,048	+		Psyr_3112	0.73	-3.8
3,730,048	+		Psyr_3112	0.73	-0.7
3,730,048	+		Psyr_3112	0.73	+0.9
3,730,048	+		Psyr_3112	0.73	+0.1
3,730,048	+		Psyr_3112	0.73	+0.5
3,730,048	+		Psyr_3112	0.73	-0.3
3,730,048	+		Psyr_3112	0.73	-1.6
3,730,048	+		Psyr_3112	0.73	+1.2
3,730,048	+		Psyr_3112	0.73	-1.2
3,730,048	+		Psyr_3112	0.73	-0.1
3,730,049	-		Psyr_3112	0.73	+0.3
3,730,049	-		Psyr_3112	0.73	-0.4
3,730,049	-		Psyr_3112	0.73	-0.2
3,730,049	-		Psyr_3112	0.73	+0.8
3,730,049	-		Psyr_3112	0.73	-1.0
3,730,049	-		Psyr_3112	0.73	-1.8
3,730,150	+		Psyr_3112	0.82	-3.7
3,730,151	-		Psyr_3112	0.82	-1.4
3,730,162	+		Psyr_3112	0.83	-0.5
3,730,445	+				+0.1
3,730,477	+				+0.2
3,730,477	+				-1.2
3,730,477	+				+1.5
3,730,477	+				-2.4
3,730,477	+				+3.4
3,730,478	-				+1.7
3,730,478	-				-1.1
3,730,478	-				-0.9
3,730,589	+		Psyr_3113	0.17	-0.3
3,730,589	+		Psyr_3113	0.17	-0.2
3,730,589	+		Psyr_3113	0.17	+0.1
3,730,590	-		Psyr_3113	0.17	-1.3
3,730,590	-		Psyr_3113	0.17	-0.3
3,730,612	+		Psyr_3113	0.19	-2.5
3,730,612	+		Psyr_3113	0.19	-1.7
3,730,612	+		Psyr_3113	0.19	-0.6
3,730,612	+		Psyr_3113	0.19	+1.5
3,730,613	-		Psyr_3113	0.19	+2.4
3,730,613	-		Psyr_3113	0.19	+2.3
3,730,910	+		Psyr_3113	0.43	-1.2
3,730,911	-		Psyr_3113	0.43	-1.4
3,731,267	+				+3.1
3,731,267	+		Psyr_3113	0.72	-1.8
3,731,267	+		Psyr_3113	0.72	+0.6
3,731,267	+		Psyr_3113	0.72	+2.9
3,731,267	+		Psyr_3113	0.72	+0.6
3,731,268	-		Psyr_3113	0.72	-0.2
3,731,268	-		Psyr_3113	0.72	-0.6
3,731,268	-		Psyr_3113	0.72	-2.3