Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3081

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3080 and Psyr_3081 overlap by 4 nucleotidesPsyr_3081 and Psyr_3082 are separated by 16 nucleotidesPsyr_3082 and Psyr_3083 are separated by 19 nucleotides Psyr_3080: Psyr_3080 - CDS, at 3,684,099 to 3,686,681 _3080 Psyr_3081: Psyr_3081 - Secretion protein HlyD, at 3,686,678 to 3,687,811 _3081 Psyr_3082: Psyr_3082 - MltA-interacting MipA, at 3,687,828 to 3,688,676 _3082 Psyr_3083: Psyr_3083 - RND efflux system, outer membrane lipoprotein, NodT, at 3,688,696 to 3,690,168 _3083 Position (kb) 3686 3687 3688Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3685.681 kb on + strand, within Psyr_3080at 3685.681 kb on + strand, within Psyr_3080at 3685.681 kb on + strand, within Psyr_3080at 3685.681 kb on + strand, within Psyr_3080at 3685.681 kb on + strand, within Psyr_3080at 3685.682 kb on - strand, within Psyr_3080at 3685.682 kb on - strand, within Psyr_3080at 3685.682 kb on - strand, within Psyr_3080at 3685.682 kb on - strand, within Psyr_3080at 3685.682 kb on - strand, within Psyr_3080at 3685.682 kb on - strand, within Psyr_3080at 3685.682 kb on - strand, within Psyr_3080at 3685.734 kb on + strand, within Psyr_3080at 3685.735 kb on - strand, within Psyr_3080at 3685.739 kb on + strand, within Psyr_3080at 3685.862 kb on - strand, within Psyr_3080at 3685.862 kb on - strand, within Psyr_3080at 3686.131 kb on + strand, within Psyr_3080at 3686.131 kb on + strand, within Psyr_3080at 3686.131 kb on + strand, within Psyr_3080at 3686.131 kb on + strand, within Psyr_3080at 3686.131 kb on + strand, within Psyr_3080at 3686.132 kb on - strand, within Psyr_3080at 3686.132 kb on - strand, within Psyr_3080at 3686.132 kb on - strand, within Psyr_3080at 3686.132 kb on - strand, within Psyr_3080at 3686.132 kb on - strand, within Psyr_3080at 3686.133 kb on + strand, within Psyr_3080at 3686.133 kb on + strand, within Psyr_3080at 3686.133 kb on + strand, within Psyr_3080at 3686.134 kb on - strand, within Psyr_3080at 3686.134 kb on - strand, within Psyr_3080at 3686.134 kb on - strand, within Psyr_3080at 3686.472 kb on - strandat 3686.472 kb on - strandat 3686.672 kb on + strandat 3686.673 kb on - strandat 3686.673 kb on - strandat 3686.821 kb on + strandat 3687.423 kb on + strand, within Psyr_3081at 3687.427 kb on + strand, within Psyr_3081at 3687.427 kb on + strand, within Psyr_3081at 3687.428 kb on - strand, within Psyr_3081at 3687.428 kb on - strand, within Psyr_3081at 3687.746 kb on + strandat 3687.839 kb on - strandat 3687.911 kb on - strandat 3687.959 kb on + strand, within Psyr_3082at 3687.959 kb on + strand, within Psyr_3082at 3687.960 kb on - strand, within Psyr_3082at 3687.960 kb on - strand, within Psyr_3082at 3687.960 kb on - strand, within Psyr_3082at 3687.991 kb on + strand, within Psyr_3082at 3688.061 kb on - strand, within Psyr_3082at 3688.073 kb on - strand, within Psyr_3082at 3688.073 kb on - strand, within Psyr_3082at 3688.275 kb on - strand, within Psyr_3082at 3688.483 kb on + strand, within Psyr_3082at 3688.631 kb on + strandat 3688.632 kb on - strandat 3688.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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3,685,681 + Psyr_3080 0.61 +1.1
3,685,681 + Psyr_3080 0.61 -0.5
3,685,681 + Psyr_3080 0.61 -0.5
3,685,681 + Psyr_3080 0.61 +0.8
3,685,681 + Psyr_3080 0.61 -0.3
3,685,682 - Psyr_3080 0.61 -2.6
3,685,682 - Psyr_3080 0.61 +0.5
3,685,682 - Psyr_3080 0.61 -1.8
3,685,682 - Psyr_3080 0.61 -0.4
3,685,682 - Psyr_3080 0.61 +0.0
3,685,682 - Psyr_3080 0.61 -1.4
3,685,682 - Psyr_3080 0.61 +0.8
3,685,734 + Psyr_3080 0.63 -2.2
3,685,735 - Psyr_3080 0.63 -1.1
3,685,739 + Psyr_3080 0.63 -2.4
3,685,862 - Psyr_3080 0.68 -0.7
3,685,862 - Psyr_3080 0.68 -1.1
3,686,131 + Psyr_3080 0.79 +0.8
3,686,131 + Psyr_3080 0.79 +0.8
3,686,131 + Psyr_3080 0.79 +0.8
3,686,131 + Psyr_3080 0.79 -2.4
3,686,131 + Psyr_3080 0.79 +0.6
3,686,132 - Psyr_3080 0.79 -0.4
3,686,132 - Psyr_3080 0.79 -1.4
3,686,132 - Psyr_3080 0.79 -0.4
3,686,132 - Psyr_3080 0.79 -0.1
3,686,132 - Psyr_3080 0.79 -0.9
3,686,133 + Psyr_3080 0.79 +0.4
3,686,133 + Psyr_3080 0.79 +0.8
3,686,133 + Psyr_3080 0.79 -0.5
3,686,134 - Psyr_3080 0.79 +1.1
3,686,134 - Psyr_3080 0.79 +0.6
3,686,134 - Psyr_3080 0.79 +0.4
3,686,472 - -0.6
3,686,472 - -0.4
3,686,672 + -0.6
3,686,673 - +1.1
3,686,673 - +0.3
3,686,821 + +1.1
3,687,423 + Psyr_3081 0.66 +1.3
3,687,427 + Psyr_3081 0.66 -0.5
3,687,427 + Psyr_3081 0.66 +0.2
3,687,428 - Psyr_3081 0.66 +3.0
3,687,428 - Psyr_3081 0.66 +0.4
3,687,746 + +0.9
3,687,839 - -1.2
3,687,911 - +0.0
3,687,959 + Psyr_3082 0.15 -0.1
3,687,959 + Psyr_3082 0.15 +0.8
3,687,960 - Psyr_3082 0.16 +0.4
3,687,960 - Psyr_3082 0.16 +0.1
3,687,960 - Psyr_3082 0.16 +0.1
3,687,991 + Psyr_3082 0.19 -0.5
3,688,061 - Psyr_3082 0.27 -0.7
3,688,073 - Psyr_3082 0.29 +1.5
3,688,073 - Psyr_3082 0.29 +0.9
3,688,275 - Psyr_3082 0.53 -0.4
3,688,483 + Psyr_3082 0.77 +0.3
3,688,631 + +0.7
3,688,632 - +0.4
3,688,656 - -0.7

Or see this region's nucleotide sequence