Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3024

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
3,620,575	-				-2.4
3,620,608	-				-1.9
3,620,661	-				-1.4
3,620,682	-				-0.6
3,620,787	+				+0.7
3,620,787	+				-1.4
3,620,787	+				+0.4
3,620,788	-				-0.8
3,620,788	-				+0.6
3,620,788	-				-0.2
3,620,794	+				+1.1
3,620,843	-				-0.6
3,620,906	-				-0.8
3,620,906	-				-1.0
3,621,032	+		Psyr_3023	0.22	+0.1
3,621,064	+		Psyr_3023	0.28	-0.6
3,621,065	-		Psyr_3023	0.28	-2.1
3,621,214	+		Psyr_3023	0.55	+0.0
3,621,214	+		Psyr_3023	0.55	+2.7
3,621,214	+		Psyr_3023	0.55	+1.4
3,621,215	-		Psyr_3023	0.55	+0.9
3,621,394	+		Psyr_3023	0.88	-2.7
3,621,490	+				-0.7
3,621,490	+				-3.4
3,621,519	+				+0.7
3,621,519	+				-0.1
3,621,520	-				-0.3
3,621,520	-				-0.9
3,621,520	-				+0.6
3,621,520	-				+0.7
3,621,520	-				-0.6
3,621,520	-				-0.0
3,621,520	-				+1.4
3,621,520	-				+3.9
3,621,520	-				+1.9
3,621,545	-				+0.1
3,621,545	-				-0.5
3,621,545	-				-0.9
3,621,545	-				+1.2
3,621,545	-				+1.7
3,621,545	-				-0.2
3,621,545	-				-0.2
3,621,559	+				-0.5
3,621,559	+				+0.2
3,621,559	+				+1.6
3,621,559	+				-2.1
3,621,559	+				-0.2
3,621,559	+				-1.3
3,621,559	+				-0.9
3,621,559	+				-0.7
3,621,560	-				-1.1
3,621,560	-				-0.9
3,621,560	-				-2.4
3,621,560	-				-0.7
3,621,560	-				+1.1
3,621,722	+		Psyr_3024	0.14	-0.9
3,621,722	+		Psyr_3024	0.14	+0.3
3,621,779	+		Psyr_3024	0.19	+1.5
3,621,893	+		Psyr_3024	0.29	+1.1
3,621,893	+		Psyr_3024	0.29	+1.1
3,621,893	+		Psyr_3024	0.29	-0.3
3,621,893	+		Psyr_3024	0.29	-0.5
3,621,893	+		Psyr_3024	0.29	+1.3
3,621,906	-		Psyr_3024	0.30	-1.9
3,621,906	-		Psyr_3024	0.30	+0.4
3,621,906	-		Psyr_3024	0.30	+0.9
3,622,000	+		Psyr_3024	0.38	+1.1
3,622,172	+		Psyr_3024	0.54	-0.7
3,622,173	-		Psyr_3024	0.54	+0.5
3,622,319	+		Psyr_3024	0.66	+0.4
3,622,371	+		Psyr_3024	0.71	+0.1
3,622,371	+		Psyr_3024	0.71	+0.4
3,622,371	+		Psyr_3024	0.71	+0.4
3,622,371	+		Psyr_3024	0.71	+1.6
3,622,371	+		Psyr_3024	0.71	+1.5
3,622,371	+		Psyr_3024	0.71	-1.3
3,622,372	-		Psyr_3024	0.71	-0.6
3,622,372	-		Psyr_3024	0.71	-1.2
3,622,372	-		Psyr_3024	0.71	+0.1
3,622,372	-		Psyr_3024	0.71	-0.0
3,622,372	-		Psyr_3024	0.71	+0.7
3,622,405	+		Psyr_3024	0.74	+3.0
3,622,406	-		Psyr_3024	0.74	+1.9
3,622,551	-		Psyr_3024	0.87	-0.9
3,622,551	-		Psyr_3024	0.87	-0.7
3,622,659	+				-1.1
3,622,659	+				-0.2
3,622,659	+				-0.4
3,622,660	-				+2.1
3,622,660	-				-0.2
3,622,660	-				+0.2
3,622,660	-				+0.5
3,622,660	-				-0.3
3,622,683	+				-1.2
3,622,737	+				+0.0
3,622,737	+				+1.6
3,622,737	+				+0.4
3,622,737	+				+0.0
3,622,737	+				+1.7
3,622,738	-				+0.5
3,622,738	-				+0.5
3,622,738	-				+0.3
3,622,738	-				-0.3
3,622,775	+				-0.3
3,622,776	-				+0.7
3,622,776	-				-0.6
3,622,776	-				-0.5
3,622,776	-				-0.4
3,622,827	+				+0.3
3,623,111	+		Psyr_3025	0.30	+1.1
3,623,111	+		Psyr_3025	0.30	-0.6
3,623,165	+		Psyr_3025	0.35	+0.6
3,623,166	-		Psyr_3025	0.35	-2.7
3,623,303	+		Psyr_3025	0.46	-1.5
3,623,303	+		Psyr_3025	0.46	-0.6
3,623,304	-		Psyr_3025	0.46	+0.5
3,623,401	-		Psyr_3025	0.54	+1.1
3,623,524	+		Psyr_3025	0.64	-2.4
3,623,524	+		Psyr_3025	0.64	+0.0
3,623,524	+		Psyr_3025	0.64	+0.3
3,623,524	+		Psyr_3025	0.64	+1.0
3,623,525	-		Psyr_3025	0.64	-0.5
3,623,525	-		Psyr_3025	0.64	+0.5
3,623,525	-		Psyr_3025	0.64	+0.5
3,623,525	-		Psyr_3025	0.64	-1.4
3,623,525	-		Psyr_3025	0.64	+1.8