Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2887

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2886 and Psyr_2887 are separated by 33 nucleotidesPsyr_2887 and Psyr_2888 are separated by 69 nucleotides Psyr_2886: Psyr_2886 - xylose ABC transporter membrane protein, at 3,462,968 to 3,464,104 _2886 Psyr_2887: Psyr_2887 - Endoribonuclease L-PSP, at 3,464,138 to 3,464,572 _2887 Psyr_2888: Psyr_2888 - Amine oxidase, at 3,464,642 to 3,466,225 _2888 Position (kb) 3464 3465Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3463.232 kb on + strand, within Psyr_2886at 3463.304 kb on + strand, within Psyr_2886at 3463.304 kb on + strand, within Psyr_2886at 3463.306 kb on + strand, within Psyr_2886at 3463.306 kb on + strand, within Psyr_2886at 3463.306 kb on + strand, within Psyr_2886at 3463.306 kb on + strand, within Psyr_2886at 3463.307 kb on - strand, within Psyr_2886at 3463.430 kb on + strand, within Psyr_2886at 3463.430 kb on + strand, within Psyr_2886at 3463.431 kb on - strand, within Psyr_2886at 3463.431 kb on - strand, within Psyr_2886at 3463.431 kb on - strand, within Psyr_2886at 3463.431 kb on - strand, within Psyr_2886at 3463.616 kb on + strand, within Psyr_2886at 3463.616 kb on + strand, within Psyr_2886at 3463.616 kb on + strand, within Psyr_2886at 3463.617 kb on - strand, within Psyr_2886at 3463.617 kb on - strand, within Psyr_2886at 3463.617 kb on - strand, within Psyr_2886at 3463.631 kb on + strand, within Psyr_2886at 3463.632 kb on - strand, within Psyr_2886at 3463.688 kb on + strand, within Psyr_2886at 3463.688 kb on + strand, within Psyr_2886at 3463.689 kb on - strand, within Psyr_2886at 3463.689 kb on - strand, within Psyr_2886at 3463.707 kb on + strand, within Psyr_2886at 3463.773 kb on + strand, within Psyr_2886at 3463.773 kb on + strand, within Psyr_2886at 3463.774 kb on - strand, within Psyr_2886at 3463.788 kb on + strand, within Psyr_2886at 3463.840 kb on + strand, within Psyr_2886at 3463.981 kb on + strand, within Psyr_2886at 3464.083 kb on + strandat 3464.336 kb on + strand, within Psyr_2887at 3464.336 kb on + strand, within Psyr_2887at 3464.489 kb on + strand, within Psyr_2887at 3464.603 kb on + strandat 3464.604 kb on - strandat 3464.604 kb on - strandat 3464.611 kb on - strandat 3464.611 kb on - strandat 3464.614 kb on + strandat 3464.614 kb on + strandat 3464.781 kb on + strandat 3464.792 kb on - strandat 3464.862 kb on + strand, within Psyr_2888at 3464.955 kb on + strand, within Psyr_2888at 3464.955 kb on + strand, within Psyr_2888at 3464.956 kb on - strand, within Psyr_2888at 3465.009 kb on + strand, within Psyr_2888at 3465.010 kb on - strand, within Psyr_2888at 3465.010 kb on - strand, within Psyr_2888at 3465.103 kb on - strand, within Psyr_2888at 3465.256 kb on - strand, within Psyr_2888at 3465.288 kb on + strand, within Psyr_2888at 3465.288 kb on + strand, within Psyr_2888at 3465.289 kb on - strand, within Psyr_2888at 3465.289 kb on - strand, within Psyr_2888at 3465.300 kb on + strand, within Psyr_2888at 3465.300 kb on + strand, within Psyr_2888at 3465.300 kb on + strand, within Psyr_2888at 3465.301 kb on - strand, within Psyr_2888at 3465.304 kb on + strand, within Psyr_2888at 3465.305 kb on - strand, within Psyr_2888at 3465.305 kb on - strand, within Psyr_2888at 3465.305 kb on - strand, within Psyr_2888at 3465.382 kb on - strand, within Psyr_2888

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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3,463,232 + Psyr_2886 0.23 -0.6
3,463,304 + Psyr_2886 0.30 -0.8
3,463,304 + Psyr_2886 0.30 -0.9
3,463,306 + Psyr_2886 0.30 +0.5
3,463,306 + Psyr_2886 0.30 -1.4
3,463,306 + Psyr_2886 0.30 -0.3
3,463,306 + Psyr_2886 0.30 -0.4
3,463,307 - Psyr_2886 0.30 +3.0
3,463,430 + Psyr_2886 0.41 -0.8
3,463,430 + Psyr_2886 0.41 +1.4
3,463,431 - Psyr_2886 0.41 +0.7
3,463,431 - Psyr_2886 0.41 -1.2
3,463,431 - Psyr_2886 0.41 -0.2
3,463,431 - Psyr_2886 0.41 +0.5
3,463,616 + Psyr_2886 0.57 +0.3
3,463,616 + Psyr_2886 0.57 -0.6
3,463,616 + Psyr_2886 0.57 +0.6
3,463,617 - Psyr_2886 0.57 -1.6
3,463,617 - Psyr_2886 0.57 +2.2
3,463,617 - Psyr_2886 0.57 +2.2
3,463,631 + Psyr_2886 0.58 +1.4
3,463,632 - Psyr_2886 0.58 -0.6
3,463,688 + Psyr_2886 0.63 +2.2
3,463,688 + Psyr_2886 0.63 -0.3
3,463,689 - Psyr_2886 0.63 +0.7
3,463,689 - Psyr_2886 0.63 -0.4
3,463,707 + Psyr_2886 0.65 -2.3
3,463,773 + Psyr_2886 0.71 +1.2
3,463,773 + Psyr_2886 0.71 +0.5
3,463,774 - Psyr_2886 0.71 +2.2
3,463,788 + Psyr_2886 0.72 +1.2
3,463,840 + Psyr_2886 0.77 +1.6
3,463,981 + Psyr_2886 0.89 +0.2
3,464,083 + -0.2
3,464,336 + Psyr_2887 0.46 -1.0
3,464,336 + Psyr_2887 0.46 +1.2
3,464,489 + Psyr_2887 0.81 -2.3
3,464,603 + +0.7
3,464,604 - -0.0
3,464,604 - +0.3
3,464,611 - -0.0
3,464,611 - +1.4
3,464,614 + -0.8
3,464,614 + +0.4
3,464,781 + +0.8
3,464,792 - -2.6
3,464,862 + Psyr_2888 0.14 +0.0
3,464,955 + Psyr_2888 0.20 +0.3
3,464,955 + Psyr_2888 0.20 +2.4
3,464,956 - Psyr_2888 0.20 -2.2
3,465,009 + Psyr_2888 0.23 -3.1
3,465,010 - Psyr_2888 0.23 -2.4
3,465,010 - Psyr_2888 0.23 +1.2
3,465,103 - Psyr_2888 0.29 +0.9
3,465,256 - Psyr_2888 0.39 -0.6
3,465,288 + Psyr_2888 0.41 +0.4
3,465,288 + Psyr_2888 0.41 +3.2
3,465,289 - Psyr_2888 0.41 -0.6
3,465,289 - Psyr_2888 0.41 -2.3
3,465,300 + Psyr_2888 0.42 +0.4
3,465,300 + Psyr_2888 0.42 -1.4
3,465,300 + Psyr_2888 0.42 +0.8
3,465,301 - Psyr_2888 0.42 +1.2
3,465,304 + Psyr_2888 0.42 +0.2
3,465,305 - Psyr_2888 0.42 -2.3
3,465,305 - Psyr_2888 0.42 -0.2
3,465,305 - Psyr_2888 0.42 +0.5
3,465,382 - Psyr_2888 0.47 +0.2

Or see this region's nucleotide sequence