Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2787

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
3,370,676	+		Psyr_2785	0.54	-3.6
3,370,677	-		Psyr_2785	0.54	+3.1
3,370,677	-		Psyr_2785	0.54	+1.2
3,370,876	+		Psyr_2785	0.84	+0.6
3,370,877	-		Psyr_2785	0.85	+0.1
3,370,877	-		Psyr_2785	0.85	-1.4
3,370,997	-				+0.2
3,371,199	+		Psyr_2786	0.61	+0.6
3,371,199	+		Psyr_2786	0.61	+1.4
3,371,200	-		Psyr_2786	0.61	+0.2
3,371,200	-		Psyr_2786	0.61	+0.5
3,371,200	-		Psyr_2786	0.61	-0.5
3,371,276	+		Psyr_2786	0.82	-1.1
3,371,277	-		Psyr_2786	0.82	-0.0
3,371,301	+		Psyr_2786	0.89	+0.6
3,371,301	+		Psyr_2786	0.89	+0.6
3,371,301	+		Psyr_2786	0.89	-1.5
3,371,302	-		Psyr_2786	0.89	-2.4
3,371,332	+				+0.5
3,371,346	+				-1.2
3,371,346	+				+0.7
3,371,346	+				+3.4
3,371,346	+				-1.8
3,371,347	-				+0.2
3,371,347	-				+0.3
3,371,347	-				-2.1
3,371,397	+				-2.8
3,371,397	+				-1.1
3,371,398	-				-1.2
3,371,413	+				+0.7
3,371,413	+				-0.2
3,371,414	-				-0.2
3,371,425	+				-1.0
3,371,425	+				+0.2
3,371,425	+				+2.4
3,371,448	+				+0.7
3,371,448	+				-0.2
3,371,448	+				+0.0
3,371,448	+				+0.5
3,371,451	+				-1.7
3,371,452	-				-0.1
3,371,531	+				+0.8
3,371,531	+				+0.9
3,371,531	+				+0.8
3,371,531	+				+0.8
3,371,532	-				-1.0
3,371,532	-				-1.7
3,371,532	-				-0.1
3,371,637	+				-0.9
3,371,638	-				+0.5
3,371,640	-				+0.0
3,371,644	+				-1.0
3,371,644	+				-0.3
3,371,644	+				-1.1
3,371,644	+				+0.2
3,371,644	+				-0.1
3,371,644	+				-1.3
3,371,644	+				-1.7
3,371,644	+				+0.4
3,371,644	+				-1.3
3,371,644	+				-2.5
3,371,644	+				+0.8
3,371,645	-				-0.0
3,371,645	-				-0.4
3,371,645	-				-1.2
3,371,645	-				-0.2
3,371,645	-				-2.4
3,371,645	-				+1.0
3,371,645	-				-0.2
3,371,645	-				-0.9
3,371,645	-				+0.4
3,371,645	-				+1.2
3,371,645	-				-1.4
3,371,645	-				+0.4
3,371,645	-				+0.7
3,371,645	-				-0.5
3,371,675	+				+0.0
3,371,675	+				-0.2
3,371,675	+				-1.5
3,371,676	-				+3.5
3,371,676	-				-0.3
3,371,676	-				+0.0
3,371,712	-				+0.4
3,371,789	+		Psyr_2787	0.23	+0.6
3,371,850	+		Psyr_2787	0.35	+2.5
3,371,901	-		Psyr_2787	0.45	+0.4
3,372,102	-		Psyr_2787	0.85	+1.9
3,372,128	+				-2.0
3,372,128	+				+0.0
3,372,129	-				+0.9
3,372,179	+				-0.9
3,372,179	+				-3.1
3,372,179	+				+0.2
3,372,180	-				+1.4
3,372,180	-				+0.1
3,372,180	-				-1.8
3,372,180	-				-1.7
3,372,180	-				-1.1
3,372,253	+		Psyr_2788	0.17	-1.2
3,372,253	+		Psyr_2788	0.17	-1.0
3,372,308	+		Psyr_2788	0.29	+1.2
3,372,308	+		Psyr_2788	0.29	-1.4
3,372,308	+		Psyr_2788	0.29	-1.8
3,372,309	-		Psyr_2788	0.29	+0.5
3,372,467	+		Psyr_2788	0.64	+1.6
3,372,467	+		Psyr_2788	0.64	+0.9
3,372,467	+		Psyr_2788	0.64	+1.0
3,372,467	+		Psyr_2788	0.64	-1.4
3,372,468	-		Psyr_2788	0.64	-1.4
3,372,468	-				-1.8
3,372,593	+				+0.2
3,372,861	-		Psyr_2789	0.22	-0.7
3,372,989	+		Psyr_2789	0.35	+0.9
3,372,990	-		Psyr_2789	0.36	+0.6
3,372,990	-		Psyr_2789	0.36	+0.8
3,373,014	-		Psyr_2789	0.38	+1.1
3,373,053	-		Psyr_2789	0.42	-0.3
3,373,053	-		Psyr_2789	0.42	+1.4